Wall clock time and date at job start Wed Apr 15 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00494 * 2 1 4 4 C 1.53006 * 109.47091 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47082 * 65.00393 * 4 3 2 6 6 N 1.41598 * 114.00022 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99796 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00209 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99775 * 179.97438 * 7 6 5 10 10 H 1.09009 * 109.47235 * 299.99525 * 9 7 6 11 11 C 1.50699 * 109.47431 * 60.00055 * 9 7 6 12 12 H 1.08000 * 119.99386 * 33.93531 * 11 9 7 13 13 C 1.37870 * 119.99944 * 213.94074 * 11 9 7 14 14 N 1.31516 * 120.00394 * 6.38736 * 13 11 9 15 15 Si 1.86807 * 119.99949 * 186.38643 * 13 11 9 16 16 H 1.48510 * 109.46816 * 59.99846 * 15 13 11 17 17 H 1.48496 * 109.47300 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46941 * 300.00326 * 15 13 11 19 19 C 1.50707 * 109.47293 * 180.02562 * 9 7 6 20 20 C 1.38234 * 119.99573 * 293.84723 * 19 9 7 21 21 C 1.38234 * 119.99628 * 179.80664 * 20 19 9 22 22 C 1.38233 * 120.00275 * 0.40032 * 21 20 19 23 23 C 1.38233 * 119.99703 * 359.85438 * 22 21 20 24 24 C 1.38230 * 120.00219 * 359.95383 * 23 22 21 25 25 H 1.08993 * 109.47701 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46675 * 299.99922 * 1 2 3 27 27 H 1.09001 * 109.46673 * 59.99279 * 1 2 3 28 28 H 1.08998 * 109.47083 * 60.00291 * 3 2 1 29 29 H 1.08992 * 109.47245 * 300.00434 * 3 2 1 30 30 H 1.08995 * 109.46867 * 305.00043 * 4 3 2 31 31 H 1.09005 * 109.46781 * 185.00036 * 4 3 2 32 32 H 0.96995 * 119.99766 * 359.97438 * 6 5 4 33 33 H 0.97002 * 119.99964 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.00311 * 359.97438 * 20 19 9 35 35 H 1.08003 * 120.00132 * 180.23113 * 21 20 19 36 36 H 1.07997 * 120.00256 * 179.82847 * 22 21 20 37 37 H 1.08004 * 120.00001 * 179.97438 * 23 22 21 38 38 H 1.08007 * 120.00343 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 -0.0006 5 8 3.9649 0.5795 -1.2220 6 7 5.3683 0.4203 -1.3237 7 6 5.9049 -0.1384 -2.4266 8 8 5.1858 -0.5044 -3.3321 9 6 7.3984 -0.3073 -2.5351 10 1 7.8799 0.6688 -2.4735 11 6 7.8883 -1.1811 -1.4092 12 1 7.2677 -1.9840 -1.0397 13 6 9.1285 -0.9553 -0.8510 14 7 9.8309 0.0962 -1.2124 15 14 9.8115 -2.1431 0.4189 16 1 9.9293 -3.4961 -0.1819 17 1 11.1509 -1.6789 0.8610 18 1 8.8966 -2.1983 1.5874 19 6 7.7366 -0.9512 -3.8550 20 6 7.3431 -2.2514 -4.1106 21 6 7.6498 -2.8407 -5.3229 22 6 8.3573 -2.1326 -6.2762 23 6 8.7554 -0.8342 -6.0185 24 6 8.4453 -0.2435 -4.8079 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.6888 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8515 0.5680 0.8409 31 1 3.9787 2.1763 0.0889 32 1 5.9433 0.7133 -0.5996 33 1 10.7033 0.2552 -0.8193 34 1 6.7936 -2.8060 -3.3643 35 1 7.3391 -3.8553 -5.5241 36 1 8.5994 -2.5939 -7.2223 37 1 9.3086 -0.2811 -6.7632 38 1 8.7560 0.7711 -4.6066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156640795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:38 Heat of formation + Delta-G solvation = -55.705398 kcal Electronic energy + Delta-G solvation = -21447.745261 eV Core-core repulsion = 18064.566779 eV Total energy + Delta-G solvation = -3383.178482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.03104 -38.24394 -37.59708 -36.25801 -33.68266 -31.79796 -31.08456 -29.93763 -29.43541 -27.12732 -26.30826 -23.91167 -22.64484 -21.61294 -21.09679 -19.35193 -17.77152 -16.83143 -16.75955 -16.03745 -15.87126 -15.64912 -15.06279 -14.72019 -14.51209 -14.23756 -13.93854 -13.45889 -13.15140 -12.73086 -12.52579 -12.45323 -12.30426 -11.71518 -11.65123 -11.56283 -11.37747 -11.05552 -11.04654 -10.59712 -10.41018 -10.28926 -10.02568 -9.80290 -9.49413 -8.81746 -8.63765 -8.10592 -7.94274 -7.64566 -6.32443 -4.38319 2.29704 2.38780 2.71447 3.20335 3.25737 3.29255 3.65775 3.76499 4.26696 4.77421 4.84854 4.91488 5.05554 5.12130 5.18148 5.24936 5.36196 5.48253 5.57374 5.72440 5.72961 5.79482 5.89185 6.11783 6.21949 6.49099 6.57509 6.84345 6.95063 7.02975 7.14516 7.36972 7.43085 7.55230 7.60120 7.72006 7.92474 8.03637 8.24180 8.67131 9.25587 9.32812 10.75953 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.005341 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.789639 B = 5241.566350 C = 6579.495777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.035 3.965 5 O -0.153 6.153 6 N -0.594 5.594 7 C 0.538 3.462 8 O -0.549 6.549 9 C 0.064 3.936 10 H 0.096 0.904 11 C -0.521 4.521 12 H 0.065 0.935 13 C 0.077 3.923 14 N -0.879 5.879 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.014 4.014 20 C -0.083 4.083 21 C -0.134 4.134 22 C -0.146 4.146 23 C -0.132 4.132 24 C -0.118 4.118 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.269 0.731 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 3.298 2.145 9.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.008 4.008 4 C -0.043 4.043 5 O -0.156 6.156 6 N -0.298 5.298 7 C 0.328 3.672 8 O -0.425 6.425 9 C 0.042 3.958 10 H 0.114 0.886 11 C -0.559 4.559 12 H 0.083 0.917 13 C -0.128 4.128 14 N -0.514 5.514 15 Si 0.726 3.274 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.015 4.015 20 C -0.101 4.101 21 C -0.152 4.152 22 C -0.164 4.164 23 C -0.150 4.150 24 C -0.136 4.136 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.252 0.748 33 H 0.079 0.921 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.252 2.915 1.372 9.797 hybrid contribution 0.481 -0.121 1.378 1.464 sum -8.771 2.794 2.749 9.607 Atomic orbital electron populations 1.22740 0.81144 1.02893 0.99717 1.88021 1.19546 1.27134 1.95338 1.22478 0.91564 0.85671 1.01093 1.22889 0.93641 0.98471 0.89331 1.90577 1.05318 1.83478 1.36247 1.47885 0.93228 1.66282 1.22428 1.22052 0.91717 0.74392 0.79053 1.90608 1.62993 1.49865 1.39065 1.18069 0.84788 1.00676 0.92266 0.88594 1.20700 1.02741 1.16177 1.16270 0.91680 1.24953 0.96574 0.94940 0.96375 1.69865 1.12868 1.25818 1.42890 0.86523 0.78172 0.81546 0.81138 1.19758 1.21048 1.19940 1.19951 0.94009 0.93760 0.93812 1.20867 0.98298 0.95059 0.95849 1.20967 1.00373 0.99241 0.94637 1.20820 1.01442 0.95269 0.98910 1.20899 1.01479 0.95490 0.97179 1.20991 0.99669 0.99726 0.93193 0.89566 0.94275 0.94003 0.91347 0.92169 0.91417 0.90934 0.74793 0.92124 0.86905 0.87460 0.87621 0.87441 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.49 10.67 -40.08 -0.43 -5.91 16 3 C 0.07 0.83 6.32 37.16 0.23 1.06 16 4 C 0.03 0.48 6.61 37.16 0.25 0.72 16 5 O -0.15 -3.02 11.07 -34.83 -0.39 -3.41 16 6 N -0.59 -12.24 6.29 31.22 0.20 -12.05 16 7 C 0.54 12.83 7.19 -10.99 -0.08 12.75 16 8 O -0.55 -14.69 15.83 -12.64 -0.20 -14.89 16 9 C 0.06 1.53 2.44 -94.07 -0.23 1.30 16 10 H 0.10 2.38 7.00 -51.92 -0.36 2.01 16 11 C -0.52 -13.02 7.46 -34.44 -0.26 -13.28 16 12 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 13 C 0.08 1.92 5.45 -17.82 -0.10 1.82 16 14 N -0.88 -22.67 12.78 55.43 0.71 -21.96 16 15 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 C -0.01 -0.34 4.30 -104.62 -0.45 -0.79 16 20 C -0.08 -1.89 8.31 -39.58 -0.33 -2.22 16 21 C -0.13 -2.68 10.05 -39.58 -0.40 -3.08 16 22 C -0.15 -2.73 10.05 -39.59 -0.40 -3.13 16 23 C -0.13 -2.56 10.05 -39.59 -0.40 -2.95 16 24 C -0.12 -2.57 9.67 -39.59 -0.38 -2.95 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.41 7.55 8.43 -40.82 -0.34 7.21 16 33 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 34 H 0.11 2.63 7.89 -52.49 -0.41 2.22 16 35 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.11 2.36 7.95 -52.48 -0.42 1.94 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -31.56 334.98 -6.82 -38.38 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.31 Total: 9.34 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -1.42 Total: -9.32 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.90 Total: -34.01 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.01 Total: -24.21 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.56 -6.82 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156640795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.328 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds