Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42891 * 113.99897 * 2 1 4 4 C 1.53005 * 109.47025 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47232 * 65.00032 * 4 3 2 6 6 C 1.36869 * 119.99865 * 269.99963 * 5 4 3 7 7 H 1.08001 * 119.99974 * 139.28056 * 6 5 4 8 8 C 1.39041 * 120.00274 * 319.28539 * 6 5 4 9 9 N 1.31365 * 120.00331 * 161.55508 * 8 6 5 10 10 Si 1.86799 * 119.99942 * 341.55232 * 8 6 5 11 11 H 1.48500 * 109.47249 * 95.26433 * 10 8 6 12 12 H 1.48498 * 109.47464 * 215.26356 * 10 8 6 13 13 H 1.48500 * 109.47069 * 335.26395 * 10 8 6 14 14 C 1.34773 * 120.00332 * 89.99673 * 5 4 3 15 15 O 1.21597 * 119.99903 * 3.71156 * 14 5 4 16 16 C 1.47728 * 120.00343 * 183.70707 * 14 5 4 17 17 C 1.39660 * 120.14848 * 327.81923 * 16 14 5 18 18 C 1.37919 * 119.84751 * 180.02562 * 17 16 14 19 19 C 1.38403 * 120.14503 * 359.73323 * 18 17 16 20 20 C 1.38354 * 120.30570 * 0.54633 * 19 18 17 21 21 C 1.50708 * 119.92028 * 179.72535 * 20 19 18 22 22 O 1.42894 * 109.47200 * 269.72558 * 21 20 19 23 23 C 1.37953 * 120.15244 * 359.44725 * 20 19 18 24 24 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47616 * 300.00049 * 1 2 3 26 26 H 1.09000 * 109.47660 * 60.00531 * 1 2 3 27 27 H 1.08998 * 109.47120 * 60.00017 * 3 2 1 28 28 H 1.09003 * 109.47292 * 299.99813 * 3 2 1 29 29 H 1.09003 * 109.47097 * 304.99905 * 4 3 2 30 30 H 1.09003 * 109.47027 * 185.00068 * 4 3 2 31 31 H 0.97003 * 120.00363 * 180.02562 * 9 8 6 32 32 H 1.07995 * 120.08291 * 0.02562 * 17 16 14 33 33 H 1.07995 * 119.92759 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.84436 * 180.27124 * 19 18 17 35 35 H 1.09005 * 109.46680 * 149.72355 * 21 20 19 36 36 H 1.09001 * 109.47141 * 29.72916 * 21 20 19 37 37 H 0.96693 * 114.00456 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.07356 * 180.25220 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0977 -0.7969 -1.3343 7 1 3.7757 -1.3140 -2.2262 8 6 4.6353 -1.5136 -0.2710 9 7 4.4295 -2.8079 -0.1804 10 14 5.6502 -0.6361 1.0287 11 1 4.7805 -0.2790 2.1782 12 1 6.7409 -1.5306 1.4925 13 1 6.2360 0.5991 0.4487 14 6 4.2633 1.3328 -2.3200 15 8 4.2210 2.5444 -2.2264 16 6 4.6290 0.7036 -3.6056 17 6 5.3174 -0.5115 -3.6212 18 6 5.6562 -1.0931 -4.8250 19 6 5.3106 -0.4780 -6.0157 20 6 4.6337 0.7286 -6.0075 21 6 4.2672 1.3938 -7.3092 22 8 5.3236 2.2679 -7.7114 23 6 4.2885 1.3213 -4.8106 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 3.8507 0.5684 0.8427 30 1 3.9784 2.1765 0.0902 31 1 4.8042 -3.3078 0.5616 32 1 5.5838 -0.9946 -2.6928 33 1 6.1881 -2.0328 -4.8385 34 1 5.5745 -0.9400 -6.9556 35 1 3.3502 1.9682 -7.1780 36 1 4.1132 0.6335 -8.0750 37 1 5.1554 2.7313 -8.5433 38 1 3.7566 2.2612 -4.8057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642106493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = -80.315142 kcal Electronic energy + Delta-G solvation = -22239.679121 eV Core-core repulsion = 18855.433480 eV Total energy + Delta-G solvation = -3384.245641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.59620 -38.18082 -37.02972 -36.24537 -34.91995 -32.04620 -31.47750 -30.57737 -29.12789 -25.96668 -25.52580 -25.01759 -23.33792 -21.75539 -21.09138 -19.01848 -17.54650 -17.36619 -16.43448 -15.91660 -15.60716 -15.48234 -15.09004 -14.73033 -14.56178 -14.27872 -13.77421 -13.54994 -13.20558 -13.14362 -12.69274 -12.51368 -12.12272 -11.91842 -11.68901 -11.56821 -11.39025 -11.03298 -10.88125 -10.77050 -10.49659 -10.03112 -9.99658 -9.93727 -9.22193 -9.08804 -8.62838 -8.33176 -8.17214 -7.77649 -6.43936 -4.03199 1.64601 1.91988 3.06244 3.21600 3.28633 3.65114 4.12409 4.23499 4.35595 4.44906 4.72838 5.01095 5.16863 5.22407 5.46791 5.54475 5.59430 5.62788 5.65617 5.76123 5.82612 5.91777 5.91937 6.04691 6.13236 6.17306 6.24712 6.41573 6.52908 6.59660 6.98527 7.12098 7.22807 7.31014 7.56256 7.67156 7.78694 8.06674 8.25710 8.93447 9.30970 9.62544 10.64708 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.006185 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.765533 B = 4526.199291 C = 5146.984856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.055 3.945 4 C 0.099 3.901 5 N -0.447 5.447 6 C -0.332 4.332 7 H 0.110 0.890 8 C 0.072 3.928 9 N -0.853 5.853 10 Si 0.870 3.130 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.261 1.261 14 C 0.517 3.483 15 O -0.598 6.598 16 C -0.103 4.103 17 C -0.057 4.057 18 C -0.144 4.144 19 C -0.092 4.092 20 C -0.123 4.123 21 C 0.124 3.876 22 O -0.567 6.567 23 C -0.058 4.058 24 H 0.081 0.919 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.275 0.725 32 H 0.168 0.832 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.374 0.626 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 3.871 -7.097 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C -0.022 4.022 4 C -0.024 4.024 5 N -0.166 5.166 6 C -0.459 4.459 7 H 0.127 0.873 8 C -0.136 4.136 9 N -0.487 5.487 10 Si 0.698 3.302 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.185 1.185 14 C 0.308 3.692 15 O -0.485 6.485 16 C -0.106 4.106 17 C -0.075 4.075 18 C -0.162 4.162 19 C -0.110 4.110 20 C -0.123 4.123 21 C 0.047 3.953 22 O -0.372 6.372 23 C -0.077 4.077 24 H 0.099 0.901 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.220 0.780 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.473 3.860 -6.339 7.823 hybrid contribution -0.181 0.552 0.314 0.660 sum -2.654 4.411 -6.026 7.926 Atomic orbital electron populations 1.22657 0.83022 1.02115 0.98707 1.88223 1.17681 1.26509 1.94999 1.22858 0.94829 0.85293 0.99268 1.21770 0.92297 0.99171 0.89139 1.43489 1.56836 1.07134 1.09109 1.19076 1.41644 0.79211 1.05987 0.87285 1.25255 0.96091 0.95136 0.97089 1.69713 1.40656 1.07247 1.31124 0.87017 0.80525 0.80547 0.82126 1.19993 1.21345 1.18468 1.18273 0.79972 0.85964 0.84968 1.90624 1.58351 1.14090 1.85413 1.19863 1.01413 0.96193 0.93126 1.22517 0.92253 0.92685 1.00049 1.21160 1.02027 1.00695 0.92322 1.21043 0.97110 0.94838 0.98024 1.19312 1.03309 0.96230 0.93493 1.20924 0.89241 0.91798 0.93352 1.86624 1.44547 1.61656 1.44416 1.20985 0.97726 0.98288 0.90728 0.90062 0.95199 0.94927 0.93823 0.93423 0.90707 0.89513 0.91505 0.81458 0.86013 0.86787 0.93087 0.93149 0.78023 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.62 10.18 -35.23 -0.36 -7.98 16 3 C 0.06 1.10 6.28 37.16 0.23 1.33 16 4 C 0.10 2.21 4.63 -4.04 -0.02 2.19 16 5 N -0.45 -10.86 2.11 -115.92 -0.24 -11.11 16 6 C -0.33 -8.46 6.08 -15.01 -0.09 -8.55 16 7 H 0.11 2.95 6.38 -52.49 -0.33 2.62 16 8 C 0.07 1.86 5.32 -17.45 -0.09 1.77 16 9 N -0.85 -22.95 13.95 55.50 0.77 -22.17 16 10 Si 0.87 20.20 24.92 -169.99 -4.24 15.96 16 11 H -0.27 -6.17 6.73 56.52 0.38 -5.79 16 12 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.52 12.60 7.41 -12.38 -0.09 12.51 16 15 O -0.60 -15.43 16.32 5.28 0.09 -15.35 16 16 C -0.10 -2.27 5.52 -104.97 -0.58 -2.85 16 17 C -0.06 -1.19 7.75 -39.17 -0.30 -1.49 16 18 C -0.14 -2.55 10.03 -39.64 -0.40 -2.95 16 19 C -0.09 -1.49 9.69 -39.48 -0.38 -1.88 16 20 C -0.12 -2.10 5.50 -104.68 -0.58 -2.67 16 21 C 0.12 1.63 7.17 36.01 0.26 1.89 16 22 O -0.57 -7.57 13.64 -35.23 -0.48 -8.05 16 23 C -0.06 -1.14 9.25 -39.17 -0.36 -1.50 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.71 3.39 -51.93 -0.18 1.53 16 30 H 0.09 1.85 7.37 -51.93 -0.38 1.47 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.17 3.79 5.39 -52.49 -0.28 3.50 16 33 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 37 H 0.37 2.84 9.12 45.56 0.42 3.26 16 38 H 0.12 2.33 7.96 -52.49 -0.42 1.92 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -31.66 318.62 -5.08 -36.74 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.13 Total: 7.72 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -1.29 Total: -0.57 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.53 Total: -33.28 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.75 Total: -31.37 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.24 Total: 15.96 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.66 -5.08 -36.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642106493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.571 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds