Wall clock time and date at job start Wed Apr 15 2020 11:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99787 * 2 1 4 4 H 1.48495 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47308 * 300.00705 * 3 2 1 6 6 H 1.48505 * 109.46987 * 60.00537 * 3 2 1 7 7 C 1.38811 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00124 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47419 * 125.65171 * 359.96285 * 9 7 2 11 11 C 1.54909 * 104.83300 * 204.16325 * 10 9 7 12 12 C 1.55158 * 101.58166 * 322.98698 * 11 10 9 13 13 C 1.52994 * 110.87170 * 277.07027 * 12 11 10 14 14 O 1.42900 * 109.47252 * 177.45422 * 13 12 11 15 15 C 1.53001 * 110.72052 * 153.86542 * 12 11 10 16 16 C 1.50696 * 109.46985 * 185.02367 * 15 12 11 17 17 C 1.38248 * 119.97128 * 89.99984 * 16 15 12 18 18 C 1.38196 * 120.02483 * 179.97438 * 17 16 15 19 19 C 1.38458 * 119.97492 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02786 * 179.97438 * 19 18 17 21 21 C 1.38465 * 119.94675 * 0.24873 * 19 18 17 22 22 C 1.38197 * 119.97511 * 359.47283 * 21 19 18 23 23 C 1.47017 * 125.64521 * 179.97438 * 9 7 2 24 24 H 0.97005 * 120.00534 * 359.97438 * 1 2 3 25 25 H 1.09004 * 110.36405 * 323.00017 * 10 9 7 26 26 H 1.09004 * 110.36764 * 85.32122 * 10 9 7 27 27 H 1.09001 * 111.00171 * 204.91462 * 11 10 9 28 28 H 1.08996 * 111.00414 * 81.06381 * 11 10 9 29 29 H 1.09002 * 109.47569 * 297.45145 * 13 12 11 30 30 H 1.09003 * 109.47398 * 57.45250 * 13 12 11 31 31 H 0.96700 * 114.00588 * 179.97438 * 14 13 12 32 32 H 1.09000 * 109.46964 * 65.02609 * 15 12 11 33 33 H 1.08999 * 109.46911 * 305.02929 * 15 12 11 34 34 H 1.08002 * 119.98915 * 359.97438 * 17 16 15 35 35 H 1.07995 * 120.01604 * 180.02562 * 18 17 16 36 36 H 1.08007 * 120.01064 * 179.75151 * 21 19 18 37 37 H 1.07994 * 119.98821 * 180.29814 * 22 21 19 38 38 H 1.08999 * 109.88313 * 59.49357 * 23 9 7 39 39 H 1.09006 * 109.88734 * 298.32598 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1415 -2.5332 0.0008 11 6 -0.4010 -3.9322 0.6132 12 6 0.7785 -4.7524 0.0272 13 6 0.4537 -5.2411 -1.3857 14 8 1.5801 -5.9407 -1.9185 15 6 1.1241 -5.9311 0.9395 16 6 2.3476 -6.6340 0.4103 17 6 3.6052 -6.2404 0.8284 18 6 4.7279 -6.8845 0.3442 19 6 4.5929 -7.9240 -0.5604 20 9 5.6898 -8.5541 -1.0348 21 6 3.3331 -8.3135 -0.9828 22 6 2.2115 -7.6717 -0.4928 23 6 1.9318 -3.7274 -0.0016 24 1 -0.4851 0.8400 0.0004 25 1 -0.5987 -1.7587 0.6166 26 1 -0.5282 -2.4870 -1.0173 27 1 -1.3587 -4.3327 0.2807 28 1 -0.3504 -3.8978 1.7015 29 1 -0.4060 -5.9102 -1.3502 30 1 0.2229 -4.3864 -2.0217 31 1 1.4450 -6.2800 -2.8138 32 1 0.2869 -6.6286 0.9648 33 1 1.3225 -5.5650 1.9468 34 1 3.7103 -5.4293 1.5337 35 1 5.7102 -6.5773 0.6713 36 1 3.2268 -9.1216 -1.6915 37 1 1.2286 -7.9786 -0.8185 38 1 2.5594 -3.8509 0.8810 39 1 2.5271 -3.8642 -0.9044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288779967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:43 Heat of formation + Delta-G solvation = -60.864597 kcal Electronic energy + Delta-G solvation = -22439.623714 eV Core-core repulsion = 19068.594302 eV Total energy + Delta-G solvation = -3371.029412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.76138 -40.89144 -39.09361 -37.07312 -35.11212 -33.16305 -31.87399 -31.36408 -29.46963 -27.37694 -26.73238 -25.11573 -23.78273 -22.49780 -21.85591 -19.86092 -18.85116 -18.46605 -18.02998 -17.23107 -16.82112 -16.46975 -16.45172 -16.04736 -15.86529 -15.38037 -14.80378 -14.38776 -14.30881 -14.07069 -13.95753 -13.63093 -13.50250 -13.28007 -12.95162 -12.90083 -12.77961 -12.60417 -12.16912 -11.98286 -11.76536 -11.68529 -11.55187 -11.27543 -11.18146 -10.78588 -10.67882 -9.69816 -9.10547 -8.84432 -7.77182 -5.20022 0.40359 0.55511 1.44761 1.45078 1.55603 2.49104 2.84840 3.31462 3.40937 3.48576 3.77299 3.82935 3.92857 4.05907 4.12814 4.22050 4.31630 4.49837 4.54364 4.58235 4.68382 4.75194 4.77398 4.90778 5.02941 5.03539 5.15919 5.21674 5.28779 5.33496 5.36833 5.45738 5.50382 5.51235 5.68332 5.84808 5.86894 6.18270 6.33700 7.03273 7.13704 7.81795 8.45148 9.24431 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.004934 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.249185 B = 5673.315616 C = 6350.240872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.627 5.627 10 C 0.153 3.847 11 C -0.120 4.120 12 C -0.054 4.054 13 C 0.100 3.900 14 O -0.561 6.561 15 C -0.055 4.055 16 C -0.073 4.073 17 C -0.100 4.100 18 C -0.174 4.174 19 C 0.067 3.933 20 F -0.157 7.157 21 C -0.163 4.163 22 C -0.023 4.023 23 C 0.155 3.845 24 H 0.247 0.753 25 H 0.070 0.930 26 H -0.015 1.015 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.018 0.982 31 H 0.383 0.617 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.017 0.983 39 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 -18.359 -0.682 18.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.353 5.353 10 C 0.028 3.972 11 C -0.158 4.158 12 C -0.054 4.054 13 C 0.022 3.978 14 O -0.368 6.368 15 C -0.093 4.093 16 C -0.074 4.074 17 C -0.118 4.118 18 C -0.193 4.193 19 C 0.048 3.952 20 F -0.136 7.136 21 C -0.181 4.181 22 C -0.041 4.041 23 C 0.030 3.970 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.003 0.997 27 H 0.111 0.889 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.232 0.768 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.035 0.965 39 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 0.725 -18.024 -0.128 18.039 hybrid contribution 0.698 1.380 -0.834 1.757 sum 1.423 -16.643 -0.961 16.732 Atomic orbital electron populations 1.70050 1.05995 1.24823 1.58841 1.25540 0.96626 1.00635 1.02890 0.85053 0.77959 0.79706 0.76899 1.19618 1.21877 1.21492 1.19424 0.90730 0.84182 1.42249 0.91064 1.44849 1.02926 1.00924 1.86581 1.21725 0.83910 0.95207 0.96322 1.22938 0.97619 0.95097 1.00179 1.21525 0.95063 0.93832 0.95005 1.21920 0.88789 0.94499 0.92555 1.86764 1.40164 1.74643 1.35239 1.20539 0.95867 0.95385 0.97499 1.19832 0.94171 0.95942 0.97425 1.20974 0.92162 0.98674 1.00017 1.21092 1.00296 0.97700 1.00222 1.17913 0.83358 0.95324 0.98591 1.91430 1.53313 1.81432 1.87386 1.21219 0.90457 1.03169 1.03274 1.20800 0.98596 0.92256 0.92438 1.21381 0.94655 0.84241 0.96721 0.94357 0.91218 0.99676 0.88946 0.91123 0.90540 0.96368 0.76797 0.87994 0.91300 0.86346 0.85255 0.83380 0.83151 0.96468 0.97402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.69 10.09 21.65 0.22 -56.47 16 2 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 3 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.69 10.27 84.03 0.86 -12.82 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.63 -32.83 3.39 -691.99 -2.35 -35.18 16 10 C 0.15 7.43 5.58 86.86 0.48 7.91 16 11 C -0.12 -4.09 6.03 31.99 0.19 -3.90 16 12 C -0.05 -1.67 0.57 -50.99 -0.03 -1.69 16 13 C 0.10 2.64 5.79 71.98 0.42 3.06 16 14 O -0.56 -13.34 7.96 -148.98 -1.19 -14.53 16 15 C -0.06 -1.35 4.37 29.85 0.13 -1.22 16 16 C -0.07 -1.82 3.83 -19.86 -0.08 -1.90 16 17 C -0.10 -2.79 8.64 22.26 0.19 -2.60 16 18 C -0.17 -4.76 10.03 22.31 0.22 -4.54 16 19 C 0.07 1.76 7.30 22.38 0.16 1.93 16 20 F -0.16 -4.30 17.27 44.97 0.78 -3.52 16 21 C -0.16 -3.49 10.03 22.31 0.22 -3.27 16 22 C -0.02 -0.47 6.46 22.26 0.14 -0.32 16 23 C 0.15 6.56 5.40 86.73 0.47 7.03 16 24 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 25 H 0.07 3.89 5.87 -2.38 -0.01 3.87 16 26 H -0.01 -0.77 7.77 -2.38 -0.02 -0.78 16 27 H 0.09 2.55 8.04 -2.39 -0.02 2.53 16 28 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.02 0.60 7.52 -2.39 -0.02 0.58 16 31 H 0.38 5.90 9.12 -74.06 -0.68 5.23 16 32 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.07 1.74 8.07 -2.39 -0.02 1.73 16 34 H 0.12 3.40 7.12 -2.91 -0.02 3.38 16 35 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.15 2.21 7.81 -2.91 -0.02 2.19 16 38 H 0.02 0.74 6.31 -2.39 -0.02 0.73 16 39 H 0.01 0.37 7.40 -2.38 -0.02 0.35 16 Total: -1.00 -69.58 310.93 3.73 -65.84 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.38 Total: 10.84 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 3.86 Total: -15.59 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -2.13 Total: -91.65 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -1.19 Total: -14.53 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -69.58 3.73 -65.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288779967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.977 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds