Wall clock time and date at job start Wed Apr 15 2020 11:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00196 * 2 1 4 4 N 1.46901 * 109.47025 * 124.14607 * 3 2 1 5 5 C 1.46896 * 111.00313 * 300.25604 * 4 3 2 6 6 C 1.50698 * 109.46988 * 288.16762 * 5 4 3 7 7 H 1.07996 * 120.00425 * 354.73518 * 6 5 4 8 8 C 1.37877 * 119.99798 * 174.73906 * 6 5 4 9 9 N 1.31510 * 120.00266 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00210 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47250 * 59.99580 * 10 8 6 12 12 H 1.48493 * 109.47658 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46977 * 300.00249 * 10 8 6 14 14 C 1.46901 * 111.00171 * 64.21434 * 4 3 2 15 15 C 1.50701 * 109.47021 * 66.04368 * 14 4 3 16 16 O 1.33625 * 125.80720 * 270.26267 * 15 14 4 17 17 C 1.34218 * 110.92393 * 180.15810 * 16 15 14 18 18 C 1.34163 * 109.14478 * 359.61921 * 17 16 15 19 19 C 1.36498 * 125.80728 * 90.00381 * 15 14 4 20 20 C 1.47228 * 127.20209 * 359.97438 * 19 15 14 21 21 O 1.21538 * 119.99986 * 359.97438 * 20 19 15 22 22 O 1.34771 * 119.99938 * 180.02562 * 20 19 15 23 23 C 1.45207 * 116.99781 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00253 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00117 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00117 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47161 * 4.14706 * 3 2 1 28 28 H 1.09004 * 109.47581 * 244.14649 * 3 2 1 29 29 H 1.08997 * 109.46788 * 48.16160 * 5 4 3 30 30 H 1.08994 * 109.47503 * 168.16010 * 5 4 3 31 31 H 0.97006 * 120.00491 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.46743 * 306.04794 * 14 4 3 33 33 H 1.08992 * 109.47313 * 186.04675 * 14 4 3 34 34 H 1.08006 * 125.42994 * 179.87402 * 17 16 15 35 35 H 1.07998 * 127.02649 * 180.24710 * 18 17 16 36 36 H 1.09001 * 109.46949 * 179.97438 * 23 22 20 37 37 H 1.08994 * 109.47507 * 300.00375 * 23 22 20 38 38 H 1.08999 * 109.46714 * 60.00551 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9816 1.3403 1.1462 5 6 2.2478 1.2144 2.4126 6 6 1.4887 2.4880 2.6821 7 1 1.6119 3.3387 2.0284 8 6 0.6369 2.5671 3.7633 9 7 0.4864 1.5310 4.5592 10 14 -0.3036 4.1460 4.0979 11 1 -1.1706 4.4619 2.9343 12 1 -1.1442 3.9743 5.3099 13 1 0.6568 5.2576 4.3157 14 6 4.0111 0.2991 1.0285 15 6 4.8987 0.6014 -0.1513 16 8 4.7002 0.1860 -1.4057 17 6 5.6756 0.6254 -2.2162 18 6 6.5447 1.3569 -1.5023 19 6 6.0395 1.3503 -0.1212 20 6 6.6386 2.0131 1.0490 21 8 6.1063 1.9219 2.1378 22 8 7.7767 2.7220 0.9126 23 6 8.3102 3.3489 2.1087 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3575 2.1322 0.0743 28 1 2.6333 1.3957 -0.9248 29 1 1.5479 0.3815 2.3456 30 1 2.9522 1.0325 3.2242 31 1 -0.1132 1.5866 5.3197 32 1 3.5330 -0.6698 0.8846 33 1 4.6110 0.2767 1.9382 34 1 5.7472 0.4257 -3.2752 35 1 7.4334 1.8501 -1.8673 36 1 9.2255 3.8860 1.8601 37 1 7.5765 4.0474 2.5110 38 1 8.5293 2.5835 2.8531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292151039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:00 Heat of formation + Delta-G solvation = -36.103509 kcal Electronic energy + Delta-G solvation = -22093.042456 eV Core-core repulsion = 18710.713976 eV Total energy + Delta-G solvation = -3382.328480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.50303 -39.80507 -37.41284 -36.09670 -32.99454 -32.76075 -32.33676 -30.25910 -27.99499 -27.08200 -26.09890 -24.11606 -23.08101 -21.35083 -20.96538 -19.73959 -18.90529 -17.75113 -16.63126 -16.44024 -16.19650 -15.82329 -15.51330 -15.15286 -14.55216 -14.30488 -14.21955 -13.70374 -13.17952 -13.01890 -12.95661 -12.68762 -12.16283 -12.08626 -11.87527 -11.37008 -11.18576 -10.94572 -10.71937 -10.66140 -10.57856 -10.42771 -10.17590 -9.93610 -9.74556 -9.27239 -8.73179 -8.54220 -8.35229 -7.29234 -5.96114 -3.96352 1.40124 2.07409 2.73248 2.90399 3.11357 3.33861 3.37021 3.40845 3.44394 4.46995 4.59804 4.92810 5.01930 5.11082 5.21548 5.31120 5.39460 5.40310 5.53557 5.59070 5.63509 5.76563 5.89139 5.96846 6.05903 6.20829 6.34287 6.43278 6.60099 6.65839 7.12433 7.17169 7.26990 7.33218 7.44137 7.83642 8.08485 8.10187 8.18198 8.54716 9.09745 9.66393 11.14557 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.006013 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.180442 B = 4655.420871 C = 6017.794246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.181 4.181 3 C 0.086 3.914 4 N -0.516 5.516 5 C 0.194 3.806 6 C -0.500 4.500 7 H 0.061 0.939 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.115 3.885 15 C 0.119 3.881 16 O -0.171 6.171 17 C -0.050 4.050 18 C -0.172 4.172 19 C -0.226 4.226 20 C 0.534 3.466 21 O -0.483 6.483 22 O -0.361 6.361 23 C 0.038 3.962 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.009 0.991 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.206 0.794 35 H 0.159 0.841 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.107 -2.069 -12.107 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.201 4.201 3 C -0.042 4.042 4 N -0.240 5.240 5 C 0.070 3.930 6 C -0.539 4.539 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.013 4.013 15 C 0.065 3.935 16 O -0.066 6.066 17 C -0.116 4.116 18 C -0.191 4.191 19 C -0.229 4.229 20 C 0.378 3.622 21 O -0.370 6.370 22 O -0.278 6.278 23 C -0.056 4.056 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.027 0.973 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.135 0.865 34 H 0.223 0.777 35 H 0.176 0.824 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.880 -1.835 -11.653 16.742 hybrid contribution -0.672 0.218 0.371 0.798 sum 11.208 -1.617 -11.282 15.985 Atomic orbital electron populations 1.23697 0.95969 1.01185 1.00478 1.23483 0.96735 0.99585 1.00266 1.21335 0.94818 0.94779 0.93309 1.62472 1.13522 1.43113 1.04861 1.19789 0.92132 0.97411 0.83652 1.21032 1.23565 0.98444 1.10811 0.92096 1.24936 0.96955 0.96423 0.96122 1.69944 1.37990 1.29669 1.16214 0.86599 0.79749 0.83798 0.77469 1.20356 1.21413 1.20255 1.20975 0.93787 0.95133 0.91400 1.23138 0.93910 0.92520 0.83923 1.83850 1.44456 1.60816 1.17499 1.23825 0.89295 1.01973 0.96502 1.22833 1.01979 1.02885 0.91432 1.20061 1.00197 1.09386 0.93269 1.19920 0.78313 0.76346 0.87612 1.90946 1.60552 1.58164 1.27352 1.86518 1.39752 1.62565 1.38976 1.23216 0.98879 0.97565 0.85908 0.89605 0.88436 0.88593 0.89433 0.92220 0.97305 0.95323 0.92975 0.93302 0.86490 0.77748 0.82385 0.88474 0.91634 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 14.32 29.02 0.42 -2.72 16 2 C -0.18 -3.34 7.42 -36.03 -0.27 -3.61 16 3 C 0.09 1.70 5.49 -4.98 -0.03 1.67 16 4 N -0.52 -11.43 4.65 -238.97 -1.11 -12.54 16 5 C 0.19 5.11 4.59 -4.98 -0.02 5.09 16 6 C -0.50 -14.24 8.53 -34.44 -0.29 -14.54 16 7 H 0.06 1.74 7.66 -52.49 -0.40 1.34 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 10 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.11 2.19 4.81 -4.97 -0.02 2.17 16 15 C 0.12 2.01 5.96 -34.94 -0.21 1.80 16 16 O -0.17 -2.50 9.78 7.71 0.08 -2.42 16 17 C -0.05 -0.57 12.03 29.30 0.35 -0.22 16 18 C -0.17 -2.16 11.05 -37.44 -0.41 -2.57 16 19 C -0.23 -3.71 6.32 -103.30 -0.65 -4.36 16 20 C 0.53 9.41 7.95 34.38 0.27 9.68 16 21 O -0.48 -10.02 14.64 -19.30 -0.28 -10.30 16 22 O -0.36 -5.35 10.48 -40.69 -0.43 -5.78 16 23 C 0.04 0.44 10.57 101.05 1.07 1.51 16 24 H 0.09 1.36 8.06 -52.49 -0.42 0.94 16 25 H 0.10 1.78 7.84 -52.48 -0.41 1.37 16 26 H 0.10 1.66 6.80 -52.48 -0.36 1.31 16 27 H 0.09 1.87 7.04 -51.93 -0.37 1.51 16 28 H 0.06 1.09 6.58 -51.93 -0.34 0.75 16 29 H 0.01 0.25 6.71 -51.93 -0.35 -0.10 16 30 H 0.03 0.82 7.81 -51.93 -0.41 0.41 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.05 0.87 6.34 -51.93 -0.33 0.54 16 33 H 0.12 2.38 6.21 -51.93 -0.32 2.05 16 34 H 0.21 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -32.86 328.05 -5.94 -38.80 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.95 Total: 1.01 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 0.10 Total: -4.56 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.37 Total: -38.74 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.63 Total: -18.50 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.86 -5.94 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292151039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.696 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds