Wall clock time and date at job start Wed Apr 15 2020 11:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47299 * 162.37779 * 3 2 1 5 5 C 1.52999 * 109.47287 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47132 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99683 * 180.02562 * 6 5 4 8 8 O 1.21351 * 120.00295 * 0.02562 * 7 6 5 9 9 C 1.49448 * 119.99749 * 180.02562 * 7 6 5 10 10 O 1.21352 * 120.00058 * 354.98777 * 9 7 6 11 11 N 1.34783 * 120.00336 * 175.26827 * 9 7 6 12 12 C 1.46494 * 120.00419 * 185.50960 * 11 9 7 13 13 C 1.52998 * 109.47023 * 183.69145 * 12 11 9 14 14 C 1.50703 * 115.55013 * 306.40857 * 13 12 11 15 15 H 1.07994 * 119.99536 * 145.11396 * 14 13 12 16 16 C 1.37871 * 119.99632 * 325.11414 * 14 13 12 17 17 N 1.31516 * 120.00618 * 349.45167 * 16 14 13 18 18 Si 1.86804 * 119.99653 * 169.45353 * 16 14 13 19 19 H 1.48501 * 109.47265 * 60.00070 * 18 16 14 20 20 H 1.48501 * 109.47498 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47167 * 299.99998 * 18 16 14 22 22 C 1.53010 * 117.49711 * 160.74272 * 13 12 11 23 23 C 1.53001 * 117.50133 * 92.08533 * 13 12 11 24 24 H 1.09005 * 109.47071 * 42.37946 * 3 2 1 25 25 H 1.08997 * 109.47189 * 282.38490 * 3 2 1 26 26 H 1.09005 * 109.46922 * 60.00076 * 4 3 2 27 27 H 1.08997 * 109.47581 * 300.00471 * 4 3 2 28 28 H 1.09005 * 109.46917 * 60.00269 * 5 4 3 29 29 H 1.08994 * 109.47225 * 300.00311 * 5 4 3 30 30 H 0.97000 * 119.99926 * 0.02562 * 6 5 4 31 31 H 0.97004 * 119.99169 * 5.49828 * 11 9 7 32 32 H 1.09005 * 109.46858 * 303.68883 * 12 11 9 33 33 H 1.09000 * 109.47375 * 63.68800 * 12 11 9 34 34 H 0.96996 * 120.00080 * 185.03698 * 17 16 14 35 35 H 1.08995 * 117.49759 * 359.97438 * 22 13 12 36 36 H 1.08997 * 117.49853 * 145.01978 * 22 13 12 37 37 H 1.08996 * 117.49778 * 214.97964 * 23 13 12 38 38 H 1.09000 * 117.49938 * 359.96950 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3756 -0.4367 5 6 4.6474 1.3765 -0.4361 6 7 5.1352 2.6933 -0.8536 7 6 6.4602 2.9286 -0.9281 8 8 7.2491 2.0496 -0.6497 9 6 6.9578 4.2721 -1.3535 10 8 6.1726 5.1221 -1.7190 11 7 8.2790 4.5378 -1.3365 12 6 8.7584 5.8891 -1.6369 13 6 10.2883 5.8985 -1.6402 14 6 10.9444 5.3518 -0.3985 15 1 11.8726 4.8051 -0.4744 16 6 10.3594 5.5496 0.8342 17 7 9.3499 6.3835 0.9570 18 14 11.0009 4.6330 2.3302 19 1 12.4276 4.9814 2.5500 20 1 10.2079 5.0190 3.5249 21 1 10.8775 3.1703 2.1050 22 6 10.9861 7.0567 -2.3563 23 6 10.9934 5.6572 -2.9764 24 1 2.9717 -0.7583 -0.6927 25 1 2.9715 -0.2196 1.0037 26 1 2.7538 2.1346 0.2560 27 1 2.7540 1.5959 -1.4404 28 1 5.0115 0.6174 -1.1285 29 1 5.0105 1.1565 0.5678 30 1 4.5045 3.3958 -1.0765 31 1 8.9125 3.8342 -1.1253 32 1 8.3910 6.1956 -2.6163 33 1 8.3924 6.5814 -0.8786 34 1 8.9858 6.5783 1.8346 35 1 10.3552 7.8116 -2.8254 36 1 11.9199 7.4229 -1.9296 37 1 11.9319 5.1033 -2.9574 38 1 10.3673 5.4912 -3.8531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261227557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:46 Heat of formation + Delta-G solvation = -29.090714 kcal Electronic energy + Delta-G solvation = -20989.359698 eV Core-core repulsion = 17639.628067 eV Total energy + Delta-G solvation = -3349.731632 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.11418 -38.19005 -37.38488 -36.70182 -35.74592 -33.43926 -32.70921 -32.20900 -28.00159 -26.54063 -25.52347 -23.36778 -22.01387 -21.25384 -19.76980 -19.38903 -18.08670 -17.89731 -16.38681 -16.36370 -16.20412 -15.34242 -15.03828 -14.78307 -14.57748 -14.20571 -14.17600 -13.77069 -13.35566 -13.12989 -13.00536 -12.63602 -12.26401 -12.09447 -11.92095 -11.82069 -11.55937 -11.29910 -11.16840 -11.01460 -10.85473 -10.54407 -10.31527 -9.67589 -9.22407 -9.19189 -9.01484 -8.88699 -8.35320 -8.03675 -6.12798 -4.22187 1.94328 2.33209 2.43377 2.81966 3.23977 3.30067 3.33686 3.57130 3.78625 4.16258 4.28685 4.47773 4.61994 4.63311 4.87653 5.02423 5.08741 5.19529 5.33995 5.45527 5.63442 5.70803 5.94422 6.23657 6.28247 6.47147 6.53872 6.63562 6.81592 6.98470 7.16283 7.19786 7.24100 7.37439 7.46302 7.84167 7.98123 8.25365 8.33900 8.74730 8.78397 9.39411 10.84574 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.003669 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.714669 B = 7629.799445 C = 8376.772513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.207 3.793 3 C -0.022 4.022 4 C -0.131 4.131 5 C 0.118 3.882 6 N -0.711 5.711 7 C 0.510 3.490 8 O -0.519 6.519 9 C 0.494 3.506 10 O -0.548 6.548 11 N -0.649 5.649 12 C 0.158 3.842 13 C 0.035 3.965 14 C -0.500 4.500 15 H 0.063 0.937 16 C 0.076 3.924 17 N -0.872 5.872 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.271 1.271 22 C -0.193 4.193 23 C -0.211 4.211 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.412 0.588 31 H 0.413 0.587 32 H 0.035 0.965 33 H 0.115 0.885 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -9.291 -2.224 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.111 4.111 3 C -0.063 4.063 4 C -0.170 4.170 5 C -0.005 4.005 6 N -0.366 5.366 7 C 0.291 3.709 8 O -0.394 6.394 9 C 0.273 3.727 10 O -0.429 6.429 11 N -0.298 5.298 12 C 0.035 3.965 13 C 0.034 3.966 14 C -0.537 4.537 15 H 0.082 0.918 16 C -0.129 4.129 17 N -0.508 5.508 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.232 4.232 23 C -0.248 4.248 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.249 0.751 31 H 0.250 0.750 32 H 0.053 0.947 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.246 -9.290 -2.111 13.991 hybrid contribution 0.845 -0.352 0.849 1.248 sum -9.401 -9.642 -1.262 13.526 Atomic orbital electron populations 1.81262 1.13150 1.08267 1.08833 1.29169 0.95284 0.93398 0.93219 1.19178 0.81568 0.99699 1.05819 1.21749 0.95124 0.96347 1.03803 1.21353 0.92428 0.85134 1.01618 1.45678 1.07114 1.15085 1.68725 1.20597 0.82820 0.89315 0.78182 1.90750 1.55200 1.46219 1.47230 1.19767 0.84371 0.87393 0.81201 1.90685 1.55553 1.47999 1.48631 1.45715 1.05342 1.14498 1.64206 1.21221 0.93672 0.82319 0.99243 1.19164 0.89934 0.97138 0.90319 1.20472 1.08121 1.35579 0.89490 0.91844 1.24972 0.94406 0.94564 0.98954 1.69812 1.24442 1.32626 1.23890 0.86640 0.78864 0.80811 0.81772 1.20194 1.21204 1.19653 1.22930 1.03096 0.90821 1.06365 1.22979 1.02831 1.00650 0.98376 0.86787 0.86768 0.89959 0.89983 0.90563 0.90549 0.75137 0.75021 0.94725 0.86745 0.92514 0.91419 0.90072 0.90452 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.90 18.54 42.15 0.78 -4.12 16 2 C 0.21 1.55 15.43 -20.76 -0.32 1.23 16 3 C -0.02 -0.08 5.70 -29.52 -0.17 -0.24 16 4 C -0.13 -0.65 5.28 -26.73 -0.14 -0.79 16 5 C 0.12 0.94 5.67 -4.04 -0.02 0.92 16 6 N -0.71 -8.50 5.55 -60.73 -0.34 -8.83 16 7 C 0.51 8.52 7.89 -11.59 -0.09 8.43 16 8 O -0.52 -9.73 16.49 5.50 0.09 -9.64 16 9 C 0.49 9.73 7.88 -11.58 -0.09 9.64 16 10 O -0.55 -11.52 16.48 5.49 0.09 -11.43 16 11 N -0.65 -13.81 5.27 -60.73 -0.32 -14.13 16 12 C 0.16 3.58 4.75 -4.05 -0.02 3.56 16 13 C 0.04 0.81 2.00 -155.65 -0.31 0.50 16 14 C -0.50 -12.54 8.27 -34.44 -0.28 -12.82 16 15 H 0.06 1.60 7.84 -52.49 -0.41 1.19 16 16 C 0.08 1.91 5.13 -17.82 -0.09 1.82 16 17 N -0.87 -22.73 10.75 55.43 0.60 -22.14 16 18 Si 0.89 20.05 29.55 -169.99 -5.02 15.03 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C -0.19 -4.12 9.96 -26.69 -0.27 -4.39 16 23 C -0.21 -4.29 9.92 -26.69 -0.26 -4.56 16 24 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.41 4.50 7.95 -40.82 -0.32 4.17 16 31 H 0.41 8.95 7.41 -40.82 -0.30 8.64 16 32 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 33 H 0.11 2.92 6.04 -51.93 -0.31 2.61 16 34 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -30.77 338.86 -6.22 -37.00 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -5.13 Total: 9.87 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.07 Total: 3.29 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.72 Total: -49.23 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.18 Total: -21.07 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.77 -6.22 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.906 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds