Wall clock time and date at job start Wed Apr 15 2020 11:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 114.00401 * 2 1 4 4 C 1.52996 * 109.47570 * 180.02562 * 3 2 1 5 5 O 1.45205 * 109.46885 * 64.99820 * 4 3 2 6 6 C 1.34667 * 116.99722 * 180.02562 * 5 4 3 7 7 O 1.21500 * 120.00054 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99654 * 180.02562 * 6 5 4 9 9 C 1.37197 * 120.00060 * 0.02562 * 8 6 5 10 10 H 1.08002 * 119.99914 * 135.59744 * 9 8 6 11 11 C 1.38878 * 120.00137 * 315.59188 * 9 8 6 12 12 N 1.31465 * 120.00290 * 155.77239 * 11 9 8 13 13 Si 1.86800 * 119.99973 * 335.77935 * 11 9 8 14 14 H 1.48496 * 109.47586 * 93.62567 * 13 11 9 15 15 H 1.48501 * 109.47012 * 213.62690 * 13 11 9 16 16 H 1.48507 * 109.47087 * 333.62663 * 13 11 9 17 17 C 1.46498 * 119.99841 * 179.97438 * 8 6 5 18 18 C 1.50704 * 109.47532 * 266.20053 * 17 8 6 19 19 C 1.38234 * 119.99674 * 90.83115 * 18 17 8 20 20 C 1.38235 * 119.99919 * 179.97438 * 19 18 17 21 21 C 1.38233 * 119.99852 * 359.97438 * 20 19 18 22 22 C 1.38228 * 120.00075 * 0.27210 * 21 20 19 23 23 C 1.38233 * 119.99804 * 270.81005 * 18 17 8 24 24 H 1.09004 * 109.47379 * 59.99401 * 1 2 3 25 25 H 1.08997 * 109.47649 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46892 * 299.99947 * 1 2 3 27 27 H 1.09004 * 109.46827 * 59.99849 * 3 2 1 28 28 H 1.09002 * 109.46951 * 300.00317 * 3 2 1 29 29 H 1.09004 * 109.46743 * 305.00504 * 4 3 2 30 30 H 1.08996 * 109.47085 * 184.99919 * 4 3 2 31 31 H 0.96999 * 120.00069 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.47006 * 146.20318 * 17 8 6 33 33 H 1.08997 * 109.47241 * 26.20352 * 17 8 6 34 34 H 1.08000 * 120.00419 * 359.97438 * 19 18 17 35 35 H 1.07999 * 120.00314 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.00152 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.00436 * 179.72546 * 22 21 20 38 38 H 1.07994 * 120.00224 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9717 0.5699 -1.2417 6 6 5.2966 0.3897 -1.4019 7 8 6.0669 0.7362 -0.5285 8 7 5.7681 -0.1751 -2.5312 9 6 4.8983 -0.5659 -3.5176 10 1 5.1178 -0.3417 -4.5510 11 6 3.7357 -1.2499 -3.1873 12 7 2.6996 -1.2139 -3.9957 13 14 3.6440 -2.2211 -1.5942 14 1 3.0585 -1.3692 -0.5281 15 1 2.7912 -3.4202 -1.7939 16 1 5.0096 -2.6459 -1.1941 17 6 7.2094 -0.3706 -2.7058 18 6 7.7897 0.8052 -3.4487 19 6 8.2731 1.8947 -2.7487 20 6 8.8058 2.9731 -3.4301 21 6 8.8555 2.9616 -4.8115 22 6 8.3674 1.8743 -5.5117 23 6 7.8388 0.7939 -4.8301 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8514 0.5681 0.8409 30 1 3.9785 2.1765 0.0889 31 1 1.8874 -1.6914 -3.7647 32 1 7.3859 -1.2831 -3.2753 33 1 7.6858 -0.4541 -1.7290 34 1 8.2347 1.9036 -1.6694 35 1 9.1831 3.8245 -2.8833 36 1 9.2721 3.8039 -5.3439 37 1 8.4022 1.8672 -6.5911 38 1 7.4617 -0.0576 -5.3770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193399338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:40 Heat of formation + Delta-G solvation = -99.823292 kcal Electronic energy + Delta-G solvation = -22437.631941 eV Core-core repulsion = 19052.540364 eV Total energy + Delta-G solvation = -3385.091577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.47325 -40.01842 -38.90413 -37.53799 -36.56319 -34.18068 -32.49104 -31.71358 -31.36079 -27.78375 -27.22752 -26.20633 -23.82454 -23.38043 -22.58147 -21.60311 -20.34035 -18.37884 -18.04336 -17.76861 -17.07745 -16.99310 -16.69007 -16.16845 -16.12063 -15.99378 -15.85597 -15.12309 -14.63907 -14.39787 -14.22617 -13.96821 -13.72968 -13.38604 -13.23355 -13.03197 -12.85857 -12.70560 -12.45461 -12.16634 -12.08772 -11.83300 -11.79502 -11.38334 -11.27052 -10.76721 -10.56166 -9.79230 -9.74123 -9.56419 -8.45016 -6.15599 0.43446 0.57370 1.24255 1.43786 1.59306 1.81796 1.99693 2.38628 2.88396 2.95636 3.02584 3.60099 3.97348 3.99061 4.01051 4.14061 4.22394 4.34929 4.35748 4.36531 4.46597 4.53411 4.55474 4.64324 4.71208 4.80949 4.82308 4.83287 5.15811 5.23186 5.45395 5.62568 5.65064 5.72502 5.81354 5.84669 6.19077 6.24776 6.44626 6.99152 7.31494 7.85611 8.67123 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.006032 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.453520 B = 4640.437862 C = 5167.135787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.067 3.933 4 C 0.071 3.929 5 O -0.351 6.351 6 C 0.608 3.392 7 O -0.632 6.632 8 N -0.452 5.452 9 C -0.359 4.359 10 H 0.078 0.922 11 C 0.072 3.928 12 N -0.884 5.884 13 Si 0.895 3.105 14 H -0.204 1.204 15 H -0.297 1.297 16 H -0.294 1.294 17 C 0.159 3.841 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.130 4.130 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.111 4.111 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.275 0.725 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 6.969 3.760 8.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C -0.009 4.009 4 C -0.004 4.004 5 O -0.265 6.265 6 C 0.365 3.635 7 O -0.529 6.529 8 N -0.180 5.180 9 C -0.485 4.485 10 H 0.095 0.905 11 C -0.135 4.135 12 N -0.519 5.519 13 Si 0.721 3.279 14 H -0.127 1.127 15 H -0.224 1.224 16 H -0.221 1.221 17 C 0.038 3.962 18 C -0.110 4.110 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.146 4.146 23 C -0.130 4.130 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.926 6.861 3.985 8.457 hybrid contribution -0.512 -0.677 0.551 1.012 sum 2.414 6.184 4.536 8.040 Atomic orbital electron populations 1.22898 0.79945 1.03356 1.01003 1.88135 1.21269 1.28026 1.95587 1.22666 0.90056 0.85538 1.02614 1.23147 0.94567 0.98362 0.84283 1.86620 1.22800 1.75354 1.41693 1.18406 0.81454 0.79256 0.84431 1.90759 1.57933 1.59533 1.44701 1.42657 1.05719 1.55120 1.14516 1.18683 1.01855 1.39059 0.88897 0.90466 1.25629 0.94119 0.95039 0.98754 1.69866 1.02546 1.39724 1.39813 0.86536 0.77273 0.79048 0.85061 1.12742 1.22415 1.22056 1.20518 0.79441 0.96292 0.99999 1.20259 0.99036 0.96952 0.94755 1.21219 0.98514 0.93944 0.99932 1.21403 0.99946 0.98186 0.95208 1.21488 0.99422 0.98814 0.94064 1.21436 0.98680 0.93529 1.00984 1.21230 0.98619 0.99725 0.93434 0.93973 0.89632 0.91525 0.87218 0.92497 0.91942 0.88955 0.91507 0.89121 0.90594 0.87035 0.83897 0.82980 0.83765 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 11.01 113.37 1.25 1.87 16 2 O -0.41 -14.83 8.61 -145.57 -1.25 -16.08 16 3 C 0.07 2.11 6.33 71.98 0.46 2.56 16 4 C 0.07 2.71 5.36 71.98 0.39 3.10 16 5 O -0.35 -17.30 5.75 -53.11 -0.31 -17.61 16 6 C 0.61 31.28 6.63 129.79 0.86 32.14 16 7 O -0.63 -32.43 15.63 19.84 0.31 -32.12 16 8 N -0.45 -23.11 2.09 -768.77 -1.60 -24.71 16 9 C -0.36 -20.04 9.61 84.01 0.81 -19.24 16 10 H 0.08 4.56 8.06 -2.91 -0.02 4.53 16 11 C 0.07 4.05 4.62 84.90 0.39 4.44 16 12 N -0.88 -51.61 13.96 21.65 0.30 -51.31 16 13 Si 0.89 45.78 25.33 68.60 1.74 47.51 16 14 H -0.20 -10.03 3.69 99.48 0.37 -9.67 16 15 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 16 H -0.29 -15.57 7.11 99.48 0.71 -14.86 16 17 C 0.16 6.88 5.55 85.63 0.48 7.36 16 18 C -0.11 -4.24 5.44 -19.87 -0.11 -4.35 16 19 C -0.12 -4.23 9.70 22.27 0.22 -4.01 16 20 C -0.13 -3.75 10.05 22.27 0.22 -3.53 16 21 C -0.12 -3.13 10.05 22.27 0.22 -2.90 16 22 C -0.13 -3.71 10.05 22.27 0.22 -3.48 16 23 C -0.11 -3.95 9.71 22.27 0.22 -3.73 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.09 3.68 8.02 -2.39 -0.02 3.66 16 33 H 0.08 3.25 7.25 -2.39 -0.02 3.23 16 34 H 0.11 4.21 8.03 -2.91 -0.02 4.19 16 35 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.15 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 38 H 0.12 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -70.78 322.25 5.51 -65.28 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.70 Total: 18.81 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.62 Total: 10.23 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -1.30 Total: -76.02 kcal Atomic # 8 Polarization: -64.56 SS G_CDS: -1.25 Total: -65.81 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.74 Total: 47.51 kcal Total: -70.78 5.51 -65.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193399338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.547 kcal (2) G-P(sol) polarization free energy of solvation -70.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds