Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 116.99934 * 2 1 4 4 O 1.20826 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99807 * 179.97438 * 3 2 1 6 6 O 1.42899 * 109.47085 * 180.02562 * 5 3 2 7 7 C 1.35896 * 117.00441 * 179.97438 * 6 5 3 8 8 C 1.38759 * 120.05286 * 0.24917 * 7 6 5 9 9 C 1.38118 * 119.94512 * 180.31943 * 8 7 6 10 10 C 1.38296 * 120.05619 * 359.68306 * 9 8 7 11 11 C 1.38243 * 120.10905 * 0.02562 * 10 9 8 12 12 C 1.38170 * 120.05451 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.02671 * 179.97438 * 12 11 10 14 14 N 1.46906 * 109.47109 * 260.00473 * 13 12 11 15 15 C 1.46895 * 110.99789 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.47030 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99961 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00406 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99531 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46982 * 89.99682 * 20 18 16 22 22 H 1.48500 * 109.47073 * 209.99880 * 20 18 16 23 23 H 1.48503 * 109.47042 * 330.00026 * 20 18 16 24 24 H 1.08995 * 109.47510 * 300.00080 * 1 2 3 25 25 H 1.09004 * 109.47156 * 59.99952 * 1 2 3 26 26 H 1.08996 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47126 * 60.00458 * 5 3 2 28 28 H 1.08999 * 109.46923 * 299.99817 * 5 3 2 29 29 H 1.08005 * 120.03045 * 0.02990 * 8 7 6 30 30 H 1.08001 * 119.97673 * 179.70488 * 9 8 7 31 31 H 1.08000 * 119.94496 * 180.02562 * 10 9 8 32 32 H 1.07995 * 119.97355 * 180.02562 * 11 10 9 33 33 H 1.08992 * 109.46894 * 140.00209 * 13 12 11 34 34 H 1.09004 * 109.47113 * 20.00359 * 13 12 11 35 35 H 1.00899 * 110.99484 * 303.95639 * 14 13 12 36 36 H 1.08996 * 109.47424 * 299.99656 * 15 14 13 37 37 H 1.09002 * 109.47411 * 60.00282 * 15 14 13 38 38 H 0.96996 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6452 0.0011 7 6 5.3076 2.8936 0.0022 8 6 6.2103 1.8398 -0.0024 9 6 7.5677 2.0948 0.0054 10 6 8.0275 3.3991 0.0111 11 6 7.1302 4.4507 0.0097 12 6 5.7712 4.2009 0.0029 13 6 4.7936 5.3477 0.0019 14 7 4.2870 5.5605 1.3643 15 6 3.3295 6.6739 1.4020 16 6 2.8322 6.8613 2.8122 17 1 3.1918 6.2179 3.6016 18 6 1.9181 7.8541 3.0947 19 7 1.4805 8.6379 2.1335 20 14 1.3022 8.0868 4.8428 21 1 2.1872 9.0423 5.5563 22 1 -0.0825 8.6225 4.8126 23 1 1.3124 6.7806 5.5492 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.9564 0.7806 -0.8892 28 1 3.9556 0.7809 0.8908 29 1 5.8518 0.8210 -0.0074 30 1 8.2708 1.2750 0.0066 31 1 9.0893 3.5964 0.0168 32 1 7.4916 5.4684 0.0138 33 1 3.9618 5.1154 -0.6629 34 1 5.2944 6.2517 -0.3448 35 1 3.8752 4.7163 1.7329 36 1 3.8204 7.5869 1.0652 37 1 2.4873 6.4512 0.7467 38 1 0.8377 9.3366 2.3323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819012214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = -116.332005 kcal Electronic energy + Delta-G solvation = -21279.681491 eV Core-core repulsion = 17893.874042 eV Total energy + Delta-G solvation = -3385.807449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.84634 -41.02431 -38.59190 -37.53000 -37.03411 -34.72790 -32.43665 -31.41212 -30.30426 -28.80967 -27.90139 -25.92147 -23.69170 -23.51446 -22.31626 -21.94463 -19.40576 -18.64479 -18.44250 -18.04700 -17.92282 -17.04815 -16.68028 -16.50565 -16.40373 -15.84161 -15.28085 -15.20219 -14.80953 -14.56266 -14.42544 -13.96853 -13.79198 -13.49088 -13.30093 -13.03820 -13.00060 -12.75140 -12.63325 -12.28100 -12.13197 -12.10297 -11.92628 -11.81664 -11.55152 -11.30612 -10.69397 -9.80893 -9.25247 -9.05484 -8.25069 -6.37297 0.41882 0.51763 0.97361 1.08672 1.36844 1.40779 1.51809 2.37722 2.52800 2.83770 3.07290 3.54866 3.69868 3.88168 3.92627 3.99933 4.00731 4.19399 4.26010 4.27094 4.42079 4.44230 4.59210 4.65657 4.68983 4.85534 5.02668 5.10058 5.17599 5.21565 5.38847 5.54837 5.56838 5.67712 5.89307 5.97046 6.32548 6.41502 6.58645 6.63335 6.82328 7.33041 8.87173 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.010646 B = 0.005487 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.395391 B = 5101.614300 C = 7236.897756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.458 3.542 4 O -0.532 6.532 5 C 0.067 3.933 6 O -0.329 6.329 7 C 0.115 3.885 8 C -0.203 4.203 9 C -0.078 4.078 10 C -0.153 4.153 11 C -0.077 4.077 12 C -0.125 4.125 13 C 0.107 3.893 14 N -0.674 5.674 15 C 0.210 3.790 16 C -0.536 4.536 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.979 3.021 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.138 0.862 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.009 0.991 34 H 0.069 0.931 35 H 0.329 0.671 36 H 0.004 0.996 37 H -0.050 1.050 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 -22.768 -6.132 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.302 3.698 4 O -0.420 6.420 5 C -0.008 4.008 6 O -0.243 6.243 7 C 0.070 3.930 8 C -0.222 4.222 9 C -0.096 4.096 10 C -0.171 4.171 11 C -0.096 4.096 12 C -0.126 4.126 13 C -0.022 4.022 14 N -0.303 5.303 15 C 0.082 3.918 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.802 3.198 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.189 1.189 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.163 0.837 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.028 0.972 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.022 0.978 37 H -0.033 1.033 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.087 -21.795 -5.991 24.361 hybrid contribution -1.851 0.419 0.068 1.899 sum 7.236 -21.375 -5.923 23.331 Atomic orbital electron populations 1.23617 0.74215 1.06189 1.02376 1.86424 1.25176 1.31001 1.83916 1.23667 0.92180 0.81727 0.72275 1.90809 1.67890 1.38028 1.45271 1.22209 0.87171 0.83095 1.08375 1.86099 1.21943 1.26858 1.89401 1.18991 0.81413 0.94182 0.98418 1.21546 0.94042 0.98479 1.08104 1.21375 0.94778 0.97591 0.95839 1.21409 1.00615 0.92359 1.02673 1.21068 0.90683 1.00804 0.97010 1.19263 0.95061 0.91385 1.06914 1.20626 0.95220 0.96078 0.90278 1.60728 1.40891 1.08829 1.19862 1.19205 0.87731 0.89174 0.95708 1.21496 1.24615 1.16744 0.94592 0.91969 1.26040 0.96133 0.95116 1.02620 1.70113 1.32417 1.20409 1.34599 0.85252 0.77512 0.78762 0.78266 1.19187 1.20411 1.18925 0.92593 0.92203 0.83697 0.83953 0.84458 0.81927 0.81941 0.83095 0.85159 0.97247 0.91291 0.85440 0.97807 1.03251 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -7.22 10.57 -51.44 -0.54 -7.76 16 3 C 0.46 12.48 8.03 71.23 0.57 13.05 16 4 O -0.53 -20.90 16.25 28.39 0.46 -20.44 16 5 C 0.07 1.38 5.33 71.23 0.38 1.76 16 6 O -0.33 -10.61 8.83 -73.31 -0.65 -11.25 16 7 C 0.11 3.36 6.65 22.51 0.15 3.51 16 8 C -0.20 -3.96 9.04 22.37 0.20 -3.76 16 9 C -0.08 -1.31 10.04 22.26 0.22 -1.09 16 10 C -0.15 -3.06 10.04 22.28 0.22 -2.84 16 11 C -0.08 -2.13 9.67 22.25 0.22 -1.91 16 12 C -0.13 -4.24 5.41 -19.77 -0.11 -4.35 16 13 C 0.11 4.60 5.47 85.56 0.47 5.07 16 14 N -0.67 -34.04 6.48 -521.98 -3.38 -37.42 16 15 C 0.21 12.70 5.44 85.56 0.47 13.17 16 16 C -0.54 -33.57 9.32 25.60 0.24 -33.33 16 17 H 0.06 3.79 7.81 -2.91 -0.02 3.76 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.94 -60.34 13.29 21.45 0.28 -60.05 16 20 Si 0.98 47.08 29.54 68.60 2.03 49.11 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 24 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 25 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 26 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.14 1.77 7.65 -2.39 -0.02 1.76 16 28 H 0.14 1.93 7.67 -2.39 -0.02 1.91 16 29 H 0.16 1.85 6.30 -2.91 -0.02 1.83 16 30 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.13 3.44 8.04 -2.91 -0.02 3.42 16 33 H 0.01 0.44 7.86 -2.39 -0.02 0.42 16 34 H 0.07 2.89 8.00 -2.38 -0.02 2.87 16 35 H 0.33 16.76 8.63 -89.69 -0.77 15.99 16 36 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 37 H -0.05 -3.35 8.14 -2.39 -0.02 -3.37 16 38 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -84.10 333.81 3.18 -80.91 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.29 Total: 15.55 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.69 Total: -8.65 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -3.10 Total: -97.47 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.73 Total: -39.45 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -84.10 3.18 -80.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819012214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.419 kcal (2) G-P(sol) polarization free energy of solvation -84.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds