Wall clock time and date at job start Wed Apr 15 2020 11:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50695 * 120.00196 * 2 1 4 4 N 1.46901 * 109.47025 * 124.14607 * 3 2 1 5 5 C 1.46896 * 111.00313 * 300.25604 * 4 3 2 6 6 C 1.50698 * 109.46988 * 288.16762 * 5 4 3 7 7 H 1.07996 * 120.00425 * 354.73518 * 6 5 4 8 8 C 1.37877 * 119.99798 * 174.73906 * 6 5 4 9 9 N 1.31510 * 120.00266 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00210 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47250 * 59.99580 * 10 8 6 12 12 H 1.48493 * 109.47658 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46977 * 300.00249 * 10 8 6 14 14 C 1.46901 * 111.00171 * 64.21434 * 4 3 2 15 15 C 1.50701 * 109.47021 * 66.04368 * 14 4 3 16 16 O 1.33625 * 125.80720 * 270.26267 * 15 14 4 17 17 C 1.34218 * 110.92393 * 180.15810 * 16 15 14 18 18 C 1.34163 * 109.14478 * 359.61921 * 17 16 15 19 19 C 1.36498 * 125.80728 * 90.00381 * 15 14 4 20 20 C 1.47228 * 127.20209 * 359.97438 * 19 15 14 21 21 O 1.21538 * 119.99986 * 359.97438 * 20 19 15 22 22 O 1.34771 * 119.99938 * 180.02562 * 20 19 15 23 23 C 1.45207 * 116.99781 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00253 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.00117 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00117 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47161 * 4.14706 * 3 2 1 28 28 H 1.09004 * 109.47581 * 244.14649 * 3 2 1 29 29 H 1.08997 * 109.46788 * 48.16160 * 5 4 3 30 30 H 1.08994 * 109.47503 * 168.16010 * 5 4 3 31 31 H 0.97006 * 120.00491 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.46743 * 306.04794 * 14 4 3 33 33 H 1.08992 * 109.47313 * 186.04675 * 14 4 3 34 34 H 1.08006 * 125.42994 * 179.87402 * 17 16 15 35 35 H 1.07998 * 127.02649 * 180.24710 * 18 17 16 36 36 H 1.09001 * 109.46949 * 179.97438 * 23 22 20 37 37 H 1.08994 * 109.47507 * 300.00375 * 23 22 20 38 38 H 1.08999 * 109.46714 * 60.00551 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9816 1.3403 1.1462 5 6 2.2478 1.2144 2.4126 6 6 1.4887 2.4880 2.6821 7 1 1.6119 3.3387 2.0284 8 6 0.6369 2.5671 3.7633 9 7 0.4864 1.5310 4.5592 10 14 -0.3036 4.1460 4.0979 11 1 -1.1706 4.4619 2.9343 12 1 -1.1442 3.9743 5.3099 13 1 0.6568 5.2576 4.3157 14 6 4.0111 0.2991 1.0285 15 6 4.8987 0.6014 -0.1513 16 8 4.7002 0.1860 -1.4057 17 6 5.6756 0.6254 -2.2162 18 6 6.5447 1.3569 -1.5023 19 6 6.0395 1.3503 -0.1212 20 6 6.6386 2.0131 1.0490 21 8 6.1063 1.9219 2.1378 22 8 7.7767 2.7220 0.9126 23 6 8.3102 3.3489 2.1087 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3575 2.1322 0.0743 28 1 2.6333 1.3957 -0.9248 29 1 1.5479 0.3815 2.3456 30 1 2.9522 1.0325 3.2242 31 1 -0.1132 1.5866 5.3197 32 1 3.5330 -0.6698 0.8846 33 1 4.6110 0.2767 1.9382 34 1 5.7472 0.4257 -3.2752 35 1 7.4334 1.8501 -1.8673 36 1 9.2255 3.8860 1.8601 37 1 7.5765 4.0474 2.5110 38 1 8.5293 2.5835 2.8531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292151039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:59 Heat of formation + Delta-G solvation = -57.829017 kcal Electronic energy + Delta-G solvation = -22093.984545 eV Core-core repulsion = 18710.713976 eV Total energy + Delta-G solvation = -3383.270569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.62510 -41.10489 -39.08776 -37.41946 -34.85878 -34.25930 -33.74574 -31.69332 -29.31951 -28.75829 -27.52175 -25.82867 -24.48472 -22.78559 -22.42401 -21.04388 -20.33722 -18.94863 -18.37120 -17.83533 -17.70004 -17.10067 -16.87863 -16.71194 -16.29174 -15.88845 -15.56505 -15.29477 -14.54413 -14.26562 -14.22019 -14.03874 -13.77875 -13.71572 -13.11665 -12.98284 -12.78976 -12.66976 -12.59590 -12.33887 -12.18659 -12.03469 -11.77357 -11.57804 -11.37451 -10.85941 -10.59145 -10.21708 -9.67939 -9.05007 -8.17035 -6.26014 0.09100 1.10033 1.39065 1.42430 1.44105 1.50127 1.57019 1.99610 2.05963 2.41265 3.15224 3.37991 3.53757 3.74620 3.94316 4.04449 4.12898 4.33144 4.34923 4.35377 4.41848 4.54540 4.62363 4.66370 4.79996 4.90798 4.95748 5.05803 5.19611 5.29080 5.34715 5.42737 5.63778 5.71127 5.88343 6.01373 6.07929 6.31581 6.52127 6.78433 6.87196 7.41819 8.93237 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.015122 B = 0.006013 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.180442 B = 4655.420871 C = 6017.794246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C 0.092 3.908 4 N -0.528 5.528 5 C 0.214 3.786 6 C -0.516 4.516 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.963 3.037 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.122 3.878 15 C 0.095 3.905 16 O -0.174 6.174 17 C -0.025 4.025 18 C -0.178 4.178 19 C -0.240 4.240 20 C 0.530 3.470 21 O -0.528 6.528 22 O -0.355 6.355 23 C 0.031 3.969 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.079 0.921 29 H -0.008 1.008 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.259 0.741 35 H 0.187 0.813 36 H 0.141 0.859 37 H 0.052 0.948 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.781 -1.539 -14.577 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.210 4.210 3 C -0.036 4.036 4 N -0.252 5.252 5 C 0.089 3.911 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.788 3.212 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.200 1.200 14 C -0.006 4.006 15 C 0.041 3.959 16 O -0.069 6.069 17 C -0.090 4.090 18 C -0.197 4.197 19 C -0.243 4.243 20 C 0.376 3.624 21 O -0.418 6.418 22 O -0.272 6.272 23 C -0.062 4.062 24 H 0.127 0.873 25 H 0.108 0.892 26 H 0.127 0.873 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.009 0.991 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.275 0.725 35 H 0.204 0.796 36 H 0.159 0.841 37 H 0.071 0.929 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.580 -1.302 -14.159 18.985 hybrid contribution -0.752 0.051 1.065 1.305 sum 11.828 -1.251 -13.094 17.690 Atomic orbital electron populations 1.23868 0.95913 1.01939 0.99381 1.23470 0.97022 0.99310 1.01208 1.21249 0.94416 0.94933 0.92998 1.62283 1.14023 1.45019 1.03838 1.19335 0.90884 0.96008 0.84869 1.21297 1.24103 0.99006 1.11048 0.92692 1.25797 0.97817 0.99837 0.95717 1.70068 1.38668 1.31753 1.16675 0.85537 0.78437 0.79438 0.77804 1.19032 1.20640 1.19950 1.20687 0.92987 0.94694 0.92239 1.22505 0.94301 0.94649 0.84460 1.83838 1.45599 1.60811 1.16687 1.24889 0.87012 0.99233 0.97827 1.23136 1.03449 1.03873 0.89212 1.20357 1.00315 1.08832 0.94808 1.20319 0.78570 0.75997 0.87466 1.90930 1.61910 1.59874 1.29116 1.86511 1.38462 1.61930 1.40249 1.23542 0.99996 0.97422 0.85242 0.87323 0.89242 0.87334 0.91507 0.90299 0.99056 0.98942 0.92765 0.92374 0.88755 0.72487 0.79616 0.84116 0.92905 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.08 14.32 67.78 0.97 -5.11 16 2 C -0.19 -6.99 7.42 25.65 0.19 -6.80 16 3 C 0.09 3.67 5.49 85.56 0.47 4.14 16 4 N -0.53 -24.26 4.65 -909.98 -4.23 -28.49 16 5 C 0.21 11.85 4.59 85.56 0.39 12.24 16 6 C -0.52 -30.35 8.53 25.60 0.22 -30.13 16 7 H 0.05 3.22 7.66 -2.91 -0.02 3.20 16 8 C 0.01 0.37 5.46 84.66 0.46 0.84 16 9 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 10 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 14 C 0.12 4.82 4.81 85.56 0.41 5.23 16 15 C 0.09 3.17 5.96 25.28 0.15 3.32 16 16 O -0.17 -4.68 9.78 4.68 0.05 -4.63 16 17 C -0.02 -0.46 12.03 66.89 0.80 0.35 16 18 C -0.18 -3.90 11.05 23.66 0.26 -3.64 16 19 C -0.24 -7.71 6.32 -19.01 -0.12 -7.83 16 20 C 0.53 18.99 7.95 70.18 0.56 19.55 16 21 O -0.53 -23.08 14.64 19.71 0.29 -22.79 16 22 O -0.35 -10.26 10.48 -56.82 -0.60 -10.86 16 23 C 0.03 0.70 10.57 113.37 1.20 1.90 16 24 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 25 H 0.09 3.27 7.84 -2.91 -0.02 3.25 16 26 H 0.11 3.69 6.80 -2.91 -0.02 3.67 16 27 H 0.07 2.92 7.04 -2.39 -0.02 2.90 16 28 H 0.08 2.82 6.58 -2.39 -0.02 2.80 16 29 H -0.01 -0.48 6.71 -2.39 -0.02 -0.49 16 30 H -0.01 -0.46 7.81 -2.39 -0.02 -0.48 16 31 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 32 H 0.06 2.14 6.34 -2.39 -0.02 2.12 16 33 H 0.09 4.14 6.21 -2.39 -0.01 4.12 16 34 H 0.26 1.76 8.06 -2.91 -0.02 1.73 16 35 H 0.19 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -74.30 328.05 4.85 -69.45 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.06 Total: 12.41 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.97 Total: -5.95 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -3.94 Total: -85.34 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.26 Total: -38.28 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.30 4.85 -69.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292151039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.624 kcal (2) G-P(sol) polarization free energy of solvation -74.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds