Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00401 * 2 1 4 4 C 1.52996 * 109.47570 * 180.02562 * 3 2 1 5 5 O 1.45205 * 109.46885 * 64.99820 * 4 3 2 6 6 C 1.34667 * 116.99722 * 180.02562 * 5 4 3 7 7 O 1.21500 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99654 * 180.02562 * 6 5 4 9 9 C 1.37197 * 120.00060 * 0.02562 * 8 6 5 10 10 H 1.08002 * 119.99914 * 135.59744 * 9 8 6 11 11 C 1.38878 * 120.00137 * 315.59188 * 9 8 6 12 12 N 1.31465 * 120.00290 * 155.77239 * 11 9 8 13 13 Si 1.86800 * 119.99973 * 335.77935 * 11 9 8 14 14 H 1.48496 * 109.47586 * 93.62567 * 13 11 9 15 15 H 1.48501 * 109.47012 * 213.62690 * 13 11 9 16 16 H 1.48507 * 109.47087 * 333.62663 * 13 11 9 17 17 C 1.46498 * 119.99841 * 179.97438 * 8 6 5 18 18 C 1.50704 * 109.47532 * 266.20053 * 17 8 6 19 19 C 1.38234 * 119.99674 * 90.83115 * 18 17 8 20 20 C 1.38235 * 119.99919 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99852 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.00075 * 0.27210 * 21 20 19 23 23 C 1.38233 * 119.99804 * 270.81005 * 18 17 8 24 24 H 1.09004 * 109.47379 * 59.99401 * 1 2 3 25 25 H 1.08997 * 109.47649 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46892 * 299.99947 * 1 2 3 27 27 H 1.09004 * 109.46827 * 59.99849 * 3 2 1 28 28 H 1.09002 * 109.46951 * 300.00317 * 3 2 1 29 29 H 1.09004 * 109.46743 * 305.00504 * 4 3 2 30 30 H 1.08996 * 109.47085 * 184.99919 * 4 3 2 31 31 H 0.96999 * 120.00069 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47006 * 146.20318 * 17 8 6 33 33 H 1.08997 * 109.47241 * 26.20352 * 17 8 6 34 34 H 1.08000 * 120.00419 * 359.97438 * 19 18 17 35 35 H 1.07999 * 120.00314 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.00152 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.00436 * 179.72546 * 22 21 20 38 38 H 1.07994 * 120.00224 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9717 0.5699 -1.2417 6 6 5.2966 0.3897 -1.4019 7 8 6.0669 0.7362 -0.5285 8 7 5.7681 -0.1751 -2.5312 9 6 4.8983 -0.5659 -3.5176 10 1 5.1178 -0.3417 -4.5510 11 6 3.7357 -1.2499 -3.1873 12 7 2.6996 -1.2139 -3.9957 13 14 3.6440 -2.2211 -1.5942 14 1 3.0585 -1.3692 -0.5281 15 1 2.7912 -3.4202 -1.7939 16 1 5.0096 -2.6459 -1.1941 17 6 7.2094 -0.3706 -2.7058 18 6 7.7897 0.8052 -3.4487 19 6 8.2731 1.8947 -2.7487 20 6 8.8058 2.9731 -3.4301 21 6 8.8555 2.9616 -4.8115 22 6 8.3674 1.8743 -5.5117 23 6 7.8388 0.7939 -4.8301 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9785 2.1765 0.0889 31 1 1.8874 -1.6914 -3.7647 32 1 7.3859 -1.2831 -3.2753 33 1 7.6858 -0.4541 -1.7290 34 1 8.2347 1.9036 -1.6694 35 1 9.1831 3.8245 -2.8833 36 1 9.2721 3.8039 -5.3439 37 1 8.4022 1.8672 -6.5911 38 1 7.4617 -0.0576 -5.3770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193399338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -79.899498 kcal Electronic energy + Delta-G solvation = -22436.767981 eV Core-core repulsion = 19052.540364 eV Total energy + Delta-G solvation = -3384.227617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.63892 -38.61985 -37.53786 -35.81454 -34.60124 -32.22888 -30.87786 -30.42206 -29.93411 -26.23129 -25.89295 -24.28063 -22.35613 -22.06361 -21.08360 -19.84213 -18.39884 -16.65281 -16.41529 -16.34699 -15.44673 -15.38243 -15.06487 -14.70271 -14.68888 -14.45972 -14.26030 -13.38161 -12.95313 -12.92445 -12.52860 -12.44457 -12.19269 -12.02723 -11.83311 -11.31130 -11.17816 -11.09424 -10.81820 -10.74345 -10.44998 -10.16538 -10.01304 -9.49531 -9.44271 -9.28220 -8.69209 -8.44807 -8.27304 -7.69643 -6.28197 -3.99851 1.77382 1.87624 3.18503 3.51117 3.64011 3.65131 3.95963 4.11454 4.30102 4.52672 5.11919 5.24245 5.27759 5.32216 5.32877 5.44022 5.51493 5.54364 5.63030 5.64542 5.79036 5.83337 5.89348 5.94248 5.99939 6.10792 6.17167 6.38825 6.48990 6.54690 6.91666 6.91796 7.17691 7.35316 7.45412 7.47208 7.69112 7.89952 8.58854 9.06218 9.39687 9.83918 10.80582 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.006032 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.453520 B = 4640.437862 C = 5167.135787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.064 3.936 4 C 0.083 3.917 5 O -0.329 6.329 6 C 0.614 3.386 7 O -0.626 6.626 8 N -0.443 5.443 9 C -0.362 4.362 10 H 0.098 0.902 11 C 0.099 3.901 12 N -0.854 5.854 13 Si 0.853 3.147 14 H -0.216 1.216 15 H -0.297 1.297 16 H -0.281 1.281 17 C 0.160 3.840 18 C -0.086 4.086 19 C -0.100 4.100 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.095 4.095 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.272 0.728 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 5.312 3.455 6.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C -0.013 4.013 4 C 0.007 3.993 5 O -0.242 6.242 6 C 0.371 3.629 7 O -0.522 6.522 8 N -0.171 5.171 9 C -0.488 4.488 10 H 0.115 0.885 11 C -0.110 4.110 12 N -0.488 5.488 13 Si 0.680 3.320 14 H -0.140 1.140 15 H -0.224 1.224 16 H -0.206 1.206 17 C 0.038 3.962 18 C -0.087 4.087 19 C -0.119 4.119 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.113 4.113 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.675 5.196 3.670 6.901 hybrid contribution -0.478 -0.266 0.661 0.858 sum 2.197 4.929 4.331 6.920 Atomic orbital electron populations 1.22708 0.82177 1.02466 0.99450 1.88238 1.18731 1.26703 1.95236 1.22552 0.92317 0.85830 1.00619 1.22696 0.92285 0.97965 0.86311 1.86652 1.23449 1.74885 1.39253 1.18189 0.80993 0.79372 0.84387 1.90785 1.57624 1.59188 1.44586 1.42494 1.04488 1.55153 1.14939 1.18831 1.01255 1.39515 0.89199 0.88479 1.25244 0.94297 0.94503 0.96999 1.69821 1.02002 1.38545 1.38431 0.87146 0.78231 0.79928 0.86743 1.14002 1.22418 1.20604 1.20408 0.81549 0.94647 0.99575 1.20390 0.97236 0.96990 0.94080 1.21202 0.97259 0.93073 1.00354 1.21057 1.01095 0.98383 0.94390 1.21028 1.01063 0.98249 0.94357 1.21072 0.99934 0.94287 0.99429 1.21139 0.97642 0.98659 0.93887 0.93965 0.90040 0.94735 0.91898 0.92079 0.91551 0.90626 0.91818 0.89771 0.90389 0.85765 0.86763 0.86876 0.86592 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -7.00 8.61 -38.79 -0.33 -7.33 16 3 C 0.06 1.06 6.33 37.16 0.24 1.29 16 4 C 0.08 1.63 5.36 37.16 0.20 1.83 16 5 O -0.33 -8.12 5.75 -43.18 -0.25 -8.37 16 6 C 0.61 15.67 6.63 54.05 0.36 16.03 16 7 O -0.63 -15.96 15.63 -19.27 -0.30 -16.27 16 8 N -0.44 -11.13 2.09 -121.52 -0.25 -11.39 16 9 C -0.36 -9.91 9.61 -14.91 -0.14 -10.05 16 10 H 0.10 2.77 8.06 -52.49 -0.42 2.35 16 11 C 0.10 2.77 4.62 -17.47 -0.08 2.69 16 12 N -0.85 -24.62 13.96 55.49 0.77 -23.85 16 13 Si 0.85 21.91 25.33 -169.99 -4.31 17.61 16 14 H -0.22 -5.38 3.69 56.52 0.21 -5.17 16 15 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 16 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16 17 C 0.16 3.39 5.55 -5.19 -0.03 3.36 16 18 C -0.09 -1.66 5.44 -104.62 -0.57 -2.23 16 19 C -0.10 -1.83 9.70 -39.58 -0.38 -2.21 16 20 C -0.13 -2.06 10.05 -39.58 -0.40 -2.46 16 21 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 23 C -0.09 -1.69 9.71 -39.58 -0.38 -2.07 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 32 H 0.08 1.65 8.02 -51.93 -0.42 1.23 16 33 H 0.08 1.62 7.25 -51.93 -0.38 1.24 16 34 H 0.12 2.32 8.03 -52.49 -0.42 1.90 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -32.67 322.25 -6.31 -38.97 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.62 Total: 2.77 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.88 Total: 2.98 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.52 Total: -35.23 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.88 Total: -31.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.31 Total: 17.61 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.67 -6.31 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193399338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.925 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds