Wall clock time and date at job start Wed Apr 15 2020 11:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86797 * 120.00044 * 2 1 4 4 H 1.48493 * 109.47302 * 269.99929 * 3 2 1 5 5 H 1.48501 * 109.47451 * 30.00139 * 3 2 1 6 6 H 1.48508 * 109.47136 * 149.99736 * 3 2 1 7 7 C 1.40012 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99943 * 192.75389 * 7 2 1 9 9 C 1.41028 * 120.00174 * 12.76209 * 7 2 1 10 10 C 1.40932 * 120.11919 * 28.79062 * 9 7 2 11 11 C 1.36251 * 119.87348 * 180.02562 * 10 9 7 12 12 C 1.39932 * 120.12477 * 359.97438 * 11 10 9 13 13 C 1.47986 * 119.88185 * 180.02562 * 12 11 10 14 14 C 1.39451 * 119.97644 * 235.68157 * 13 12 11 15 15 C 1.37924 * 119.66109 * 179.91365 * 14 13 12 16 16 C 1.38199 * 120.02806 * 0.05719 * 15 14 13 17 17 C 1.38874 * 120.69276 * 0.05360 * 16 15 14 18 18 C 1.37568 * 119.80669 * 359.83600 * 17 16 15 19 19 C 1.50695 * 121.73795 * 180.32170 * 18 17 16 20 20 C 1.52903 * 109.96703 * 343.13265 * 19 18 17 21 21 N 1.47166 * 108.47577 * 50.32694 * 20 19 18 22 22 C 1.46629 * 110.24418 * 288.80429 * 21 20 19 23 23 C 1.39935 * 120.23581 * 0.27590 * 12 11 10 24 24 C 1.36254 * 120.12145 * 359.44340 * 23 12 11 25 25 H 0.97002 * 119.99480 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.05900 * 0.02562 * 10 9 7 27 27 H 1.08005 * 119.93571 * 180.02562 * 11 10 9 28 28 H 1.07994 * 120.17028 * 359.88069 * 14 13 12 29 29 H 1.07996 * 119.98068 * 179.78844 * 15 14 13 30 30 H 1.08004 * 119.65077 * 180.02562 * 16 15 14 31 31 H 1.08993 * 109.39496 * 103.28505 * 19 18 17 32 32 H 1.09008 * 109.38552 * 222.98726 * 19 18 17 33 33 H 1.08998 * 109.63494 * 170.02139 * 20 19 18 34 34 H 1.08996 * 109.63611 * 290.62646 * 20 19 18 35 35 H 1.00902 * 110.99637 * 165.38952 * 21 20 19 36 36 H 1.09001 * 109.26190 * 172.79689 * 22 21 20 37 37 H 1.08996 * 109.26704 * 292.29924 * 22 21 20 38 38 H 1.08004 * 119.93647 * 179.70571 * 23 12 11 39 39 H 1.08000 * 120.05575 * 180.25647 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.4895 2.0464 -1.4000 5 1 1.4395 2.6527 0.7001 6 1 3.5395 1.4401 0.7001 7 6 2.0079 -1.2126 0.0005 8 1 3.0680 -1.2241 0.2070 9 6 1.3289 -2.4189 -0.2687 10 6 0.1869 -2.4185 -1.0946 11 6 -0.4655 -3.5869 -1.3510 12 6 -0.0035 -4.7856 -0.7965 13 6 -0.7160 -6.0516 -1.0790 14 6 -1.1819 -6.8387 -0.0264 15 6 -1.8467 -8.0164 -0.2971 16 6 -2.0474 -8.4122 -1.6060 17 6 -1.5847 -7.6356 -2.6602 18 6 -0.9223 -6.4577 -2.4026 19 6 -0.4083 -5.5781 -3.5130 20 6 -0.3559 -6.3666 -4.8220 21 7 -1.6577 -7.0226 -5.0237 22 6 -1.8267 -8.1200 -4.0660 23 6 1.1268 -4.7909 0.0285 24 6 1.7902 -3.6292 0.2868 25 1 -0.4849 0.8401 -0.0004 26 1 -0.1702 -1.4940 -1.5234 27 1 -1.3406 -3.5878 -1.9841 28 1 -1.0226 -6.5280 0.9956 29 1 -2.2068 -8.6317 0.5141 30 1 -2.5691 -9.3354 -1.8110 31 1 -1.0717 -4.7217 -3.6329 32 1 0.5925 -5.2264 -3.2621 33 1 -0.1555 -5.6877 -5.6508 34 1 0.4292 -7.1205 -4.7642 35 1 -1.7530 -7.3528 -5.9724 36 1 -2.8415 -8.5107 -4.1422 37 1 -1.1172 -8.9137 -4.2995 38 1 1.4764 -5.7182 0.4578 39 1 2.6649 -3.6351 0.9203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236346754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:42 Heat of formation + Delta-G solvation = 32.844212 kcal Electronic energy + Delta-G solvation = -20737.540261 eV Core-core repulsion = 17801.343592 eV Total energy + Delta-G solvation = -2936.196669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.75859 -37.51696 -36.17401 -33.97839 -32.40975 -30.73699 -29.88168 -29.47771 -28.19886 -25.15236 -24.28947 -23.01563 -21.90481 -20.71583 -19.82980 -19.13347 -17.35338 -16.55732 -15.79437 -15.39890 -15.11753 -14.59396 -14.41815 -14.05193 -13.94249 -13.40059 -13.16481 -12.71960 -12.63684 -12.35866 -12.01957 -11.96046 -11.75810 -11.59184 -11.19707 -11.15248 -11.09277 -10.94907 -10.55337 -10.28959 -10.23086 -9.65400 -9.40035 -9.23975 -8.62085 -8.17043 -8.11220 -7.56985 -7.14241 -6.79806 -4.41393 1.72083 1.82729 2.73967 3.03900 3.07143 3.09348 3.15655 3.88414 4.16068 4.27902 4.59541 4.91433 5.09216 5.30984 5.37718 5.45736 5.49282 5.54380 5.56565 5.66532 5.82767 5.93457 6.12143 6.18202 6.22674 6.27328 6.43502 6.51927 6.60460 6.84047 6.88178 6.95260 7.00010 7.02505 7.12996 7.22515 7.30771 7.39002 7.49687 7.59266 7.87229 8.00294 8.07584 8.23460 8.57529 8.81730 8.91207 10.13368 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026379 B = 0.004309 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.186118 B = 6497.094485 C = 7111.112874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.118 3.882 10 C -0.164 4.164 11 C -0.076 4.076 12 C -0.196 4.196 13 C 0.010 3.990 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.142 4.142 17 C -0.086 4.086 18 C -0.069 4.069 19 C -0.071 4.071 20 C 0.054 3.946 21 N -0.685 5.685 22 C 0.102 3.898 23 C -0.069 4.069 24 C -0.227 4.227 25 H 0.282 0.718 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.032 0.968 35 H 0.340 0.660 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -10.619 -6.275 12.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.115 3.885 10 C -0.183 4.183 11 C -0.094 4.094 12 C -0.197 4.197 13 C 0.010 3.990 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.161 4.161 17 C -0.087 4.087 18 C -0.070 4.070 19 C -0.108 4.108 20 C -0.075 4.075 21 N -0.315 5.315 22 C -0.027 4.027 23 C -0.087 4.087 24 C -0.246 4.246 25 H 0.093 0.907 26 H 0.135 0.865 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.157 0.843 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.977 -9.978 -5.881 11.959 hybrid contribution 0.820 0.057 -0.122 0.831 sum -2.156 -9.922 -6.003 11.795 Atomic orbital electron populations 1.69795 1.07553 1.29343 1.34997 1.25947 0.94812 1.01367 0.92281 0.86263 0.80408 0.80429 0.79353 1.19223 1.20232 1.18591 1.19618 0.96578 0.90797 1.41766 0.90341 1.17692 0.91082 0.92020 0.87667 1.20999 0.99176 0.96635 1.01511 1.20459 0.97988 0.92355 0.98624 1.18020 1.00948 0.90980 1.09758 1.19015 0.94774 0.93835 0.91398 1.21286 0.99144 0.94976 0.98943 1.20865 1.00172 0.96966 0.96060 1.20814 1.02931 0.99876 0.92479 1.19371 0.99706 0.95449 0.94129 1.19629 0.98719 0.94544 0.94089 1.20536 1.02157 0.97245 0.90875 1.22065 0.89162 0.97485 0.98825 1.60606 1.33386 1.30292 1.07211 1.20705 1.00703 0.91661 0.89628 1.20298 0.95066 0.96464 0.96898 1.20704 1.03730 0.93393 1.06792 0.90734 0.86453 0.89278 0.86403 0.86834 0.87121 0.90016 0.89820 0.90534 0.94935 0.84278 0.90059 0.94506 0.89454 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.19 10.94 55.55 0.61 -19.58 16 2 C 0.07 1.82 5.21 -17.33 -0.09 1.73 16 3 Si 0.91 18.32 29.58 -169.99 -5.03 13.29 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.90 9.04 -37.86 -0.34 -12.24 16 8 H 0.08 1.96 7.88 -52.48 -0.41 1.54 16 9 C 0.12 3.08 5.54 -106.80 -0.59 2.49 16 10 C -0.16 -4.17 8.59 -39.28 -0.34 -4.51 16 11 C -0.08 -1.75 8.17 -39.66 -0.32 -2.08 16 12 C -0.20 -4.31 4.55 -104.63 -0.48 -4.78 16 13 C 0.01 0.19 5.41 -104.80 -0.57 -0.37 16 14 C -0.13 -2.23 9.60 -39.24 -0.38 -2.61 16 15 C -0.12 -1.87 10.03 -39.71 -0.40 -2.27 16 16 C -0.14 -2.08 9.64 -39.36 -0.38 -2.46 16 17 C -0.09 -1.36 5.79 -104.66 -0.61 -1.96 16 18 C -0.07 -1.24 5.78 -104.21 -0.60 -1.84 16 19 C -0.07 -1.18 4.45 -27.94 -0.12 -1.31 16 20 C 0.05 0.72 6.59 -3.73 -0.02 0.69 16 21 N -0.68 -8.58 6.88 -115.15 -0.79 -9.38 16 22 C 0.10 1.28 6.34 -5.15 -0.03 1.25 16 23 C -0.07 -1.54 9.52 -39.66 -0.38 -1.92 16 24 C -0.23 -5.48 9.73 -39.28 -0.38 -5.86 16 25 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 26 H 0.12 3.09 6.28 -52.49 -0.33 2.76 16 27 H 0.09 1.95 6.92 -52.48 -0.36 1.58 16 28 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.08 1.44 6.85 -51.93 -0.36 1.08 16 32 H 0.08 1.50 7.36 -51.92 -0.38 1.12 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.42 8.05 -51.93 -0.42 0.01 16 35 H 0.34 3.27 8.90 -39.29 -0.35 2.92 16 36 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -27.42 317.92 -11.58 -39.00 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.13 Total: 9.92 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: -6.03 Total: -38.05 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: -0.18 Total: -28.96 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.42 -11.58 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236346754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.846 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds