Wall clock time and date at job start Wed Apr 15 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99734 * 2 1 4 4 N 1.46904 * 109.47165 * 125.00273 * 3 2 1 5 5 C 1.46900 * 110.99878 * 288.42334 * 4 3 2 6 6 C 1.50699 * 109.46940 * 160.75332 * 5 4 3 7 7 H 1.07999 * 119.99791 * 4.54876 * 6 5 4 8 8 C 1.37875 * 119.99651 * 184.54497 * 6 5 4 9 9 N 1.31520 * 119.99772 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00328 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 89.99749 * 10 8 6 12 12 H 1.48500 * 109.47164 * 209.99998 * 10 8 6 13 13 H 1.48496 * 109.47245 * 329.99893 * 10 8 6 14 14 C 1.46894 * 111.00001 * 164.47083 * 4 3 2 15 15 C 1.50702 * 109.47186 * 293.95175 * 14 4 3 16 16 C 1.34159 * 125.42725 * 89.99994 * 15 14 4 17 17 C 1.47054 * 105.94965 * 180.02562 * 16 15 14 18 18 C 1.47235 * 127.20119 * 179.97438 * 17 16 15 19 19 O 1.21537 * 120.00015 * 0.02562 * 18 17 16 20 20 O 1.34775 * 120.00109 * 179.97438 * 18 17 16 21 21 C 1.45199 * 116.99913 * 180.02562 * 20 18 17 22 22 C 1.36493 * 105.59817 * 359.97438 * 17 16 15 23 23 O 1.33620 * 108.38410 * 0.02562 * 22 17 16 24 24 H 1.07997 * 120.00166 * 359.97438 * 1 2 3 25 25 H 1.08009 * 119.99880 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00166 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47064 * 4.99796 * 3 2 1 28 28 H 1.08998 * 109.47126 * 245.00046 * 3 2 1 29 29 H 1.08997 * 109.47239 * 280.75585 * 5 4 3 30 30 H 1.09007 * 109.47059 * 40.75759 * 5 4 3 31 31 H 0.96999 * 119.99997 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47289 * 173.95441 * 14 4 3 33 33 H 1.08998 * 109.47247 * 53.94765 * 14 4 3 34 34 H 1.08003 * 127.02902 * 359.75820 * 16 15 14 35 35 H 1.08991 * 109.47198 * 299.99658 * 21 20 18 36 36 H 1.08999 * 109.47175 * 60.00562 * 21 20 18 37 37 H 1.09002 * 109.47005 * 180.02562 * 21 20 18 38 38 H 1.08003 * 125.80869 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2750 1.4792 2.4057 6 6 3.1627 1.0383 3.5409 7 1 4.1864 0.7541 3.3468 8 6 2.6680 0.9980 4.8272 9 7 3.4429 0.6137 5.8180 10 14 0.8973 1.4891 5.1628 11 1 0.0230 0.2937 5.0543 12 1 0.7919 2.0570 6.5309 13 1 0.4692 2.5070 4.1700 14 6 3.9951 2.3965 0.9697 15 6 4.8760 2.0802 -0.2114 16 6 4.6448 2.4588 -1.4775 17 6 5.7626 1.9243 -2.2697 18 6 5.9740 2.0663 -3.7198 19 8 5.1718 2.6827 -4.3934 20 8 7.0576 1.5137 -4.3002 21 6 7.2018 1.6943 -5.7336 22 6 6.5631 1.2690 -1.3793 23 8 6.0169 1.3747 -0.1644 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3584 2.1316 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 1.9965 2.5235 2.5467 30 1 1.3761 0.8628 2.3870 31 1 3.0950 0.5857 6.7230 32 1 4.6054 2.4647 1.8701 33 1 3.4887 3.3469 0.8010 34 1 3.8066 3.0345 -1.8415 35 1 6.3425 1.2584 -6.2430 36 1 7.2582 2.7586 -5.9619 37 1 8.1130 1.2010 -6.0721 38 1 7.4812 0.7522 -1.6164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292258120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:05 Heat of formation + Delta-G solvation = -36.295940 kcal Electronic energy + Delta-G solvation = -21287.876614 eV Core-core repulsion = 17905.539789 eV Total energy + Delta-G solvation = -3382.336825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.53891 -40.20743 -37.45418 -36.50378 -33.36021 -32.99587 -32.46908 -30.66210 -28.13969 -27.76473 -26.21491 -23.97979 -23.56149 -21.17901 -20.73848 -20.06944 -19.32371 -17.56999 -17.20693 -16.87138 -16.59954 -16.03239 -15.99643 -15.20342 -14.74051 -14.47399 -13.96248 -13.64199 -13.52162 -13.40913 -13.04535 -12.89680 -12.79327 -12.37726 -12.23047 -11.80512 -11.37034 -11.24173 -11.00441 -10.73681 -10.67144 -10.60629 -10.54796 -9.98222 -9.82632 -9.38432 -9.01839 -8.59577 -8.54501 -7.57677 -6.07793 -4.05544 1.14669 2.03346 2.48873 2.64962 2.95925 3.03418 3.26881 3.34492 3.35755 4.39428 4.56837 4.58140 4.78318 4.87157 4.94763 4.99013 5.24089 5.25565 5.35748 5.48496 5.51586 5.53509 5.76103 5.83163 5.92194 5.99739 6.09294 6.19142 6.25739 6.41033 6.73744 6.77654 6.97205 7.06797 7.14302 7.54124 7.65466 7.75852 7.85682 8.59674 9.01565 9.53473 11.05233 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.003963 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.056858 B = 7063.358286 C = 7773.301784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C 0.066 3.934 4 N -0.519 5.519 5 C 0.164 3.836 6 C -0.510 4.510 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.130 3.870 15 C 0.031 3.969 16 C -0.172 4.172 17 C -0.237 4.237 18 C 0.540 3.460 19 O -0.509 6.509 20 O -0.360 6.360 21 C 0.038 3.962 22 C 0.054 3.946 23 O -0.153 6.153 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.032 0.968 28 H 0.079 0.921 29 H -0.008 1.008 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.158 0.842 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.102 0.898 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 2.231 -18.300 19.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.139 4.139 3 C -0.062 4.062 4 N -0.244 5.244 5 C 0.039 3.961 6 C -0.549 4.549 7 H 0.100 0.900 8 C -0.132 4.132 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.193 1.193 14 C 0.002 3.998 15 C -0.019 4.019 16 C -0.192 4.192 17 C -0.240 4.240 18 C 0.386 3.614 19 O -0.398 6.398 20 O -0.277 6.277 21 C -0.055 4.055 22 C -0.018 4.018 23 O -0.046 6.046 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.130 0.870 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.009 0.991 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.175 0.825 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.837 1.832 -18.019 18.746 hybrid contribution -1.439 0.966 -0.167 1.741 sum 3.398 2.797 -18.186 18.711 Atomic orbital electron populations 1.23724 0.95963 1.01311 1.03672 1.22855 0.95343 0.98781 0.96932 1.21417 0.94612 0.94609 0.95556 1.61911 1.14939 1.44737 1.02764 1.20229 0.94642 0.95016 0.86253 1.21016 0.99838 1.44495 0.89511 0.90005 1.24876 0.97273 0.94862 0.96141 1.69891 1.36007 1.47783 1.00019 0.86906 0.86014 0.79368 0.77742 1.20094 1.21183 1.19314 1.20580 0.92296 0.92884 0.94004 1.22583 0.86788 0.95618 0.96862 1.22365 0.99814 1.06017 0.91030 1.20407 1.01128 1.11773 0.90649 1.20100 0.78520 0.75383 0.87384 1.90836 1.44674 1.39530 1.64782 1.86543 1.44363 1.71203 1.25576 1.23252 1.02952 1.02607 0.76715 1.24654 0.98199 0.97662 0.81263 1.83881 1.32679 1.57053 1.31033 0.89148 0.88700 0.87003 0.94990 0.90332 0.99072 0.94923 0.92625 0.87091 0.92047 0.82481 0.91845 0.91875 0.88002 0.76619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.13 14.32 29.02 0.42 -2.71 16 2 C -0.12 -2.00 8.73 -36.02 -0.31 -2.32 16 3 C 0.07 1.11 5.27 -4.97 -0.03 1.09 16 4 N -0.52 -10.35 4.37 -238.97 -1.04 -11.39 16 5 C 0.16 3.81 3.65 -4.98 -0.02 3.79 16 6 C -0.51 -14.03 9.15 -34.44 -0.32 -14.35 16 7 H 0.08 2.46 7.88 -52.49 -0.41 2.04 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 10 Si 0.87 21.10 27.38 -169.99 -4.65 16.44 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.23 6.68 56.52 0.38 -5.85 16 14 C 0.13 2.28 5.31 -4.98 -0.03 2.26 16 15 C 0.03 0.49 6.24 -35.74 -0.22 0.27 16 16 C -0.17 -2.53 9.19 -37.45 -0.34 -2.87 16 17 C -0.24 -3.27 6.31 -103.30 -0.65 -3.92 16 18 C 0.54 7.42 7.95 34.39 0.27 7.69 16 19 O -0.51 -8.22 16.77 -19.30 -0.32 -8.54 16 20 O -0.36 -3.98 10.42 -40.70 -0.42 -4.41 16 21 C 0.04 0.30 10.57 101.05 1.07 1.37 16 22 C 0.05 0.66 11.94 30.10 0.36 1.02 16 23 O -0.15 -2.37 10.52 7.73 0.08 -2.29 16 24 H 0.09 1.28 7.84 -52.49 -0.41 0.87 16 25 H 0.09 1.27 8.06 -52.48 -0.42 0.84 16 26 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.03 0.52 7.71 -51.93 -0.40 0.12 16 28 H 0.08 1.24 5.50 -51.93 -0.29 0.95 16 29 H -0.01 -0.19 7.38 -51.93 -0.38 -0.58 16 30 H 0.03 0.78 6.29 -51.93 -0.33 0.45 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.11 2.14 7.29 -51.93 -0.38 1.76 16 33 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.16 2.17 7.95 -52.48 -0.42 1.75 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.22 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -32.33 331.27 -5.63 -37.97 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -5.13 Total: 0.27 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 0.10 Total: -6.80 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.27 Total: -37.64 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.67 Total: -15.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.65 Total: 16.44 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.33 -5.63 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292258120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.670 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds