Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42891 * 113.99897 * 2 1 4 4 C 1.53005 * 109.47025 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47232 * 65.00032 * 4 3 2 6 6 C 1.36869 * 119.99865 * 269.99963 * 5 4 3 7 7 H 1.08001 * 119.99974 * 139.28056 * 6 5 4 8 8 C 1.39041 * 120.00274 * 319.28539 * 6 5 4 9 9 N 1.31365 * 120.00331 * 161.55508 * 8 6 5 10 10 Si 1.86799 * 119.99942 * 341.55232 * 8 6 5 11 11 H 1.48500 * 109.47249 * 95.26433 * 10 8 6 12 12 H 1.48498 * 109.47464 * 215.26356 * 10 8 6 13 13 H 1.48500 * 109.47069 * 335.26395 * 10 8 6 14 14 C 1.34773 * 120.00332 * 89.99673 * 5 4 3 15 15 O 1.21597 * 119.99903 * 3.71156 * 14 5 4 16 16 C 1.47728 * 120.00343 * 183.70707 * 14 5 4 17 17 C 1.39660 * 120.14848 * 327.81923 * 16 14 5 18 18 C 1.37919 * 119.84751 * 180.02562 * 17 16 14 19 19 C 1.38403 * 120.14503 * 359.73323 * 18 17 16 20 20 C 1.38354 * 120.30570 * 0.54633 * 19 18 17 21 21 C 1.50708 * 119.92028 * 179.72535 * 20 19 18 22 22 O 1.42894 * 109.47200 * 269.72558 * 21 20 19 23 23 C 1.37953 * 120.15244 * 359.44725 * 20 19 18 24 24 H 1.09004 * 109.47284 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47616 * 300.00049 * 1 2 3 26 26 H 1.09000 * 109.47660 * 60.00531 * 1 2 3 27 27 H 1.08998 * 109.47120 * 60.00017 * 3 2 1 28 28 H 1.09003 * 109.47292 * 299.99813 * 3 2 1 29 29 H 1.09003 * 109.47097 * 304.99905 * 4 3 2 30 30 H 1.09003 * 109.47027 * 185.00068 * 4 3 2 31 31 H 0.97003 * 120.00363 * 180.02562 * 9 8 6 32 32 H 1.07995 * 120.08291 * 0.02562 * 17 16 14 33 33 H 1.07995 * 119.92759 * 180.02562 * 18 17 16 34 34 H 1.08003 * 119.84436 * 180.27124 * 19 18 17 35 35 H 1.09005 * 109.46680 * 149.72355 * 21 20 19 36 36 H 1.09001 * 109.47141 * 29.72916 * 21 20 19 37 37 H 0.96693 * 114.00456 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.07356 * 180.25220 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0977 -0.7969 -1.3343 7 1 3.7757 -1.3140 -2.2262 8 6 4.6353 -1.5136 -0.2710 9 7 4.4295 -2.8079 -0.1804 10 14 5.6502 -0.6361 1.0287 11 1 4.7805 -0.2790 2.1782 12 1 6.7409 -1.5306 1.4925 13 1 6.2360 0.5991 0.4487 14 6 4.2633 1.3328 -2.3200 15 8 4.2210 2.5444 -2.2264 16 6 4.6290 0.7036 -3.6056 17 6 5.3174 -0.5115 -3.6212 18 6 5.6562 -1.0931 -4.8250 19 6 5.3106 -0.4780 -6.0157 20 6 4.6337 0.7286 -6.0075 21 6 4.2672 1.3938 -7.3092 22 8 5.3236 2.2679 -7.7114 23 6 4.2885 1.3213 -4.8106 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.6885 1.8463 0.8900 28 1 1.6885 1.8463 -0.8900 29 1 3.8507 0.5684 0.8427 30 1 3.9784 2.1765 0.0902 31 1 4.8042 -3.3078 0.5616 32 1 5.5838 -0.9946 -2.6928 33 1 6.1881 -2.0328 -4.8385 34 1 5.5745 -0.9400 -6.9556 35 1 3.3502 1.9682 -7.1780 36 1 4.1132 0.6335 -8.0750 37 1 5.1554 2.7313 -8.5433 38 1 3.7566 2.2612 -4.8057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642106493.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = -104.040434 kcal Electronic energy + Delta-G solvation = -22240.707927 eV Core-core repulsion = 18855.433480 eV Total energy + Delta-G solvation = -3385.274446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.30235 -39.67344 -38.57343 -37.37450 -36.80671 -33.99203 -32.92614 -32.05590 -30.72762 -27.36692 -26.95734 -26.71487 -24.94373 -23.35978 -22.52402 -20.83584 -19.31727 -18.34224 -18.12808 -17.60892 -17.11954 -17.03481 -16.50254 -16.37430 -16.18508 -15.77153 -15.39319 -15.10048 -14.63331 -14.51090 -14.35159 -14.27698 -13.65289 -13.50768 -13.21443 -13.14142 -12.91154 -12.69324 -12.46319 -12.33073 -12.00981 -11.80317 -11.66243 -11.13236 -10.92659 -10.63841 -10.45509 -9.86560 -9.69666 -9.62082 -8.42976 -6.03370 0.12571 0.47067 1.19581 1.31550 1.40882 1.92374 2.20666 2.49202 2.81580 2.92121 3.16503 3.65029 3.91498 4.03545 4.06222 4.11658 4.18564 4.30070 4.34096 4.40669 4.48149 4.52744 4.56450 4.58034 4.66401 4.72721 4.77481 4.82877 5.06446 5.14922 5.42458 5.58525 5.63257 5.68302 6.06186 6.11608 6.25380 6.36626 6.96828 6.98790 7.36438 7.70325 8.69008 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.006185 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.765533 B = 4526.199291 C = 5146.984856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.061 3.939 4 C 0.089 3.911 5 N -0.455 5.455 6 C -0.318 4.318 7 H 0.085 0.915 8 C 0.040 3.960 9 N -0.888 5.888 10 Si 0.916 3.084 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.510 3.490 15 O -0.621 6.621 16 C -0.136 4.136 17 C -0.076 4.076 18 C -0.142 4.142 19 C -0.079 4.079 20 C -0.122 4.122 21 C 0.126 3.874 22 O -0.589 6.589 23 C -0.070 4.070 24 H 0.087 0.913 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.278 0.722 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.156 0.844 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.399 0.601 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 4.185 -8.646 10.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C -0.016 4.016 4 C -0.033 4.033 5 N -0.173 5.173 6 C -0.446 4.446 7 H 0.103 0.897 8 C -0.165 4.165 9 N -0.525 5.525 10 Si 0.742 3.258 11 H -0.187 1.187 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.302 3.698 15 O -0.509 6.509 16 C -0.139 4.139 17 C -0.094 4.094 18 C -0.160 4.160 19 C -0.097 4.097 20 C -0.122 4.122 21 C 0.049 3.951 22 O -0.399 6.399 23 C -0.089 4.089 24 H 0.106 0.894 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.174 0.826 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.249 0.751 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.702 4.184 -7.896 9.336 hybrid contribution -0.141 0.489 0.636 0.814 sum -2.843 4.673 -7.261 9.091 Atomic orbital electron populations 1.22863 0.80461 1.03173 1.00412 1.88151 1.20633 1.27389 1.95337 1.22783 0.92984 0.85207 1.00632 1.21930 0.94451 0.98971 0.87982 1.43584 1.57100 1.06726 1.09912 1.18790 1.41006 0.79633 1.05126 0.89715 1.25653 0.96728 0.95498 0.98575 1.69765 1.42193 1.08254 1.32247 0.86297 0.79583 0.79215 0.80701 1.18662 1.20792 1.19554 1.18760 0.79285 0.85849 0.85880 1.90577 1.59432 1.14901 1.85991 1.19877 1.03692 0.97406 0.92919 1.22273 0.93788 0.92824 1.00525 1.21438 1.01520 1.01328 0.91721 1.21504 0.95087 0.94150 0.98995 1.19834 1.01628 0.96377 0.94341 1.20957 0.89334 0.92804 0.92012 1.86540 1.44785 1.62115 1.46444 1.21095 0.98308 0.98358 0.91155 0.89436 0.92473 0.94115 0.90173 0.94107 0.91318 0.89057 0.91194 0.84088 0.83632 0.82592 0.92017 0.89775 0.75055 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -16.85 10.18 -148.98 -1.52 -18.36 16 3 C 0.06 2.41 6.28 71.98 0.45 2.86 16 4 C 0.09 4.00 4.63 86.38 0.40 4.40 16 5 N -0.45 -22.73 2.11 -638.93 -1.35 -24.07 16 6 C -0.32 -16.77 6.08 84.10 0.51 -16.26 16 7 H 0.09 4.83 6.38 -2.91 -0.02 4.81 16 8 C 0.04 2.12 5.32 84.96 0.45 2.58 16 9 N -0.89 -48.88 13.95 21.68 0.30 -48.57 16 10 Si 0.92 42.18 24.92 68.60 1.71 43.89 16 11 H -0.26 -11.39 6.73 99.48 0.67 -10.72 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.51 25.70 7.41 86.75 0.64 26.34 16 15 O -0.62 -32.90 16.32 -4.02 -0.07 -32.96 16 16 C -0.14 -6.17 5.52 -20.09 -0.11 -6.29 16 17 C -0.08 -3.23 7.75 22.54 0.17 -3.06 16 18 C -0.14 -4.86 10.03 22.23 0.22 -4.64 16 19 C -0.08 -2.34 9.69 22.34 0.22 -2.12 16 20 C -0.12 -3.86 5.50 -19.90 -0.11 -3.97 16 21 C 0.13 2.84 7.17 71.24 0.51 3.35 16 22 O -0.59 -13.72 13.64 -148.98 -2.03 -15.75 16 23 C -0.07 -2.75 9.25 22.54 0.21 -2.54 16 24 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 3.14 3.39 -2.39 -0.01 3.13 16 30 H 0.09 3.93 7.37 -2.39 -0.02 3.91 16 31 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.14 6.72 5.39 -2.91 -0.02 6.71 16 33 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.06 1.26 8.08 -2.38 -0.02 1.24 16 36 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.40 4.61 9.12 -74.06 -0.68 3.93 16 38 H 0.12 4.57 7.96 -2.91 -0.02 4.55 16 Total: -1.00 -70.17 318.62 2.24 -67.93 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.37 Total: 25.15 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 4.82 Total: 2.75 kcal Atomic # 7 Polarization: -71.60 SS G_CDS: -1.04 Total: -72.65 kcal Atomic # 8 Polarization: -63.46 SS G_CDS: -3.61 Total: -67.07 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.71 Total: 43.89 kcal Total: -70.17 2.24 -67.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642106493.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.113 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds