Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48499 * 109.47107 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47057 * 29.99749 * 3 2 1 6 6 H 1.48493 * 109.47303 * 149.99745 * 3 2 1 7 7 C 1.38946 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99642 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00135 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99700 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00010 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47324 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47324 * 179.97438 * 13 12 10 15 15 N 1.31127 * 126.54893 * 90.25246 * 14 13 12 16 16 C 1.34503 * 105.61268 * 180.12089 * 15 14 13 17 17 C 1.50704 * 126.28664 * 179.90344 * 16 15 14 18 18 C 1.54887 * 110.48381 * 124.93780 * 17 16 15 19 19 C 1.54893 * 102.74533 * 156.62255 * 18 17 16 20 20 C 1.54266 * 104.19500 * 322.05712 * 19 18 17 21 21 C 1.53872 * 106.60044 * 23.61099 * 20 19 18 22 22 N 1.29940 * 107.42238 * 359.64275 * 16 15 14 23 23 O 1.21304 * 110.25492 * 0.22130 * 22 16 15 24 24 H 0.96993 * 120.00500 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99999 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47010 * 60.00333 * 12 10 9 27 27 H 1.08997 * 109.47313 * 299.99668 * 12 10 9 28 28 H 1.09003 * 109.47062 * 59.99775 * 13 12 10 29 29 H 1.09004 * 109.46851 * 300.00390 * 13 12 10 30 30 H 1.09001 * 110.53750 * 2.32590 * 17 16 15 31 31 H 1.09001 * 110.75744 * 274.93157 * 18 17 16 32 32 H 1.09000 * 110.75698 * 38.30975 * 18 17 16 33 33 H 1.09002 * 110.48578 * 203.38190 * 19 18 17 34 34 H 1.09001 * 110.49013 * 80.73631 * 19 18 17 35 35 H 1.09002 * 110.02957 * 264.32709 * 20 19 18 36 36 H 1.09000 * 110.07144 * 142.92082 * 20 19 18 37 37 H 1.09003 * 110.03622 * 240.71485 * 21 20 19 38 38 H 1.09005 * 110.03465 * 119.28158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0030 12 6 1.2440 -4.8629 0.0022 13 6 2.2382 -6.0258 0.0027 14 6 1.4848 -7.3309 0.0039 15 7 1.0981 -8.0103 -1.0489 16 6 0.4660 -9.0955 -0.5672 17 6 -0.1674 -10.1936 -1.3821 18 6 0.4055 -11.5727 -0.9712 19 6 -0.7137 -12.5511 -1.4065 20 6 -2.0210 -11.7991 -1.0817 21 6 -1.6736 -10.3002 -1.0662 22 7 0.5067 -9.0258 0.7296 23 8 1.0877 -8.0196 1.0781 24 1 -0.4850 0.8399 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.6177 -4.9212 -0.8880 27 1 0.6170 -4.9201 0.8919 28 1 2.8649 -5.9676 0.8926 29 1 2.8649 -5.9684 -0.8873 30 1 -0.0124 -10.0179 -2.4466 31 1 1.3312 -11.7818 -1.5073 32 1 0.5626 -11.6203 0.1063 33 1 -0.6543 -13.4773 -0.8348 34 1 -0.6470 -12.7562 -2.4749 35 1 -2.3953 -12.1058 -0.1049 36 1 -2.7691 -12.0012 -1.8482 37 1 -1.8794 -9.8793 -0.0820 38 1 -2.2526 -9.7749 -1.8258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135516110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = 2.605141 kcal Electronic energy + Delta-G solvation = -20735.179175 eV Core-core repulsion = 17386.821978 eV Total energy + Delta-G solvation = -3348.357196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.52500 -38.61036 -38.38025 -35.71014 -34.40736 -33.72280 -31.41012 -30.91311 -29.14674 -29.05594 -26.17467 -24.21903 -23.75281 -22.30278 -20.79469 -19.84325 -19.23174 -18.07951 -17.80198 -17.54899 -16.26021 -15.90594 -15.61478 -14.97713 -14.66203 -14.06864 -13.95593 -13.79371 -13.73045 -12.92659 -12.69837 -12.43932 -12.24349 -12.05355 -11.84600 -11.57648 -11.53640 -11.45204 -11.17596 -11.14994 -11.05338 -10.92467 -10.81416 -10.73279 -10.42545 -10.26596 -9.78247 -9.57610 -8.51751 -8.04035 -6.47068 -3.88481 1.18763 2.23495 2.88623 3.14870 3.24517 3.30135 3.52943 3.81672 3.98079 4.14264 4.28104 4.38703 4.53276 4.81845 5.03792 5.10062 5.15003 5.15694 5.17315 5.22033 5.32119 5.36114 5.42043 5.54386 5.58792 5.64104 5.77395 5.83308 5.85652 5.96369 6.00005 6.04254 6.18918 6.22557 6.30052 7.50498 7.98709 8.22246 8.52182 9.10732 9.46611 9.96106 10.70292 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.043586 B = 0.002712 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.251198 B =10322.867655 C =10669.182405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.105 0.895 9 N -0.557 5.557 10 C 0.441 3.559 11 O -0.597 6.597 12 C -0.127 4.127 13 C -0.009 4.009 14 C 0.197 3.803 15 N -0.485 5.485 16 C 0.175 3.825 17 C -0.003 4.003 18 C -0.116 4.116 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.117 4.117 22 N -0.388 5.388 23 O 0.074 5.926 24 H 0.273 0.727 25 H 0.394 0.606 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -20.565 -1.827 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.192 5.192 10 C 0.227 3.773 11 O -0.483 6.483 12 C -0.169 4.169 13 C -0.048 4.048 14 C -0.023 4.023 15 N -0.219 5.219 16 C -0.097 4.097 17 C -0.023 4.023 18 C -0.154 4.154 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.155 4.155 22 N -0.096 5.096 23 O 0.016 5.984 24 H 0.083 0.917 25 H 0.227 0.773 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.817 -21.073 -1.725 21.485 hybrid contribution -0.233 1.091 0.037 1.117 sum -4.050 -19.982 -1.688 20.458 Atomic orbital electron populations 1.69608 1.06001 1.28356 1.50002 1.25299 0.95641 0.99867 0.97046 0.85839 0.79251 0.80650 0.78454 1.20328 1.20885 1.19324 1.19738 0.93453 0.82161 1.47870 0.87728 1.41871 1.09350 1.04637 1.63306 1.19594 0.88110 0.84662 0.84923 1.90536 1.13755 1.87289 1.56735 1.21461 0.98413 0.93080 1.03962 1.20017 0.95795 0.81644 1.07358 1.29145 0.95274 0.97590 0.80269 1.71955 1.15709 1.05235 1.28991 1.25672 0.99186 0.96433 0.88452 1.20410 0.94441 0.89131 0.98277 1.22597 0.98439 0.92391 1.02017 1.22345 0.94155 0.98097 1.01416 1.22118 0.97709 0.94217 1.01952 1.22224 0.93514 0.97172 1.02614 1.74537 1.15687 1.03764 1.15656 1.85306 1.52159 1.24928 1.35958 0.91733 0.77261 0.89563 0.89709 0.87290 0.86476 0.87678 0.90946 0.90666 0.91225 0.91205 0.91534 0.91436 0.91188 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -13.70 5.29 -10.96 -0.06 -13.75 16 10 C 0.44 9.84 7.78 -10.99 -0.09 9.75 16 11 O -0.60 -15.18 15.56 5.54 0.09 -15.09 16 12 C -0.13 -2.08 5.68 -27.88 -0.16 -2.24 16 13 C -0.01 -0.13 5.13 -27.88 -0.14 -0.27 16 14 C 0.20 2.86 7.77 -13.06 -0.10 2.76 16 15 N -0.49 -7.35 11.55 -9.87 -0.11 -7.47 16 16 C 0.18 2.42 6.73 -156.37 -1.05 1.37 16 17 C 0.00 -0.03 3.39 -90.11 -0.31 -0.33 16 18 C -0.12 -1.03 6.32 -24.74 -0.16 -1.19 16 19 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 20 C -0.12 -0.89 6.80 -25.61 -0.17 -1.07 16 21 C -0.12 -1.08 6.36 -25.61 -0.16 -1.25 16 22 N -0.39 -5.67 11.84 30.90 0.37 -5.31 16 23 O 0.07 1.08 11.31 18.11 0.20 1.29 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 26 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.11 1.51 8.10 -51.93 -0.42 1.09 16 29 H 0.12 1.75 8.10 -51.93 -0.42 1.33 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.76 7.89 -51.93 -0.41 0.35 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.75 7.72 -51.93 -0.40 0.35 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 325.90 15.07 4.91 4.91 Total: -1.00 -30.49 325.90 -6.94 -37.44 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -5.29 Total: 7.08 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.75 Total: -1.34 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.92 Total: -49.90 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.29 Total: -13.80 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.49 -6.94 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135516110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.044 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds