Wall clock time and date at job start Wed Apr 15 2020 11:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00222 * 2 1 4 4 O 1.20836 * 119.99937 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00273 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.47294 * 180.02562 * 5 3 2 7 7 C 1.36942 * 119.99605 * 264.00944 * 6 5 3 8 8 H 1.08001 * 119.99933 * 196.18320 * 7 6 5 9 9 C 1.38809 * 119.99990 * 16.18655 * 7 6 5 10 10 N 1.31616 * 120.00335 * 22.15944 * 9 7 6 11 11 Si 1.86808 * 119.99805 * 202.15353 * 9 7 6 12 12 H 1.48500 * 109.47048 * 90.00089 * 11 9 7 13 13 H 1.48500 * 109.47017 * 209.99943 * 11 9 7 14 14 H 1.48497 * 109.47046 * 330.00004 * 11 9 7 15 15 C 1.46496 * 120.00506 * 84.00890 * 6 5 3 16 16 C 1.50698 * 109.47257 * 89.99758 * 15 6 5 17 17 C 1.38238 * 119.99623 * 90.00041 * 16 15 6 18 18 C 1.38240 * 119.99782 * 180.02562 * 17 16 15 19 19 C 1.38231 * 119.99982 * 0.02562 * 18 17 16 20 20 C 1.50701 * 119.99765 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.47368 * 89.99921 * 20 19 18 22 22 C 1.38230 * 120.00230 * 0.24661 * 19 18 17 23 23 C 1.38236 * 119.99996 * 359.50195 * 22 19 18 24 24 H 1.09002 * 109.46784 * 300.00382 * 1 2 3 25 25 H 1.09001 * 109.46997 * 59.99669 * 1 2 3 26 26 H 1.08995 * 109.47244 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47175 * 60.00100 * 5 3 2 28 28 H 1.08997 * 109.47416 * 299.99932 * 5 3 2 29 29 H 0.97002 * 120.00111 * 180.02562 * 10 9 7 30 30 H 1.08996 * 109.46777 * 330.00513 * 15 6 5 31 31 H 1.08994 * 109.47431 * 210.00380 * 15 6 5 32 32 H 1.08000 * 120.00048 * 0.02562 * 17 16 15 33 33 H 1.07995 * 119.99671 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47419 * 329.99398 * 20 19 18 35 35 H 1.09004 * 109.46805 * 209.99436 * 20 19 18 36 36 H 0.96700 * 113.99952 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.00385 * 179.72608 * 22 19 18 38 38 H 1.08002 * 120.00196 * 180.22798 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.2940 3.3020 -1.1791 8 1 4.8417 4.2328 -1.1700 9 6 3.9067 2.7363 -2.3861 10 7 2.9047 1.8837 -2.4219 11 14 4.8076 3.1854 -3.9598 12 1 5.9392 2.2465 -4.1675 13 1 3.8717 3.0945 -5.1091 14 1 5.3281 4.5721 -3.8536 15 6 4.0630 3.4190 1.2623 16 6 5.4459 3.2717 1.8426 17 6 6.4339 4.1810 1.5138 18 6 7.7026 4.0456 2.0457 19 6 7.9836 3.0007 2.9059 20 6 9.3669 2.8528 3.4852 21 8 9.4471 3.5731 4.7168 22 6 6.9972 2.0882 3.2303 23 6 5.7271 2.2265 2.7025 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7806 0.8891 29 1 2.6343 1.4881 -3.2653 30 1 3.3302 3.0210 1.9642 31 1 3.8559 4.4734 1.0798 32 1 6.2145 4.9972 0.8414 33 1 8.4745 4.7558 1.7885 34 1 10.0994 3.2509 2.7831 35 1 9.5737 1.7981 3.6671 36 1 10.3116 3.5216 5.1470 37 1 7.2179 1.2692 3.8989 38 1 4.9554 1.5157 2.9588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305856406.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:10 Heat of formation + Delta-G solvation = -82.564507 kcal Electronic energy + Delta-G solvation = -21820.126499 eV Core-core repulsion = 18435.783318 eV Total energy + Delta-G solvation = -3384.343180 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.23551 -38.87458 -36.80120 -35.81506 -34.58456 -32.34561 -30.66292 -30.51118 -28.32629 -26.93355 -25.96070 -24.30885 -22.29240 -21.90406 -20.32295 -19.63860 -17.48739 -16.94203 -16.33205 -15.93200 -15.47373 -15.33364 -15.09592 -14.81385 -14.66395 -13.80214 -13.67227 -13.36625 -13.20743 -12.96430 -12.62815 -12.33434 -12.09903 -11.67105 -11.41225 -11.14640 -11.10647 -10.88004 -10.72837 -10.55572 -10.36233 -10.12227 -10.09500 -10.00663 -9.64484 -9.18055 -8.57063 -8.47433 -8.21228 -7.07822 -5.93029 -3.26140 1.68775 1.85508 3.35366 3.42464 3.43902 3.82152 3.95175 4.09046 4.46657 4.58573 5.01586 5.08509 5.26567 5.35629 5.39360 5.43651 5.47954 5.60384 5.78481 5.84272 5.94051 5.97321 6.07718 6.17243 6.29327 6.39196 6.52124 6.56746 6.71115 6.89201 6.91002 7.02364 7.21829 7.43324 7.53673 7.66383 7.74379 8.16244 8.99745 9.34463 9.68592 10.11375 11.17880 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016303 B = 0.005414 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.083182 B = 5170.241490 C = 6433.379862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.383 6.383 3 C 0.464 3.536 4 O -0.506 6.506 5 C 0.190 3.810 6 N -0.558 5.558 7 C -0.254 4.254 8 H 0.080 0.920 9 C 0.002 3.998 10 N -0.903 5.903 11 Si 0.909 3.091 12 H -0.287 1.287 13 H -0.293 1.293 14 H -0.279 1.279 15 C 0.178 3.822 16 C -0.069 4.069 17 C -0.104 4.104 18 C -0.103 4.103 19 C -0.113 4.113 20 C 0.121 3.879 21 O -0.569 6.569 22 C -0.103 4.103 23 C -0.118 4.118 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.051 0.949 29 H 0.257 0.743 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.374 0.626 37 H 0.114 0.886 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.911 -2.263 10.039 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.304 3.696 4 O -0.391 6.391 5 C 0.060 3.940 6 N -0.277 5.277 7 C -0.382 4.382 8 H 0.098 0.902 9 C -0.196 4.196 10 N -0.547 5.547 11 Si 0.739 3.261 12 H -0.214 1.214 13 H -0.219 1.219 14 H -0.205 1.205 15 C 0.052 3.948 16 C -0.071 4.071 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.114 4.114 20 C 0.044 3.956 21 O -0.374 6.374 22 C -0.121 4.121 23 C -0.136 4.136 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.221 0.779 37 H 0.132 0.868 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.964 -1.861 9.708 12.092 hybrid contribution 0.595 0.073 -1.026 1.188 sum 7.559 -1.788 8.682 11.650 Atomic orbital electron populations 1.22861 0.79807 1.01342 1.01277 1.86545 1.20998 1.36745 1.85729 1.25609 0.93574 0.80187 0.70251 1.90468 1.66709 1.36480 1.45447 1.20293 0.85299 0.86787 1.01613 1.43874 1.74791 1.07004 1.02013 1.19260 1.29017 1.07225 0.82708 0.90216 1.24821 0.96734 1.00077 0.97941 1.69876 1.24889 1.34091 1.25874 0.86178 0.79125 0.78125 0.82700 1.21358 1.21903 1.20462 1.19834 0.89606 0.97362 0.88030 1.21063 0.98854 0.93502 0.93725 1.21036 0.92498 0.99636 0.99054 1.20940 0.96871 0.96960 0.97303 1.19407 0.94753 0.97360 0.99852 1.20960 0.94288 0.95021 0.85308 1.86607 1.37921 1.75341 1.37534 1.20889 0.93039 0.98719 0.99464 1.21009 0.96350 0.98124 0.98166 0.93608 0.92844 0.90107 0.86823 0.93087 0.93248 0.93273 0.91930 0.86082 0.86801 0.93139 0.93156 0.77938 0.86816 0.86479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.82 16 2 O -0.38 -8.32 10.56 -39.25 -0.41 -8.74 16 3 C 0.46 11.32 6.18 36.00 0.22 11.54 16 4 O -0.51 -13.88 15.89 -18.76 -0.30 -14.18 16 5 C 0.19 4.42 5.48 -5.19 -0.03 4.39 16 6 N -0.56 -13.43 2.01 -175.99 -0.35 -13.78 16 7 C -0.25 -6.67 9.66 -15.06 -0.15 -6.82 16 8 H 0.08 2.05 7.92 -52.49 -0.42 1.64 16 9 C 0.00 0.06 4.86 -17.43 -0.08 -0.02 16 10 N -0.90 -25.47 9.31 55.49 0.52 -24.95 16 11 Si 0.91 21.46 29.61 -169.99 -5.03 16.43 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.18 3.67 5.76 -5.20 -0.03 3.64 16 16 C -0.07 -1.25 5.46 -104.62 -0.57 -1.82 16 17 C -0.10 -1.79 9.70 -39.58 -0.38 -2.18 16 18 C -0.10 -1.59 9.70 -39.58 -0.38 -1.98 16 19 C -0.11 -1.68 5.51 -104.63 -0.58 -2.25 16 20 C 0.12 1.38 7.17 36.01 0.26 1.64 16 21 O -0.57 -6.55 13.64 -35.23 -0.48 -7.03 16 22 C -0.10 -1.54 9.70 -39.58 -0.38 -1.93 16 23 C -0.12 -1.94 9.70 -39.58 -0.38 -2.32 16 24 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 25 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.11 2.87 6.35 -51.93 -0.33 2.54 16 28 H 0.05 1.03 8.11 -51.93 -0.42 0.60 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 31 H 0.06 1.31 7.98 -51.93 -0.41 0.89 16 32 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.37 2.27 9.12 45.56 0.42 2.68 16 37 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -32.99 330.43 -7.03 -40.02 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.52 Total: 3.53 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -1.43 Total: 3.71 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.16 Total: -38.73 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -1.19 Total: -29.94 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.99 -7.03 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305856406.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.544 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds