Wall clock time and date at job start Wed Apr 15 2020 11:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99734 * 2 1 4 4 N 1.46904 * 109.47165 * 125.00273 * 3 2 1 5 5 C 1.46900 * 110.99878 * 288.42334 * 4 3 2 6 6 C 1.50699 * 109.46940 * 160.75332 * 5 4 3 7 7 H 1.07999 * 119.99791 * 4.54876 * 6 5 4 8 8 C 1.37875 * 119.99651 * 184.54497 * 6 5 4 9 9 N 1.31520 * 119.99772 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 120.00328 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47280 * 89.99749 * 10 8 6 12 12 H 1.48500 * 109.47164 * 209.99998 * 10 8 6 13 13 H 1.48496 * 109.47245 * 329.99893 * 10 8 6 14 14 C 1.46894 * 111.00001 * 164.47083 * 4 3 2 15 15 C 1.50702 * 109.47186 * 293.95175 * 14 4 3 16 16 C 1.34159 * 125.42725 * 89.99994 * 15 14 4 17 17 C 1.47054 * 105.94965 * 180.02562 * 16 15 14 18 18 C 1.47235 * 127.20119 * 179.97438 * 17 16 15 19 19 O 1.21537 * 120.00015 * 0.02562 * 18 17 16 20 20 O 1.34775 * 120.00109 * 179.97438 * 18 17 16 21 21 C 1.45199 * 116.99913 * 180.02562 * 20 18 17 22 22 C 1.36493 * 105.59817 * 359.97438 * 17 16 15 23 23 O 1.33620 * 108.38410 * 0.02562 * 22 17 16 24 24 H 1.07997 * 120.00166 * 359.97438 * 1 2 3 25 25 H 1.08009 * 119.99880 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00166 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47064 * 4.99796 * 3 2 1 28 28 H 1.08998 * 109.47126 * 245.00046 * 3 2 1 29 29 H 1.08997 * 109.47239 * 280.75585 * 5 4 3 30 30 H 1.09007 * 109.47059 * 40.75759 * 5 4 3 31 31 H 0.96999 * 119.99997 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47289 * 173.95441 * 14 4 3 33 33 H 1.08998 * 109.47247 * 53.94765 * 14 4 3 34 34 H 1.08003 * 127.02902 * 359.75820 * 16 15 14 35 35 H 1.08991 * 109.47198 * 299.99658 * 21 20 18 36 36 H 1.08999 * 109.47175 * 60.00562 * 21 20 18 37 37 H 1.09002 * 109.47005 * 180.02562 * 21 20 18 38 38 H 1.08003 * 125.80869 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2750 1.4792 2.4057 6 6 3.1627 1.0383 3.5409 7 1 4.1864 0.7541 3.3468 8 6 2.6680 0.9980 4.8272 9 7 3.4429 0.6137 5.8180 10 14 0.8973 1.4891 5.1628 11 1 0.0230 0.2937 5.0543 12 1 0.7919 2.0570 6.5309 13 1 0.4692 2.5070 4.1700 14 6 3.9951 2.3965 0.9697 15 6 4.8760 2.0802 -0.2114 16 6 4.6448 2.4588 -1.4775 17 6 5.7626 1.9243 -2.2697 18 6 5.9740 2.0663 -3.7198 19 8 5.1718 2.6827 -4.3934 20 8 7.0576 1.5137 -4.3002 21 6 7.2018 1.6943 -5.7336 22 6 6.5631 1.2690 -1.3793 23 8 6.0169 1.3747 -0.1644 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3584 2.1316 0.0895 28 1 2.6212 1.4027 -0.9314 29 1 1.9965 2.5235 2.5467 30 1 1.3761 0.8628 2.3870 31 1 3.0950 0.5857 6.7230 32 1 4.6054 2.4647 1.8701 33 1 3.4887 3.3469 0.8010 34 1 3.8066 3.0345 -1.8415 35 1 6.3425 1.2584 -6.2430 36 1 7.2582 2.7586 -5.9619 37 1 8.1130 1.2010 -6.0721 38 1 7.4812 0.7522 -1.6164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292258120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:04 Heat of formation + Delta-G solvation = -57.449806 kcal Electronic energy + Delta-G solvation = -21288.793914 eV Core-core repulsion = 17905.539789 eV Total energy + Delta-G solvation = -3383.254125 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.67844 -41.18995 -38.94519 -37.48114 -34.93757 -34.42865 -33.95078 -32.05389 -29.67360 -28.78251 -27.44399 -25.25670 -24.95882 -22.59184 -22.12272 -21.15708 -20.60292 -18.98467 -18.62921 -18.19194 -17.66022 -17.17017 -17.05478 -16.62909 -16.25494 -15.98023 -15.23163 -15.21010 -14.81774 -14.38237 -14.29782 -14.14007 -14.07734 -13.94151 -13.47369 -13.01851 -12.86598 -12.69215 -12.40957 -12.26379 -11.93202 -11.85082 -11.83151 -11.79759 -11.48042 -10.95435 -10.75416 -10.25542 -9.71375 -9.11029 -8.25078 -6.27918 0.12361 0.84392 1.37795 1.37859 1.42194 1.48560 1.58389 1.89357 1.98038 2.36608 3.07648 3.28491 3.53004 3.61297 3.97234 4.09714 4.20373 4.25079 4.30481 4.34830 4.40458 4.50806 4.57157 4.65615 4.73058 4.74405 4.90206 4.95193 4.99096 5.10309 5.19670 5.26410 5.55644 5.74039 5.77899 5.99195 6.04665 6.26630 6.61385 6.66077 6.78514 7.35172 8.91606 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.003963 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.056858 B = 7063.358286 C = 7773.301784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.150 4.150 3 C 0.071 3.929 4 N -0.538 5.538 5 C 0.177 3.823 6 C -0.512 4.512 7 H 0.038 0.962 8 C 0.010 3.990 9 N -0.948 5.948 10 Si 0.942 3.058 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.248 1.248 14 C 0.134 3.866 15 C 0.009 3.991 16 C -0.162 4.162 17 C -0.258 4.258 18 C 0.545 3.455 19 O -0.540 6.540 20 O -0.356 6.356 21 C 0.030 3.970 22 C 0.081 3.919 23 O -0.175 6.175 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.088 0.912 29 H -0.004 1.004 30 H 0.034 0.966 31 H 0.266 0.734 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.165 0.835 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.138 0.862 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.785 2.473 -20.145 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.169 4.169 3 C -0.056 4.056 4 N -0.262 5.262 5 C 0.050 3.950 6 C -0.551 4.551 7 H 0.056 0.944 8 C -0.187 4.187 9 N -0.589 5.589 10 Si 0.766 3.234 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.172 1.172 14 C 0.007 3.993 15 C -0.040 4.040 16 C -0.182 4.182 17 C -0.261 4.261 18 C 0.392 3.608 19 O -0.432 6.432 20 O -0.272 6.272 21 C -0.063 4.063 22 C 0.010 3.990 23 O -0.069 6.069 24 H 0.120 0.880 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.014 0.986 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.182 0.818 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 3.923 2.074 -19.900 20.389 hybrid contribution -0.993 0.827 0.284 1.323 sum 2.930 2.900 -19.616 20.044 Atomic orbital electron populations 1.23974 0.95368 1.02709 1.00776 1.22863 0.96130 0.98284 0.99615 1.21424 0.94362 0.95266 0.94562 1.61748 1.15768 1.46206 1.02511 1.19927 0.93799 0.94741 0.86514 1.21242 0.98709 1.43776 0.91356 0.94367 1.25788 1.02178 0.94930 0.95820 1.70050 1.38462 1.49728 1.00614 0.85787 0.79994 0.79640 0.77981 1.19293 1.20916 1.17177 1.20439 0.91925 0.93248 0.93736 1.22196 0.87546 0.97634 0.96587 1.22474 1.00078 1.05019 0.90609 1.20508 1.01460 1.12874 0.91233 1.20049 0.78680 0.74846 0.87177 1.90821 1.45901 1.41094 1.65392 1.86529 1.42858 1.70383 1.27425 1.23608 1.04664 1.03261 0.74747 1.25478 0.98347 0.95571 0.79600 1.83872 1.32865 1.57426 1.32733 0.87969 0.87038 0.87932 0.93928 0.89358 0.98608 0.94831 0.92507 0.90025 0.90136 0.81787 0.91969 0.91836 0.84414 0.72417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.21 14.32 67.78 0.97 -4.24 16 2 C -0.15 -4.79 8.73 25.65 0.22 -4.57 16 3 C 0.07 2.32 5.27 85.56 0.45 2.77 16 4 N -0.54 -21.48 4.37 -909.95 -3.97 -25.46 16 5 C 0.18 8.15 3.65 85.56 0.31 8.46 16 6 C -0.51 -29.00 9.15 25.60 0.23 -28.77 16 7 H 0.04 2.43 7.88 -2.91 -0.02 2.41 16 8 C 0.01 0.58 5.47 84.65 0.46 1.04 16 9 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 10 Si 0.94 43.26 27.38 68.60 1.88 45.14 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.25 -10.50 6.68 99.48 0.66 -9.84 16 14 C 0.13 4.78 5.31 85.56 0.45 5.23 16 15 C 0.01 0.29 6.24 24.76 0.15 0.45 16 16 C -0.16 -4.62 9.19 23.65 0.22 -4.40 16 17 C -0.26 -6.75 6.31 -19.01 -0.12 -6.87 16 18 C 0.55 14.15 7.95 70.19 0.56 14.71 16 19 O -0.54 -16.94 16.77 19.71 0.33 -16.61 16 20 O -0.36 -7.05 10.42 -56.86 -0.59 -7.64 16 21 C 0.03 0.40 10.57 113.37 1.20 1.59 16 22 C 0.08 1.83 11.94 67.41 0.80 2.63 16 23 O -0.17 -5.36 10.52 4.74 0.05 -5.31 16 24 H 0.10 2.55 7.84 -2.91 -0.02 2.53 16 25 H 0.11 2.65 8.06 -2.91 -0.02 2.62 16 26 H 0.10 3.41 8.06 -2.91 -0.02 3.38 16 27 H 0.04 1.30 7.71 -2.39 -0.02 1.28 16 28 H 0.09 2.68 5.50 -2.39 -0.01 2.67 16 29 H 0.00 -0.17 7.38 -2.39 -0.02 -0.19 16 30 H 0.03 1.55 6.29 -2.38 -0.01 1.53 16 31 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 32 H 0.08 3.34 7.29 -2.39 -0.02 3.32 16 33 H 0.08 2.50 8.12 -2.39 -0.02 2.48 16 34 H 0.16 4.35 7.95 -2.91 -0.02 4.33 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.26 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -71.68 331.27 4.92 -66.76 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 1.01 Total: 13.49 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 5.92 Total: -11.95 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.67 Total: -83.87 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.21 Total: -29.56 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Total: -71.68 4.92 -66.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292258120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.307 kcal (2) G-P(sol) polarization free energy of solvation -71.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds