Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48495 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47308 * 300.00705 * 3 2 1 6 6 H 1.48505 * 109.46987 * 60.00537 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00124 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.65171 * 359.96285 * 9 7 2 11 11 C 1.54909 * 104.83300 * 204.16325 * 10 9 7 12 12 C 1.55158 * 101.58166 * 322.98698 * 11 10 9 13 13 C 1.52994 * 110.87170 * 277.07027 * 12 11 10 14 14 O 1.42900 * 109.47252 * 177.45422 * 13 12 11 15 15 C 1.53001 * 110.72052 * 153.86542 * 12 11 10 16 16 C 1.50696 * 109.46985 * 185.02367 * 15 12 11 17 17 C 1.38248 * 119.97128 * 89.99984 * 16 15 12 18 18 C 1.38196 * 120.02483 * 179.97438 * 17 16 15 19 19 C 1.38458 * 119.97492 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02786 * 179.97438 * 19 18 17 21 21 C 1.38465 * 119.94675 * 0.24873 * 19 18 17 22 22 C 1.38197 * 119.97511 * 359.47283 * 21 19 18 23 23 C 1.47017 * 125.64521 * 179.97438 * 9 7 2 24 24 H 0.97005 * 120.00534 * 359.97438 * 1 2 3 25 25 H 1.09004 * 110.36405 * 323.00017 * 10 9 7 26 26 H 1.09004 * 110.36764 * 85.32122 * 10 9 7 27 27 H 1.09001 * 111.00171 * 204.91462 * 11 10 9 28 28 H 1.08996 * 111.00414 * 81.06381 * 11 10 9 29 29 H 1.09002 * 109.47569 * 297.45145 * 13 12 11 30 30 H 1.09003 * 109.47398 * 57.45250 * 13 12 11 31 31 H 0.96700 * 114.00588 * 179.97438 * 14 13 12 32 32 H 1.09000 * 109.46964 * 65.02609 * 15 12 11 33 33 H 1.08999 * 109.46911 * 305.02929 * 15 12 11 34 34 H 1.08002 * 119.98915 * 359.97438 * 17 16 15 35 35 H 1.07995 * 120.01604 * 180.02562 * 18 17 16 36 36 H 1.08007 * 120.01064 * 179.75151 * 21 19 18 37 37 H 1.07994 * 119.98821 * 180.29814 * 22 21 19 38 38 H 1.08999 * 109.88313 * 59.49357 * 23 9 7 39 39 H 1.09006 * 109.88734 * 298.32598 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0008 11 6 -0.4010 -3.9322 0.6132 12 6 0.7785 -4.7524 0.0272 13 6 0.4537 -5.2411 -1.3857 14 8 1.5801 -5.9407 -1.9185 15 6 1.1241 -5.9311 0.9395 16 6 2.3476 -6.6340 0.4103 17 6 3.6052 -6.2404 0.8284 18 6 4.7279 -6.8845 0.3442 19 6 4.5929 -7.9240 -0.5604 20 9 5.6898 -8.5541 -1.0348 21 6 3.3331 -8.3135 -0.9828 22 6 2.2115 -7.6717 -0.4928 23 6 1.9318 -3.7274 -0.0016 24 1 -0.4851 0.8400 0.0004 25 1 -0.5987 -1.7587 0.6166 26 1 -0.5282 -2.4870 -1.0173 27 1 -1.3587 -4.3327 0.2807 28 1 -0.3504 -3.8978 1.7015 29 1 -0.4060 -5.9102 -1.3502 30 1 0.2229 -4.3864 -2.0217 31 1 1.4450 -6.2800 -2.8138 32 1 0.2869 -6.6286 0.9648 33 1 1.3225 -5.5650 1.9468 34 1 3.7103 -5.4293 1.5337 35 1 5.7102 -6.5773 0.6713 36 1 3.2268 -9.1216 -1.6915 37 1 1.2286 -7.9786 -0.8185 38 1 2.5594 -3.8509 0.8810 39 1 2.5271 -3.8642 -0.9044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288779967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = -41.846270 kcal Electronic energy + Delta-G solvation = -22438.799017 eV Core-core repulsion = 19068.594302 eV Total energy + Delta-G solvation = -3370.204716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.69145 -39.67675 -37.81058 -35.78599 -33.49027 -31.57532 -30.87448 -29.69445 -27.95626 -25.72018 -25.46187 -23.49325 -22.76162 -21.25643 -20.13449 -18.49003 -17.41810 -17.18023 -16.61293 -16.11709 -15.43535 -15.39540 -14.85029 -14.64206 -14.48535 -13.77906 -13.62269 -13.29340 -13.17378 -12.61988 -12.39370 -12.25691 -12.16222 -11.81128 -11.56916 -11.40063 -10.99355 -10.91513 -10.75598 -10.63241 -10.18807 -10.05579 -9.92323 -9.75394 -9.56510 -9.50816 -8.69833 -8.62548 -8.04344 -6.78289 -5.63284 -3.03587 1.44155 1.55279 3.40680 3.46704 3.48926 3.87273 4.49457 4.50612 4.55652 4.92322 4.98189 5.09561 5.21631 5.35398 5.47136 5.52614 5.54483 5.58055 5.73650 5.77940 5.91355 6.02233 6.05938 6.19149 6.21752 6.29069 6.35106 6.39577 6.52437 6.57635 6.65563 6.88876 6.91704 6.99621 7.18304 7.50257 7.66445 7.85329 7.90231 8.38649 9.25408 9.86760 10.51998 11.40934 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.004934 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.249185 B = 5673.315616 C = 6350.240872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.152 3.848 11 C -0.136 4.136 12 C -0.064 4.064 13 C 0.092 3.908 14 O -0.553 6.553 15 C -0.062 4.062 16 C -0.065 4.065 17 C -0.083 4.083 18 C -0.161 4.161 19 C 0.084 3.916 20 F -0.151 7.151 21 C -0.167 4.167 22 C -0.032 4.032 23 C 0.153 3.847 24 H 0.250 0.750 25 H 0.106 0.894 26 H 0.009 0.991 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.363 0.637 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.021 0.979 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -16.221 -0.418 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.345 4.345 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.065 4.065 13 C 0.014 3.986 14 O -0.357 6.357 15 C -0.100 4.100 16 C -0.066 4.066 17 C -0.101 4.101 18 C -0.180 4.180 19 C 0.065 3.935 20 F -0.130 7.130 21 C -0.186 4.186 22 C -0.050 4.050 23 C 0.027 3.973 24 H 0.061 0.939 25 H 0.124 0.876 26 H 0.027 0.973 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.209 0.791 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.039 0.961 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.417 -15.852 0.146 15.916 hybrid contribution 0.426 0.727 -0.875 1.215 sum 1.843 -15.125 -0.729 15.254 Atomic orbital electron populations 1.69799 1.04853 1.24511 1.58195 1.24755 0.95701 0.97613 1.02744 0.86026 0.78712 0.83766 0.77212 1.20564 1.21838 1.21782 1.19130 0.90521 0.82540 1.42309 0.90566 1.44534 1.01857 0.99963 1.86795 1.21919 0.84999 0.92421 0.97949 1.23096 0.95353 0.98715 1.00261 1.21591 0.98074 0.94096 0.92701 1.22083 0.87260 0.94583 0.94650 1.86816 1.40333 1.74961 1.33592 1.20584 0.94616 0.96147 0.98663 1.19742 0.94709 0.95259 0.96846 1.20918 0.91337 0.98410 0.99457 1.20977 1.00013 0.97264 0.99756 1.17657 0.82706 0.95014 0.98123 1.91447 1.52874 1.81356 1.87304 1.20921 0.91259 1.02968 1.03486 1.20528 0.97375 0.93407 0.93702 1.21304 0.93078 0.84750 0.98144 0.93894 0.87640 0.97289 0.92343 0.91499 0.94572 0.93147 0.79096 0.91413 0.90890 0.85461 0.85611 0.85822 0.86102 0.96092 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.09 55.49 0.56 -26.31 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.22 -6.08 10.27 -15.06 -0.15 -6.24 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.45 3.39 -170.07 -0.58 -16.02 16 10 C 0.15 3.61 5.58 -2.53 -0.01 3.59 16 11 C -0.14 -2.43 6.03 -24.58 -0.15 -2.58 16 12 C -0.06 -1.06 0.57 -152.67 -0.09 -1.15 16 13 C 0.09 1.35 5.79 37.15 0.22 1.56 16 14 O -0.55 -7.44 7.96 -35.23 -0.28 -7.72 16 15 C -0.06 -0.86 4.37 -27.88 -0.12 -0.98 16 16 C -0.07 -0.90 3.83 -104.62 -0.40 -1.30 16 17 C -0.08 -1.19 8.64 -39.59 -0.34 -1.53 16 18 C -0.16 -2.24 10.03 -39.52 -0.40 -2.63 16 19 C 0.08 1.17 7.30 -39.42 -0.29 0.88 16 20 F -0.15 -2.15 17.27 2.25 0.04 -2.12 16 21 C -0.17 -2.07 10.03 -39.51 -0.40 -2.47 16 22 C -0.03 -0.39 6.46 -39.59 -0.26 -0.64 16 23 C 0.15 3.21 5.40 -3.06 -0.02 3.20 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.11 2.84 5.87 -51.93 -0.31 2.53 16 26 H 0.01 0.23 7.77 -51.93 -0.40 -0.17 16 27 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 28 H 0.07 1.18 8.04 -51.93 -0.42 0.77 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.86 7.52 -51.93 -0.39 0.47 16 31 H 0.36 3.47 9.12 45.56 0.42 3.89 16 32 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.13 1.79 7.12 -52.49 -0.37 1.41 16 35 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.12 1.25 7.81 -52.49 -0.41 0.84 16 38 H 0.02 0.44 6.31 -51.93 -0.33 0.12 16 39 H 0.03 0.66 7.40 -51.93 -0.38 0.28 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -30.96 310.93 -7.77 -38.73 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.67 Total: 2.29 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.50 Total: -10.75 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.02 Total: -42.33 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.28 Total: -7.72 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.96 -7.77 -38.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288779967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.117 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds