Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00494 * 2 1 4 4 C 1.53006 * 109.47091 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47082 * 65.00393 * 4 3 2 6 6 N 1.41598 * 114.00022 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99796 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00209 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99775 * 179.97438 * 7 6 5 10 10 H 1.09009 * 109.47235 * 299.99525 * 9 7 6 11 11 C 1.50699 * 109.47431 * 60.00055 * 9 7 6 12 12 H 1.08000 * 119.99386 * 33.93531 * 11 9 7 13 13 C 1.37870 * 119.99944 * 213.94074 * 11 9 7 14 14 N 1.31516 * 120.00394 * 6.38736 * 13 11 9 15 15 Si 1.86807 * 119.99949 * 186.38643 * 13 11 9 16 16 H 1.48510 * 109.46816 * 59.99846 * 15 13 11 17 17 H 1.48496 * 109.47300 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46941 * 300.00326 * 15 13 11 19 19 C 1.50707 * 109.47293 * 180.02562 * 9 7 6 20 20 C 1.38234 * 119.99573 * 293.84723 * 19 9 7 21 21 C 1.38234 * 119.99628 * 179.80664 * 20 19 9 22 22 C 1.38233 * 120.00275 * 0.40032 * 21 20 19 23 23 C 1.38233 * 119.99703 * 359.85438 * 22 21 20 24 24 C 1.38230 * 120.00219 * 359.95383 * 23 22 21 25 25 H 1.08993 * 109.47701 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46675 * 299.99922 * 1 2 3 27 27 H 1.09001 * 109.46673 * 59.99279 * 1 2 3 28 28 H 1.08998 * 109.47083 * 60.00291 * 3 2 1 29 29 H 1.08992 * 109.47245 * 300.00434 * 3 2 1 30 30 H 1.08995 * 109.46867 * 305.00043 * 4 3 2 31 31 H 1.09005 * 109.46781 * 185.00036 * 4 3 2 32 32 H 0.96995 * 119.99766 * 359.97438 * 6 5 4 33 33 H 0.97002 * 119.99964 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.00311 * 359.97438 * 20 19 9 35 35 H 1.08003 * 120.00132 * 180.23113 * 21 20 19 36 36 H 1.07997 * 120.00256 * 179.82847 * 22 21 20 37 37 H 1.08004 * 120.00001 * 179.97438 * 23 22 21 38 38 H 1.08007 * 120.00343 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1844 -0.0006 5 8 3.9649 0.5795 -1.2220 6 7 5.3683 0.4203 -1.3237 7 6 5.9049 -0.1384 -2.4266 8 8 5.1858 -0.5044 -3.3321 9 6 7.3984 -0.3073 -2.5351 10 1 7.8799 0.6688 -2.4735 11 6 7.8883 -1.1811 -1.4092 12 1 7.2677 -1.9840 -1.0397 13 6 9.1285 -0.9553 -0.8510 14 7 9.8309 0.0962 -1.2124 15 14 9.8115 -2.1431 0.4189 16 1 9.9293 -3.4961 -0.1819 17 1 11.1509 -1.6789 0.8610 18 1 8.8966 -2.1983 1.5874 19 6 7.7366 -0.9512 -3.8550 20 6 7.3431 -2.2514 -4.1106 21 6 7.6498 -2.8407 -5.3229 22 6 8.3573 -2.1326 -6.2762 23 6 8.7554 -0.8342 -6.0185 24 6 8.4453 -0.2435 -4.8079 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.6888 1.8463 0.8900 29 1 1.6887 1.8463 -0.8899 30 1 3.8515 0.5680 0.8409 31 1 3.9787 2.1763 0.0889 32 1 5.9433 0.7133 -0.5996 33 1 10.7033 0.2552 -0.8193 34 1 6.7936 -2.8060 -3.3643 35 1 7.3391 -3.8553 -5.5241 36 1 8.5994 -2.5939 -7.2223 37 1 9.3086 -0.2811 -6.7632 38 1 8.7560 0.7711 -4.6066 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156640795.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -75.390614 kcal Electronic energy + Delta-G solvation = -21448.598876 eV Core-core repulsion = 18064.566779 eV Total energy + Delta-G solvation = -3384.032097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78270 -39.53062 -38.99642 -37.73327 -35.56750 -33.40951 -32.78793 -31.53994 -30.68479 -28.84692 -27.18352 -25.78926 -23.72098 -23.23583 -22.75495 -21.09644 -19.26150 -18.70459 -17.84673 -17.71981 -17.42040 -16.73100 -16.40771 -16.15825 -16.02014 -15.80609 -15.56481 -15.05185 -14.78944 -14.20105 -14.04640 -14.03150 -13.41454 -13.38902 -13.25816 -12.86806 -12.78337 -12.65097 -12.42641 -12.18958 -11.98320 -11.88864 -11.67966 -11.31984 -10.74435 -10.69865 -10.53686 -9.77084 -9.55965 -9.30059 -8.24339 -6.35657 0.69885 0.76321 1.18264 1.44215 1.47121 1.53551 1.89127 2.42272 2.79169 3.04846 3.22999 3.66953 3.92995 4.12852 4.20053 4.28968 4.30296 4.37526 4.44592 4.45950 4.50031 4.50697 4.54257 4.70314 4.83082 4.86614 4.94934 5.08671 5.34530 5.43274 5.62980 5.78145 5.80659 5.87870 5.96741 6.18381 6.20097 6.38397 6.53459 6.71767 7.31280 7.53363 8.83781 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.005341 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.789639 B = 5241.566350 C = 6579.495777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.070 3.930 4 C 0.023 3.977 5 O -0.179 6.179 6 N -0.584 5.584 7 C 0.536 3.464 8 O -0.585 6.585 9 C 0.069 3.931 10 H 0.081 0.919 11 C -0.526 4.526 12 H 0.052 0.948 13 C 0.042 3.958 14 N -0.901 5.901 15 Si 0.953 3.047 16 H -0.279 1.279 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.044 4.044 20 C -0.111 4.111 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.128 4.128 24 C -0.140 4.140 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.420 0.580 33 H 0.271 0.729 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 3.262 2.015 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.007 4.007 4 C -0.054 4.054 5 O -0.183 6.183 6 N -0.287 5.287 7 C 0.326 3.674 8 O -0.464 6.464 9 C 0.047 3.953 10 H 0.099 0.901 11 C -0.564 4.564 12 H 0.071 0.929 13 C -0.161 4.161 14 N -0.537 5.537 15 Si 0.778 3.222 16 H -0.204 1.204 17 H -0.204 1.204 18 H -0.190 1.190 19 C -0.045 4.045 20 C -0.129 4.129 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.146 4.146 24 C -0.158 4.158 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.263 0.737 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.267 2.906 1.287 9.797 hybrid contribution 0.384 -0.070 1.416 1.469 sum -8.883 2.835 2.703 9.708 Atomic orbital electron populations 1.22932 0.79137 1.03730 1.01193 1.87959 1.21931 1.28703 1.95680 1.22651 0.89724 0.85249 1.03091 1.23360 0.95420 0.99547 0.87095 1.90560 1.03729 1.84424 1.39540 1.47577 0.94610 1.64783 1.21691 1.21999 0.91717 0.74346 0.79367 1.90563 1.63735 1.51658 1.40493 1.17949 0.84788 0.99724 0.92818 0.90089 1.20712 1.02974 1.15910 1.16797 0.92949 1.25526 0.96588 0.96091 0.97875 1.69944 1.13104 1.26854 1.43838 0.85680 0.77858 0.79265 0.79349 1.20447 1.20407 1.19047 1.20051 0.95587 0.94542 0.94328 1.20885 0.99689 0.95159 0.97169 1.21333 0.99794 1.00628 0.93623 1.21309 0.99624 0.94826 1.00004 1.21330 1.00608 0.96055 0.96631 1.21175 1.00268 1.00026 0.94310 0.89216 0.91769 0.93468 0.87236 0.92027 0.91199 0.88080 0.73724 0.91986 0.88843 0.84651 0.83328 0.83861 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.73 16 2 O -0.42 -11.82 10.67 -144.35 -1.54 -13.36 16 3 C 0.07 1.55 6.32 71.98 0.45 2.01 16 4 C 0.02 0.60 6.61 71.98 0.48 1.08 16 5 O -0.18 -7.13 11.07 -16.44 -0.18 -7.31 16 6 N -0.58 -24.73 6.29 -173.54 -1.09 -25.82 16 7 C 0.54 26.60 7.19 87.66 0.63 27.23 16 8 O -0.59 -32.56 15.83 14.36 0.23 -32.33 16 9 C 0.07 3.44 2.44 -13.03 -0.03 3.41 16 10 H 0.08 4.21 7.00 -2.38 -0.02 4.19 16 11 C -0.53 -27.08 7.46 25.60 0.19 -26.88 16 12 H 0.05 2.77 7.82 -2.91 -0.02 2.74 16 13 C 0.04 2.13 5.45 84.65 0.46 2.59 16 14 N -0.90 -47.01 12.78 21.44 0.27 -46.74 16 15 Si 0.95 40.65 29.54 68.60 2.03 42.68 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 C -0.04 -2.15 4.30 -19.86 -0.09 -2.23 16 20 C -0.11 -5.19 8.31 22.27 0.19 -5.01 16 21 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 22 C -0.14 -4.81 10.05 22.27 0.22 -4.59 16 23 C -0.13 -4.68 10.05 22.27 0.22 -4.46 16 24 C -0.14 -6.13 9.67 22.27 0.22 -5.91 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.42 15.80 8.43 -92.71 -0.78 15.02 16 33 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.09 4.59 7.89 -2.91 -0.02 4.57 16 35 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 36 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 37 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.11 4.81 7.95 -2.91 -0.02 4.78 16 Total: -1.00 -69.77 334.98 4.41 -65.36 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.28 Total: 33.60 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.42 Total: -16.08 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -0.82 Total: -72.56 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -1.49 Total: -53.00 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -69.77 4.41 -65.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156640795.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.030 kcal (2) G-P(sol) polarization free energy of solvation -69.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds