Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 117.00179 * 2 1 4 4 O 1.20832 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00418 * 179.97438 * 3 2 1 6 6 O 1.42901 * 109.47804 * 180.02562 * 5 3 2 7 7 C 1.35895 * 117.00261 * 180.02562 * 6 5 3 8 8 C 1.38736 * 120.05123 * 179.97438 * 7 6 5 9 9 C 1.38150 * 119.94112 * 180.02562 * 8 7 6 10 10 C 1.38260 * 120.05550 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.94603 * 179.97438 * 10 9 8 12 12 N 1.46901 * 109.46943 * 90.00050 * 11 10 9 13 13 C 1.46905 * 110.99870 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47066 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00103 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99826 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00043 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46586 * 90.00817 * 18 16 14 20 20 H 1.48496 * 109.47489 * 210.00373 * 18 16 14 21 21 H 1.48495 * 109.47395 * 330.00672 * 18 16 14 22 22 C 1.38269 * 120.11470 * 0.25554 * 10 9 8 23 23 C 1.38152 * 120.05179 * 359.44756 * 22 10 9 24 24 H 1.08998 * 109.47176 * 59.99755 * 1 2 3 25 25 H 1.09003 * 109.47184 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46758 * 299.99517 * 1 2 3 27 27 H 1.09002 * 109.47079 * 60.00386 * 5 3 2 28 28 H 1.09005 * 109.47112 * 300.00698 * 5 3 2 29 29 H 1.08001 * 120.03230 * 0.02562 * 8 7 6 30 30 H 1.08000 * 119.97145 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.46763 * 330.00491 * 11 10 9 32 32 H 1.08995 * 109.47483 * 210.00148 * 11 10 9 33 33 H 1.00901 * 111.00067 * 303.95401 * 12 11 10 34 34 H 1.09001 * 109.46798 * 300.00327 * 13 12 11 35 35 H 1.08998 * 109.46961 * 60.00043 * 13 12 11 36 36 H 0.96997 * 120.00392 * 179.97438 * 17 16 14 37 37 H 1.07995 * 119.97476 * 179.70530 * 22 10 9 38 38 H 1.08002 * 120.02819 * 180.25313 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9716 2.6452 0.0011 7 6 5.3076 2.8935 0.0011 8 6 5.7713 4.2011 0.0010 9 6 7.1300 4.4509 0.0005 10 6 8.0275 3.3991 -0.0005 11 6 9.5091 3.6744 -0.0016 12 7 9.9916 3.7635 1.3830 13 6 11.4353 4.0324 1.4211 14 6 11.8930 4.1162 2.8544 15 1 11.1826 3.9827 3.6569 16 6 13.2190 4.3624 3.1415 17 7 14.0841 4.5245 2.1644 18 14 13.7861 4.4670 4.9182 19 1 14.1923 3.1181 5.3883 20 1 14.9424 5.3937 5.0150 21 1 12.6748 4.9720 5.7637 22 6 7.5679 2.0950 -0.0063 23 6 6.2102 1.8399 0.0004 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.9564 0.7807 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 5.0707 5.0230 0.0014 30 1 7.4915 5.4686 0.0009 31 1 9.7032 4.6160 -0.5153 32 1 10.0285 2.8660 -0.5160 33 1 9.4801 4.4630 1.8999 34 1 11.9683 3.2267 0.9163 35 1 11.6425 4.9765 0.9174 36 1 15.0169 4.6980 2.3663 37 1 8.2709 1.2752 -0.0118 38 1 5.8516 0.8212 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425987007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = -116.061574 kcal Electronic energy + Delta-G solvation = -20155.040794 eV Core-core repulsion = 16769.245072 eV Total energy + Delta-G solvation = -3385.795722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.80862 -40.95096 -38.96408 -37.57647 -36.72609 -34.56702 -32.23993 -31.75195 -30.58210 -28.63092 -27.85099 -25.60979 -23.96333 -23.43564 -22.47218 -21.73305 -19.54819 -18.65048 -18.45173 -18.02293 -17.98298 -16.96482 -16.57401 -16.52298 -16.28038 -15.87092 -15.22385 -15.01086 -14.77082 -14.51316 -14.42243 -14.27278 -13.84223 -13.49209 -13.38109 -13.06056 -12.94995 -12.81395 -12.59674 -12.29344 -12.06494 -11.92820 -11.89274 -11.83817 -11.54909 -11.29110 -10.65333 -9.92745 -9.24011 -9.00803 -8.21585 -6.32747 0.39812 0.44257 0.96767 1.07176 1.42473 1.44072 1.55425 2.40929 2.52004 2.77363 3.11520 3.55421 3.75359 3.86539 3.94892 4.01494 4.03264 4.09012 4.27727 4.31162 4.34755 4.46128 4.58412 4.70121 4.75595 4.80784 5.08777 5.13678 5.19092 5.25040 5.28751 5.39385 5.61622 5.74321 5.76517 6.02579 6.31149 6.44749 6.56724 6.71287 6.89020 7.38013 8.89670 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.036099 B = 0.002420 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.465300 B =11567.195220 C =11863.965566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.467 3.533 4 O -0.528 6.528 5 C 0.062 3.938 6 O -0.318 6.318 7 C 0.117 3.883 8 C -0.155 4.155 9 C -0.079 4.079 10 C -0.117 4.117 11 C 0.101 3.899 12 N -0.682 5.682 13 C 0.207 3.793 14 C -0.535 4.535 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.974 3.026 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.264 1.264 22 C -0.066 4.066 23 C -0.199 4.199 24 H 0.063 0.937 25 H 0.138 0.862 26 H 0.062 0.938 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.334 0.666 34 H 0.003 0.997 35 H -0.037 1.037 36 H 0.265 0.735 37 H 0.134 0.866 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.996 -10.080 -6.365 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.310 3.690 4 O -0.417 6.417 5 C -0.013 4.013 6 O -0.232 6.232 7 C 0.072 3.928 8 C -0.173 4.173 9 C -0.097 4.097 10 C -0.118 4.118 11 C -0.028 4.028 12 N -0.313 5.313 13 C 0.079 3.921 14 C -0.574 4.574 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.798 3.202 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.189 1.189 22 C -0.085 4.085 23 C -0.218 4.218 24 H 0.082 0.918 25 H 0.156 0.844 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.151 0.849 34 H 0.021 0.979 35 H -0.020 1.020 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.132 -10.312 -6.344 27.896 hybrid contribution 0.578 1.173 0.347 1.353 sum -24.553 -9.138 -5.997 26.876 Atomic orbital electron populations 1.23639 0.73900 1.06159 1.02709 1.86451 1.25467 1.31256 1.83737 1.23403 0.91699 0.81743 0.72142 1.90717 1.67722 1.37633 1.45616 1.22195 0.87707 0.83188 1.08258 1.86013 1.21101 1.26632 1.89499 1.18980 0.81188 0.94554 0.98041 1.20498 0.95536 0.94848 1.06440 1.20977 0.91830 0.99391 0.97536 1.19804 0.94435 0.94269 1.03247 1.20808 0.91548 0.99909 0.90565 1.60629 1.04964 1.53655 1.12029 1.19240 0.84268 0.92562 0.96014 1.21538 0.94266 1.48483 0.93084 0.91843 1.25955 0.96766 0.94683 1.02370 1.70083 1.03587 1.49840 1.33817 0.85321 0.77841 0.78174 0.78881 1.19795 1.20703 1.18850 1.21021 0.95375 0.96276 0.95789 1.21463 0.92981 0.99441 1.07877 0.91802 0.84361 0.91919 0.84506 0.84855 0.84475 0.84812 0.95460 0.91199 0.84923 0.97886 1.01968 0.92603 0.84767 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.46 16 2 O -0.35 -4.87 10.57 -51.39 -0.54 -5.41 16 3 C 0.47 8.49 8.03 71.23 0.57 9.06 16 4 O -0.53 -13.97 16.25 28.38 0.46 -13.51 16 5 C 0.06 0.87 5.33 71.23 0.38 1.25 16 6 O -0.32 -7.17 9.67 -73.29 -0.71 -7.88 16 7 C 0.12 2.72 6.69 22.51 0.15 2.87 16 8 C -0.15 -3.85 9.99 22.37 0.22 -3.63 16 9 C -0.08 -2.10 9.69 22.25 0.22 -1.89 16 10 C -0.12 -3.43 5.39 -19.85 -0.11 -3.54 16 11 C 0.10 3.56 5.81 85.56 0.50 4.06 16 12 N -0.68 -29.58 6.48 -521.98 -3.38 -32.96 16 13 C 0.21 11.13 5.44 85.55 0.47 11.59 16 14 C -0.54 -30.73 9.32 25.60 0.24 -30.49 16 15 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 18 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 C -0.07 -1.67 9.69 22.26 0.22 -1.46 16 23 C -0.20 -4.09 9.04 22.37 0.20 -3.88 16 24 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 25 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 27 H 0.14 1.11 7.66 -2.39 -0.02 1.09 16 28 H 0.13 1.21 7.66 -2.38 -0.02 1.19 16 29 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 30 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.03 0.96 8.08 -2.39 -0.02 0.95 16 32 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 33 H 0.33 13.96 8.71 -89.69 -0.78 13.18 16 34 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 35 H -0.04 -2.15 8.14 -2.39 -0.02 -2.17 16 36 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 37 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 38 H 0.16 2.04 6.30 -2.91 -0.02 2.02 16 Total: -1.00 -73.03 335.04 3.14 -69.89 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.28 Total: 13.69 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.71 Total: -14.12 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.10 Total: -89.09 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.79 Total: -26.80 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -73.03 3.14 -69.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425987007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.170 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds