Wall clock time and date at job start Wed Apr 15 2020 11:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48499 * 109.47107 * 270.00002 * 3 2 1 5 5 H 1.48505 * 109.47057 * 29.99749 * 3 2 1 6 6 H 1.48493 * 109.47303 * 149.99745 * 3 2 1 7 7 C 1.38946 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99642 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00135 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99700 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00010 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47324 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47324 * 179.97438 * 13 12 10 15 15 N 1.31127 * 126.54893 * 90.25246 * 14 13 12 16 16 C 1.34503 * 105.61268 * 180.12089 * 15 14 13 17 17 C 1.50704 * 126.28664 * 179.90344 * 16 15 14 18 18 C 1.54887 * 110.48381 * 124.93780 * 17 16 15 19 19 C 1.54893 * 102.74533 * 156.62255 * 18 17 16 20 20 C 1.54266 * 104.19500 * 322.05712 * 19 18 17 21 21 C 1.53872 * 106.60044 * 23.61099 * 20 19 18 22 22 N 1.29940 * 107.42238 * 359.64275 * 16 15 14 23 23 O 1.21304 * 110.25492 * 0.22130 * 22 16 15 24 24 H 0.96993 * 120.00500 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99999 * 359.97438 * 9 7 2 26 26 H 1.08999 * 109.47010 * 60.00333 * 12 10 9 27 27 H 1.08997 * 109.47313 * 299.99668 * 12 10 9 28 28 H 1.09003 * 109.47062 * 59.99775 * 13 12 10 29 29 H 1.09004 * 109.46851 * 300.00390 * 13 12 10 30 30 H 1.09001 * 110.53750 * 2.32590 * 17 16 15 31 31 H 1.09001 * 110.75744 * 274.93157 * 18 17 16 32 32 H 1.09000 * 110.75698 * 38.30975 * 18 17 16 33 33 H 1.09002 * 110.48578 * 203.38190 * 19 18 17 34 34 H 1.09001 * 110.49013 * 80.73631 * 19 18 17 35 35 H 1.09002 * 110.02957 * 264.32709 * 20 19 18 36 36 H 1.09000 * 110.07144 * 142.92082 * 20 19 18 37 37 H 1.09003 * 110.03622 * 240.71485 * 21 20 19 38 38 H 1.09005 * 110.03465 * 119.28158 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0016 11 8 3.2104 -3.5577 0.0030 12 6 1.2440 -4.8629 0.0022 13 6 2.2382 -6.0258 0.0027 14 6 1.4848 -7.3309 0.0039 15 7 1.0981 -8.0103 -1.0489 16 6 0.4660 -9.0955 -0.5672 17 6 -0.1674 -10.1936 -1.3821 18 6 0.4055 -11.5727 -0.9712 19 6 -0.7137 -12.5511 -1.4065 20 6 -2.0210 -11.7991 -1.0817 21 6 -1.6736 -10.3002 -1.0662 22 7 0.5067 -9.0258 0.7296 23 8 1.0877 -8.0196 1.0781 24 1 -0.4850 0.8399 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.6177 -4.9212 -0.8880 27 1 0.6170 -4.9201 0.8919 28 1 2.8649 -5.9676 0.8926 29 1 2.8649 -5.9684 -0.8873 30 1 -0.0124 -10.0179 -2.4466 31 1 1.3312 -11.7818 -1.5073 32 1 0.5626 -11.6203 0.1063 33 1 -0.6543 -13.4773 -0.8348 34 1 -0.6470 -12.7562 -2.4749 35 1 -2.3953 -12.1058 -0.1049 36 1 -2.7691 -12.0012 -1.8482 37 1 -1.8794 -9.8793 -0.0820 38 1 -2.2526 -9.7749 -1.8258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135516110.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:41 Heat of formation + Delta-G solvation = -17.565822 kcal Electronic energy + Delta-G solvation = -20736.053853 eV Core-core repulsion = 17386.821978 eV Total energy + Delta-G solvation = -3349.231875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.65474 -40.21303 -39.33957 -36.85726 -36.11134 -35.17834 -33.30186 -32.22518 -29.96374 -29.71818 -27.82589 -25.84130 -24.83413 -23.39763 -21.41143 -21.07657 -20.66538 -19.89627 -19.09895 -18.64932 -17.80784 -16.76072 -16.61082 -16.44951 -16.35385 -15.82628 -15.33530 -14.68539 -14.43134 -14.37837 -14.23597 -13.55681 -13.43945 -13.41287 -13.28294 -12.91600 -12.75062 -12.40726 -12.23353 -12.17536 -12.11855 -12.11621 -12.06997 -12.00976 -11.69788 -11.50969 -11.36913 -10.88495 -10.39185 -10.02612 -8.46690 -5.95706 0.04501 1.13320 1.39274 1.44026 1.56443 1.71730 2.02743 2.31013 2.52538 2.96203 3.21090 3.25508 3.59444 3.66561 3.74181 3.85725 4.09549 4.12047 4.38853 4.41970 4.45835 4.50200 4.54306 4.64988 4.69226 4.73065 4.78631 4.85884 4.96763 5.00306 5.02746 5.18074 5.21323 5.28864 5.42596 5.43445 5.98900 6.56614 7.09944 7.11018 7.54237 8.07336 8.70613 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.043586 B = 0.002712 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.251198 B =10322.867655 C =10669.182405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.084 0.916 9 N -0.570 5.570 10 C 0.444 3.556 11 O -0.629 6.629 12 C -0.113 4.113 13 C 0.000 4.000 14 C 0.202 3.798 15 N -0.501 5.501 16 C 0.176 3.824 17 C -0.008 4.008 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.115 4.115 22 N -0.400 5.400 23 O 0.069 5.931 24 H 0.278 0.722 25 H 0.397 0.603 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -21.556 -2.320 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.102 0.898 9 N -0.206 5.206 10 C 0.232 3.768 11 O -0.517 6.517 12 C -0.155 4.155 13 C -0.039 4.039 14 C -0.018 4.018 15 N -0.235 5.235 16 C -0.096 4.096 17 C -0.028 4.028 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.154 4.154 22 N -0.110 5.110 23 O 0.013 5.987 24 H 0.087 0.913 25 H 0.231 0.769 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.464 -22.075 -2.210 22.630 hybrid contribution -0.025 1.322 0.185 1.335 sum -4.489 -20.754 -2.025 21.330 Atomic orbital electron populations 1.69672 1.06932 1.29374 1.50166 1.26069 0.96511 1.02563 0.96193 0.84921 0.77962 0.76806 0.78642 1.19673 1.19760 1.19500 1.19726 0.92896 0.83878 1.49855 0.89800 1.41959 1.09477 1.04824 1.64367 1.20532 0.87974 0.85884 0.82410 1.90514 1.15576 1.88103 1.57499 1.21346 0.98344 0.90083 1.05694 1.19872 0.95286 0.81077 1.07645 1.28974 0.95108 0.97439 0.80321 1.71975 1.16251 1.05904 1.29382 1.26276 0.98347 0.96573 0.88440 1.20680 0.95117 0.88858 0.98190 1.22592 0.99500 0.92034 1.01151 1.22346 0.92791 0.97804 1.02420 1.22122 0.98352 0.92606 1.02606 1.22227 0.92720 0.98765 1.01683 1.74542 1.16278 1.03921 1.16219 1.85296 1.52329 1.25069 1.35980 0.91286 0.76892 0.88158 0.87500 0.86598 0.86804 0.86910 0.90417 0.92152 0.90159 0.89827 0.91524 0.89847 0.93053 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.13 13.05 21.66 0.28 -48.84 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.10 29.55 68.60 2.03 44.12 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.57 -28.30 5.29 -306.98 -1.62 -29.92 16 10 C 0.44 19.77 7.78 87.66 0.68 20.46 16 11 O -0.63 -32.27 15.56 -3.09 -0.05 -32.32 16 12 C -0.11 -3.57 5.68 29.85 0.17 -3.40 16 13 C 0.00 0.01 5.13 29.85 0.15 0.17 16 14 C 0.20 5.65 7.77 88.38 0.69 6.34 16 15 N -0.50 -14.67 11.55 -303.19 -3.50 -18.17 16 16 C 0.18 4.71 6.73 138.46 0.93 5.64 16 17 C -0.01 -0.16 3.39 -10.46 -0.04 -0.20 16 18 C -0.11 -1.86 6.32 31.89 0.20 -1.66 16 19 C -0.12 -1.32 6.83 31.67 0.22 -1.10 16 20 C -0.12 -1.48 6.80 31.32 0.21 -1.26 16 21 C -0.12 -1.98 6.36 31.32 0.20 -1.78 16 22 N -0.40 -11.43 11.84 -60.31 -0.71 -12.15 16 23 O 0.07 1.96 11.31 74.85 0.85 2.81 16 24 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 25 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 26 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 28 H 0.12 3.11 8.10 -2.39 -0.02 3.09 16 29 H 0.11 3.32 8.10 -2.38 -0.02 3.30 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.16 7.89 -2.39 -0.02 1.15 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 1.07 7.72 -2.39 -0.02 1.05 16 38 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -65.00 325.90 2.31 -62.68 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.35 Total: 26.47 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 4.70 Total: 5.32 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -5.56 Total: -109.09 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: 0.80 Total: -29.51 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -65.00 2.31 -62.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135516110.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.117 kcal (2) G-P(sol) polarization free energy of solvation -64.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds