Wall clock time and date at job start Wed Apr 15 2020 11:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47299 * 162.37779 * 3 2 1 5 5 C 1.52999 * 109.47287 * 179.97438 * 4 3 2 6 6 N 1.46501 * 109.47132 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99683 * 180.02562 * 6 5 4 8 8 O 1.21351 * 120.00295 * 0.02562 * 7 6 5 9 9 C 1.49448 * 119.99749 * 180.02562 * 7 6 5 10 10 O 1.21352 * 120.00058 * 354.98777 * 9 7 6 11 11 N 1.34783 * 120.00336 * 175.26827 * 9 7 6 12 12 C 1.46494 * 120.00419 * 185.50960 * 11 9 7 13 13 C 1.52998 * 109.47023 * 183.69145 * 12 11 9 14 14 C 1.50703 * 115.55013 * 306.40857 * 13 12 11 15 15 H 1.07994 * 119.99536 * 145.11396 * 14 13 12 16 16 C 1.37871 * 119.99632 * 325.11414 * 14 13 12 17 17 N 1.31516 * 120.00618 * 349.45167 * 16 14 13 18 18 Si 1.86804 * 119.99653 * 169.45353 * 16 14 13 19 19 H 1.48501 * 109.47265 * 60.00070 * 18 16 14 20 20 H 1.48501 * 109.47498 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47167 * 299.99998 * 18 16 14 22 22 C 1.53010 * 117.49711 * 160.74272 * 13 12 11 23 23 C 1.53001 * 117.50133 * 92.08533 * 13 12 11 24 24 H 1.09005 * 109.47071 * 42.37946 * 3 2 1 25 25 H 1.08997 * 109.47189 * 282.38490 * 3 2 1 26 26 H 1.09005 * 109.46922 * 60.00076 * 4 3 2 27 27 H 1.08997 * 109.47581 * 300.00471 * 4 3 2 28 28 H 1.09005 * 109.46917 * 60.00269 * 5 4 3 29 29 H 1.08994 * 109.47225 * 300.00311 * 5 4 3 30 30 H 0.97000 * 119.99926 * 0.02562 * 6 5 4 31 31 H 0.97004 * 119.99169 * 5.49828 * 11 9 7 32 32 H 1.09005 * 109.46858 * 303.68883 * 12 11 9 33 33 H 1.09000 * 109.47375 * 63.68800 * 12 11 9 34 34 H 0.96996 * 120.00080 * 185.03698 * 17 16 14 35 35 H 1.08995 * 117.49759 * 359.97438 * 22 13 12 36 36 H 1.08997 * 117.49853 * 145.01978 * 22 13 12 37 37 H 1.08996 * 117.49778 * 214.97964 * 23 13 12 38 38 H 1.09000 * 117.49938 * 359.96950 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3756 -0.4367 5 6 4.6474 1.3765 -0.4361 6 7 5.1352 2.6933 -0.8536 7 6 6.4602 2.9286 -0.9281 8 8 7.2491 2.0496 -0.6497 9 6 6.9578 4.2721 -1.3535 10 8 6.1726 5.1221 -1.7190 11 7 8.2790 4.5378 -1.3365 12 6 8.7584 5.8891 -1.6369 13 6 10.2883 5.8985 -1.6402 14 6 10.9444 5.3518 -0.3985 15 1 11.8726 4.8051 -0.4744 16 6 10.3594 5.5496 0.8342 17 7 9.3499 6.3835 0.9570 18 14 11.0009 4.6330 2.3302 19 1 12.4276 4.9814 2.5500 20 1 10.2079 5.0190 3.5249 21 1 10.8775 3.1703 2.1050 22 6 10.9861 7.0567 -2.3563 23 6 10.9934 5.6572 -2.9764 24 1 2.9717 -0.7583 -0.6927 25 1 2.9715 -0.2196 1.0037 26 1 2.7538 2.1346 0.2560 27 1 2.7540 1.5959 -1.4404 28 1 5.0115 0.6174 -1.1285 29 1 5.0105 1.1565 0.5678 30 1 4.5045 3.3958 -1.0765 31 1 8.9125 3.8342 -1.1253 32 1 8.3910 6.1956 -2.6163 33 1 8.3924 6.5814 -0.8786 34 1 8.9858 6.5783 1.8346 35 1 10.3552 7.8116 -2.8254 36 1 11.9199 7.4229 -1.9296 37 1 11.9319 5.1033 -2.9574 38 1 10.3673 5.4912 -3.8531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261227557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:44 Heat of formation + Delta-G solvation = -50.602228 kcal Electronic energy + Delta-G solvation = -20990.292508 eV Core-core repulsion = 17639.628067 eV Total energy + Delta-G solvation = -3350.664441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.49289 -39.62075 -38.40569 -38.06578 -36.65090 -34.88557 -34.13378 -33.62944 -29.01635 -27.98199 -27.34386 -24.55358 -22.94896 -22.74481 -21.22895 -21.07274 -19.47458 -18.58093 -17.99536 -17.62348 -17.14132 -16.71312 -16.36713 -16.28494 -16.00221 -15.44531 -15.12865 -14.82211 -14.79598 -14.34578 -14.28536 -13.70562 -13.58919 -13.39342 -12.91530 -12.85132 -12.75701 -12.68207 -12.58024 -12.36187 -12.29517 -12.03286 -11.69138 -11.41306 -11.07077 -10.67109 -10.53656 -10.19966 -10.12211 -9.78223 -8.03429 -6.17682 0.52250 1.44175 1.48457 1.49598 1.53620 1.86491 1.88245 2.32943 2.42945 2.83032 3.06231 3.15052 3.61426 3.73622 4.10660 4.10945 4.20074 4.24796 4.52710 4.68518 4.69869 4.73634 4.78557 4.89029 4.99356 5.09824 5.19110 5.20310 5.29025 5.33440 5.50749 5.59950 5.61918 5.91820 6.11848 6.37866 6.59753 6.66570 6.82856 6.93079 7.17621 7.45239 8.91385 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.003669 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.714669 B = 7629.799445 C = 8376.772513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.238 3.762 3 C -0.015 4.015 4 C -0.122 4.122 5 C 0.113 3.887 6 N -0.691 5.691 7 C 0.513 3.487 8 O -0.543 6.543 9 C 0.488 3.512 10 O -0.565 6.565 11 N -0.656 5.656 12 C 0.170 3.830 13 C 0.005 3.995 14 C -0.509 4.509 15 H 0.057 0.943 16 C 0.040 3.960 17 N -0.892 5.892 18 Si 0.941 3.059 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.270 1.270 22 C -0.193 4.193 23 C -0.188 4.188 24 H 0.143 0.857 25 H 0.139 0.861 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.418 0.582 31 H 0.410 0.590 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 -10.686 -2.443 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.079 4.079 3 C -0.055 4.055 4 C -0.161 4.161 5 C -0.009 4.009 6 N -0.345 5.345 7 C 0.293 3.707 8 O -0.420 6.420 9 C 0.269 3.731 10 O -0.446 6.446 11 N -0.304 5.304 12 C 0.047 3.953 13 C 0.005 3.995 14 C -0.546 4.546 15 H 0.075 0.925 16 C -0.162 4.162 17 N -0.529 5.529 18 Si 0.767 3.233 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.195 1.195 22 C -0.231 4.231 23 C -0.225 4.225 24 H 0.161 0.839 25 H 0.157 0.843 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.255 0.745 31 H 0.247 0.753 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.273 -10.694 -2.337 15.012 hybrid contribution 0.842 0.097 0.875 1.218 sum -9.431 -10.597 -1.462 14.261 Atomic orbital electron populations 1.81296 1.15520 1.10643 1.11471 1.29832 0.95834 0.91238 0.90970 1.19413 0.78685 0.99371 1.08078 1.21643 0.92812 0.97384 1.04239 1.21664 0.94211 0.82984 1.02042 1.45723 1.05359 1.16876 1.66497 1.20003 0.84288 0.87607 0.78795 1.90742 1.56085 1.46237 1.48975 1.20389 0.83717 0.88747 0.80279 1.90663 1.55742 1.49074 1.49151 1.45681 1.06079 1.13800 1.64858 1.20899 0.93551 0.82639 0.98251 1.19234 0.90174 0.99046 0.91075 1.20667 1.07989 1.35403 0.90573 0.92454 1.25497 0.94717 0.95097 1.00907 1.69951 1.25392 1.33731 1.23850 0.85867 0.78324 0.79770 0.79298 1.19935 1.21419 1.19548 1.22937 1.02719 0.91412 1.06056 1.22979 1.02653 0.99517 0.97346 0.83918 0.84282 0.90063 0.89583 0.89352 0.90084 0.74454 0.75349 0.94329 0.89840 0.92989 0.90221 0.90585 0.89901 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.14 18.54 20.01 0.37 -10.77 16 2 C 0.24 3.07 15.43 89.44 1.38 4.45 16 3 C -0.02 -0.05 5.70 28.79 0.16 0.12 16 4 C -0.12 -0.81 5.28 30.59 0.16 -0.65 16 5 C 0.11 1.44 5.67 86.38 0.49 1.93 16 6 N -0.69 -15.11 5.55 -464.41 -2.58 -17.68 16 7 C 0.51 16.55 7.89 87.27 0.69 17.24 16 8 O -0.54 -19.70 16.49 -3.25 -0.05 -19.75 16 9 C 0.49 19.12 7.88 87.27 0.69 19.81 16 10 O -0.57 -23.63 16.48 -3.25 -0.05 -23.68 16 11 N -0.66 -27.97 5.27 -464.41 -2.45 -30.42 16 12 C 0.17 7.74 4.75 86.38 0.41 8.15 16 13 C 0.01 0.25 2.00 -52.92 -0.11 0.14 16 14 C -0.51 -25.51 8.27 25.60 0.21 -25.29 16 15 H 0.06 2.87 7.84 -2.91 -0.02 2.85 16 16 C 0.04 2.02 5.13 84.65 0.43 2.45 16 17 N -0.89 -47.08 10.75 21.45 0.23 -46.85 16 18 Si 0.94 41.06 29.55 68.60 2.03 43.08 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C -0.19 -8.02 9.96 30.62 0.30 -7.71 16 23 C -0.19 -7.33 9.92 30.62 0.30 -7.02 16 24 H 0.14 -0.24 8.14 -2.38 -0.02 -0.26 16 25 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.42 8.32 7.95 -92.71 -0.74 7.58 16 31 H 0.41 17.84 7.41 -92.70 -0.69 17.15 16 32 H 0.04 1.68 8.06 -2.38 -0.02 1.66 16 33 H 0.08 4.35 6.04 -2.39 -0.01 4.34 16 34 H 0.26 13.45 8.32 -92.71 -0.77 12.68 16 35 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -67.20 338.86 2.30 -64.90 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.33 Total: 27.57 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.13 Total: 13.61 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -4.42 Total: -105.73 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.11 Total: -43.43 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -67.20 2.30 -64.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.295 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds