Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00179 * 2 1 4 4 O 1.20832 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00418 * 179.97438 * 3 2 1 6 6 O 1.42901 * 109.47804 * 180.02562 * 5 3 2 7 7 C 1.35895 * 117.00261 * 180.02562 * 6 5 3 8 8 C 1.38736 * 120.05123 * 179.97438 * 7 6 5 9 9 C 1.38150 * 119.94112 * 180.02562 * 8 7 6 10 10 C 1.38260 * 120.05550 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.94603 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.46943 * 90.00050 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00103 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46586 * 90.00817 * 18 16 14 20 20 H 1.48496 * 109.47489 * 210.00373 * 18 16 14 21 21 H 1.48495 * 109.47395 * 330.00672 * 18 16 14 22 22 C 1.38269 * 120.11470 * 0.25554 * 10 9 8 23 23 C 1.38152 * 120.05179 * 359.44756 * 22 10 9 24 24 H 1.08998 * 109.47176 * 59.99755 * 1 2 3 25 25 H 1.09003 * 109.47184 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46758 * 299.99517 * 1 2 3 27 27 H 1.09002 * 109.47079 * 60.00386 * 5 3 2 28 28 H 1.09005 * 109.47112 * 300.00698 * 5 3 2 29 29 H 1.08001 * 120.03230 * 0.02562 * 8 7 6 30 30 H 1.08000 * 119.97145 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.46763 * 330.00491 * 11 10 9 32 32 H 1.08995 * 109.47483 * 210.00148 * 11 10 9 33 33 H 1.00901 * 111.00067 * 303.95401 * 12 11 10 34 34 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 35 35 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 36 36 H 0.96997 * 120.00392 * 179.97438 * 17 16 14 37 37 H 1.07995 * 119.97476 * 179.70530 * 22 10 9 38 38 H 1.08002 * 120.02819 * 180.25313 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9716 2.6452 0.0011 7 6 5.3076 2.8935 0.0011 8 6 5.7713 4.2011 0.0010 9 6 7.1300 4.4509 0.0005 10 6 8.0275 3.3991 -0.0005 11 6 9.5091 3.6744 -0.0016 12 7 9.9916 3.7635 1.3830 13 6 11.4353 4.0324 1.4211 14 6 11.8930 4.1162 2.8544 15 1 11.1826 3.9827 3.6569 16 6 13.2190 4.3624 3.1415 17 7 14.0841 4.5245 2.1644 18 14 13.7861 4.4670 4.9182 19 1 14.1923 3.1181 5.3883 20 1 14.9424 5.3937 5.0150 21 1 12.6748 4.9720 5.7637 22 6 7.5679 2.0950 -0.0063 23 6 6.2102 1.8399 0.0004 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9564 0.7807 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 5.0707 5.0230 0.0014 30 1 7.4915 5.4686 0.0009 31 1 9.7032 4.6160 -0.5153 32 1 10.0285 2.8660 -0.5160 33 1 9.4801 4.4630 1.8999 34 1 11.9683 3.2267 0.9163 35 1 11.6425 4.9765 0.9174 36 1 15.0169 4.6980 2.3663 37 1 8.2709 1.2752 -0.0118 38 1 5.8516 0.8212 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425987007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -94.241912 kcal Electronic energy + Delta-G solvation = -20154.094622 eV Core-core repulsion = 16769.245072 eV Total energy + Delta-G solvation = -3384.849551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.03884 -40.05047 -37.95090 -36.79021 -35.06431 -32.57641 -31.22861 -30.58680 -29.65538 -27.51301 -26.61539 -24.07462 -23.02353 -21.66895 -21.41327 -20.71159 -18.72489 -17.66818 -17.32741 -17.25341 -16.55780 -15.81205 -15.65853 -15.26126 -14.66442 -14.51080 -14.07259 -13.84046 -13.70404 -13.46587 -13.31279 -13.07491 -12.52126 -12.50783 -12.39023 -11.62655 -11.39019 -11.29205 -11.27471 -11.05367 -10.93008 -10.70989 -10.65851 -10.60212 -9.93357 -9.21022 -8.93788 -8.48846 -8.10359 -7.30473 -6.03812 -4.05765 1.39751 1.47820 1.70131 1.73757 3.27251 3.32398 3.38046 3.42161 3.81452 4.20226 4.43562 4.53189 4.56499 4.64987 4.74134 4.86154 4.88783 5.06439 5.11842 5.32089 5.35756 5.48485 5.57372 5.67065 5.82786 5.90853 6.16772 6.18034 6.30537 6.41965 6.73705 6.84499 7.20458 7.23004 7.29686 7.40158 7.77494 8.11165 8.37306 8.58987 9.03481 9.59156 11.07223 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.036099 B = 0.002420 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.465300 B =11567.195220 C =11863.965566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.483 6.483 5 C 0.070 3.930 6 O -0.299 6.299 7 C 0.113 3.887 8 C -0.144 4.144 9 C -0.076 4.076 10 C -0.097 4.097 11 C 0.096 3.904 12 N -0.684 5.684 13 C 0.193 3.807 14 C -0.514 4.514 15 H 0.062 0.938 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.059 4.059 23 C -0.209 4.209 24 H 0.065 0.935 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.330 0.670 34 H 0.028 0.972 35 H -0.013 1.013 36 H 0.261 0.739 37 H 0.129 0.871 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.753 -8.622 -7.179 26.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.369 6.369 5 C -0.007 4.007 6 O -0.213 6.213 7 C 0.069 3.931 8 C -0.163 4.163 9 C -0.095 4.095 10 C -0.097 4.097 11 C -0.033 4.033 12 N -0.315 5.315 13 C 0.066 3.934 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 C -0.078 4.078 23 C -0.227 4.227 24 H 0.084 0.916 25 H 0.124 0.876 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.047 0.953 35 H 0.005 0.995 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.860 -8.824 -7.148 26.424 hybrid contribution 0.343 0.799 0.671 1.098 sum -23.517 -8.025 -6.477 25.679 Atomic orbital electron populations 1.23341 0.75290 1.04067 1.02919 1.86447 1.24092 1.32419 1.84396 1.23062 0.91108 0.81900 0.73488 1.90730 1.66693 1.36186 1.43263 1.21814 0.88585 0.84655 1.05609 1.86040 1.21519 1.24060 1.89667 1.18882 0.80705 0.94469 0.99020 1.20340 0.95722 0.93888 1.06322 1.20930 0.91582 0.99342 0.97635 1.20015 0.96234 0.92970 1.00517 1.20845 0.89471 1.00048 0.92961 1.60751 1.07560 1.53871 1.09316 1.19587 0.81542 0.94868 0.97367 1.21182 0.93715 1.48207 0.92157 0.91937 1.24996 0.96698 0.95380 0.97560 1.69958 1.03143 1.49255 1.31389 0.86468 0.78184 0.77883 0.84681 1.20611 1.21311 1.19842 1.20871 0.94205 0.96821 0.95908 1.21190 0.94153 0.97869 1.09511 0.91613 0.87612 0.91571 0.87554 0.87447 0.85311 0.85337 0.95367 0.90911 0.85363 0.95349 0.99501 0.92903 0.85340 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.85 10.57 -39.25 -0.41 -3.26 16 3 C 0.46 4.61 8.03 36.00 0.29 4.90 16 4 O -0.48 -6.52 16.25 -25.48 -0.41 -6.93 16 5 C 0.07 0.59 5.33 36.00 0.19 0.79 16 6 O -0.30 -3.68 9.67 -39.36 -0.38 -4.06 16 7 C 0.11 1.44 6.69 -39.22 -0.26 1.18 16 8 C -0.14 -1.88 9.99 -39.43 -0.39 -2.27 16 9 C -0.08 -1.04 9.69 -39.61 -0.38 -1.42 16 10 C -0.10 -1.45 5.39 -104.60 -0.56 -2.01 16 11 C 0.10 1.68 5.81 -4.98 -0.03 1.65 16 12 N -0.68 -14.62 6.48 -116.34 -0.75 -15.37 16 13 C 0.19 5.03 5.44 -4.97 -0.03 5.01 16 14 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 15 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 18 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.06 -0.80 9.69 -39.60 -0.38 -1.19 16 23 C -0.21 -2.44 9.04 -39.43 -0.36 -2.80 16 24 H 0.07 0.35 8.13 -51.93 -0.42 -0.07 16 25 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.37 8.13 -51.93 -0.42 -0.06 16 27 H 0.11 0.65 7.66 -51.93 -0.40 0.25 16 28 H 0.11 0.70 7.66 -51.93 -0.40 0.30 16 29 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 33 H 0.33 6.83 8.71 -39.29 -0.34 6.49 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H -0.01 -0.35 8.14 -51.93 -0.42 -0.77 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -33.55 335.04 -7.70 -41.26 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.23 Total: 1.02 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.27 Total: -8.34 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.02 Total: -41.43 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.21 Total: -14.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.55 -7.70 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425987007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.986 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds