Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99934 * 2 1 4 4 O 1.20826 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99807 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47085 * 180.02562 * 5 3 2 7 7 C 1.35896 * 117.00441 * 179.97438 * 6 5 3 8 8 C 1.38759 * 120.05286 * 0.24917 * 7 6 5 9 9 C 1.38118 * 119.94512 * 180.31943 * 8 7 6 10 10 C 1.38296 * 120.05619 * 359.68306 * 9 8 7 11 11 C 1.38243 * 120.10905 * 0.02562 * 10 9 8 12 12 C 1.38170 * 120.05451 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.02671 * 179.97438 * 12 11 10 14 14 N 1.46906 * 109.47109 * 260.00473 * 13 12 11 15 15 C 1.46895 * 110.99789 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47030 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99961 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00406 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99531 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46982 * 89.99682 * 20 18 16 22 22 H 1.48500 * 109.47073 * 209.99880 * 20 18 16 23 23 H 1.48503 * 109.47042 * 330.00026 * 20 18 16 24 24 H 1.08995 * 109.47510 * 300.00080 * 1 2 3 25 25 H 1.09004 * 109.47156 * 59.99952 * 1 2 3 26 26 H 1.08996 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47126 * 60.00458 * 5 3 2 28 28 H 1.08999 * 109.46923 * 299.99817 * 5 3 2 29 29 H 1.08005 * 120.03045 * 0.02990 * 8 7 6 30 30 H 1.08001 * 119.97673 * 179.70488 * 9 8 7 31 31 H 1.08000 * 119.94496 * 180.02562 * 10 9 8 32 32 H 1.07995 * 119.97355 * 180.02562 * 11 10 9 33 33 H 1.08992 * 109.46894 * 140.00209 * 13 12 11 34 34 H 1.09004 * 109.47113 * 20.00359 * 13 12 11 35 35 H 1.00899 * 110.99484 * 303.95639 * 14 13 12 36 36 H 1.08996 * 109.47424 * 299.99656 * 15 14 13 37 37 H 1.09002 * 109.47411 * 60.00282 * 15 14 13 38 38 H 0.96996 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6452 0.0011 7 6 5.3076 2.8936 0.0022 8 6 6.2103 1.8398 -0.0024 9 6 7.5677 2.0948 0.0054 10 6 8.0275 3.3991 0.0111 11 6 7.1302 4.4507 0.0097 12 6 5.7712 4.2009 0.0029 13 6 4.7936 5.3477 0.0019 14 7 4.2870 5.5605 1.3643 15 6 3.3295 6.6739 1.4020 16 6 2.8322 6.8613 2.8122 17 1 3.1918 6.2179 3.6016 18 6 1.9181 7.8541 3.0947 19 7 1.4805 8.6379 2.1335 20 14 1.3022 8.0868 4.8428 21 1 2.1872 9.0423 5.5563 22 1 -0.0825 8.6225 4.8126 23 1 1.3124 6.7806 5.5492 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9564 0.7806 -0.8892 28 1 3.9556 0.7809 0.8908 29 1 5.8518 0.8210 -0.0074 30 1 8.2708 1.2750 0.0066 31 1 9.0893 3.5964 0.0168 32 1 7.4916 5.4684 0.0138 33 1 3.9618 5.1154 -0.6629 34 1 5.2944 6.2517 -0.3448 35 1 3.8752 4.7163 1.7329 36 1 3.8204 7.5869 1.0652 37 1 2.4873 6.4512 0.7467 38 1 0.8377 9.3366 2.3323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819012214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -91.097128 kcal Electronic energy + Delta-G solvation = -21278.587225 eV Core-core repulsion = 17893.874042 eV Total energy + Delta-G solvation = -3384.713183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81003 -39.98458 -37.56038 -36.44350 -35.20402 -32.63836 -30.97818 -30.45580 -29.27490 -27.20005 -26.77513 -24.21027 -22.68383 -21.54449 -21.06518 -20.84405 -18.37454 -17.44311 -17.07688 -16.96834 -16.40922 -15.65805 -15.61970 -15.42611 -14.55816 -14.28271 -14.15554 -13.79253 -13.58654 -13.23076 -13.02831 -12.76580 -12.34318 -12.24028 -12.13525 -11.60100 -11.32651 -11.20627 -11.08420 -10.99775 -10.78977 -10.59423 -10.59156 -10.41734 -9.84667 -9.10202 -8.76786 -8.38129 -8.10657 -7.13674 -5.93086 -3.94011 1.41904 1.50160 1.97995 2.01715 3.38535 3.43290 3.46299 3.48106 3.84163 4.44265 4.51977 4.66457 4.74612 4.86907 4.87774 4.91897 5.01939 5.14498 5.32946 5.41952 5.42498 5.42754 5.70926 5.74951 6.02547 6.05137 6.12064 6.36012 6.41298 6.53003 6.71461 6.87514 7.33570 7.37505 7.57885 7.58851 7.88715 8.23786 8.52781 8.73823 9.14934 9.69793 11.18326 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.005487 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.395391 B = 5101.614300 C = 7236.897756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.456 3.544 4 O -0.467 6.467 5 C 0.072 3.928 6 O -0.288 6.288 7 C 0.129 3.871 8 C -0.211 4.211 9 C -0.091 4.091 10 C -0.155 4.155 11 C -0.066 4.066 12 C -0.087 4.087 13 C 0.100 3.900 14 N -0.681 5.681 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.061 0.939 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.331 0.669 36 H 0.027 0.973 37 H -0.012 1.012 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -19.795 -7.235 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.296 3.704 4 O -0.351 6.351 5 C -0.005 4.005 6 O -0.201 6.201 7 C 0.083 3.917 8 C -0.230 4.230 9 C -0.109 4.109 10 C -0.173 4.173 11 C -0.085 4.085 12 C -0.088 4.088 13 C -0.029 4.029 14 N -0.312 5.312 15 C 0.067 3.933 16 C -0.548 4.548 17 H 0.079 0.921 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.149 0.851 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.148 0.852 36 H 0.045 0.955 37 H 0.006 0.994 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.195 -18.775 -7.080 21.316 hybrid contribution -1.305 -0.388 0.501 1.451 sum 5.890 -19.163 -6.579 21.100 Atomic orbital electron populations 1.23322 0.75362 1.03773 1.03165 1.86410 1.24044 1.32573 1.84767 1.23004 0.91056 0.82044 0.74295 1.90826 1.66390 1.35913 1.41954 1.21790 0.89006 0.84585 1.05116 1.86158 1.21029 1.23889 1.89034 1.18834 0.81141 0.93904 0.97777 1.21139 0.94183 0.97801 1.09881 1.20830 0.94456 0.96866 0.98748 1.21053 0.99615 0.92604 1.04031 1.20951 0.91274 0.99623 0.96651 1.19474 0.94919 0.91860 1.02566 1.20725 0.95081 0.94059 0.93080 1.60810 1.43097 1.10180 1.17089 1.19556 0.88387 0.88469 0.96858 1.21179 1.23555 1.15958 0.94079 0.92102 1.24980 0.96385 0.95918 0.97338 1.69973 1.32050 1.19951 1.31887 0.86491 0.77858 0.78302 0.84691 1.20642 1.21345 1.19932 0.91415 0.91634 0.87829 0.87897 0.87670 0.85703 0.86082 0.86042 0.85068 0.94829 0.91014 0.85219 0.95490 0.99392 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -3.94 10.57 -39.26 -0.41 -4.36 16 3 C 0.46 6.20 8.03 36.00 0.29 6.48 16 4 O -0.47 -8.65 16.25 -25.48 -0.41 -9.07 16 5 C 0.07 0.80 5.33 36.00 0.19 1.00 16 6 O -0.29 -4.59 8.83 -39.37 -0.35 -4.93 16 7 C 0.13 1.93 6.65 -39.22 -0.26 1.67 16 8 C -0.21 -2.47 9.04 -39.43 -0.36 -2.82 16 9 C -0.09 -0.98 10.04 -39.60 -0.40 -1.38 16 10 C -0.15 -1.81 10.04 -39.56 -0.40 -2.21 16 11 C -0.07 -0.94 9.67 -39.60 -0.38 -1.32 16 12 C -0.09 -1.44 5.41 -104.47 -0.56 -2.01 16 13 C 0.10 1.99 5.47 -4.97 -0.03 1.96 16 14 N -0.68 -16.18 6.48 -116.34 -0.75 -16.93 16 15 C 0.19 5.49 5.44 -4.98 -0.03 5.46 16 16 C -0.51 -15.35 9.32 -34.44 -0.32 -15.67 16 17 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.05 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -28.12 13.29 55.43 0.74 -27.39 16 20 Si 0.90 22.71 29.54 -169.99 -5.02 17.69 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 25 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.82 7.65 -51.93 -0.40 0.42 16 28 H 0.11 0.91 7.67 -51.93 -0.40 0.52 16 29 H 0.13 1.07 6.30 -52.48 -0.33 0.74 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.13 1.71 8.04 -52.49 -0.42 1.29 16 33 H 0.03 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.07 1.37 8.00 -51.93 -0.42 0.96 16 35 H 0.33 7.94 8.63 -39.29 -0.34 7.61 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H -0.01 -0.36 8.14 -51.93 -0.42 -0.78 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -35.99 333.81 -7.68 -43.67 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.21 Total: 2.18 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.28 Total: -5.89 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.02 Total: -44.32 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.18 Total: -18.36 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.99 -7.68 -43.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819012214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.424 kcal (2) G-P(sol) polarization free energy of solvation -35.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds