Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00537 * 3 2 1 5 5 H 1.48501 * 109.47073 * 30.00685 * 3 2 1 6 6 H 1.48500 * 109.47212 * 150.00827 * 3 2 1 7 7 C 1.38813 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00470 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64504 * 0.04484 * 9 7 2 11 11 C 1.55386 * 104.87177 * 204.09556 * 10 9 7 12 12 C 1.55156 * 101.36833 * 323.01894 * 11 10 9 13 13 C 1.52997 * 110.72000 * 153.94678 * 12 11 10 14 14 O 1.42897 * 109.47072 * 182.43771 * 13 12 11 15 15 C 1.53000 * 110.71798 * 277.04255 * 12 11 10 16 16 C 1.50706 * 109.46873 * 177.55859 * 15 12 11 17 17 C 1.38249 * 119.97326 * 270.27456 * 16 15 12 18 18 C 1.38194 * 120.02362 * 180.23554 * 17 16 15 19 19 C 1.38460 * 119.97497 * 359.48860 * 18 17 16 20 20 F 1.35104 * 120.02799 * 180.23537 * 19 18 17 21 21 C 1.38467 * 119.94915 * 0.26132 * 19 18 17 22 22 C 1.38197 * 119.97169 * 359.97438 * 21 19 18 23 23 C 1.47021 * 125.65230 * 180.02562 * 9 7 2 24 24 H 0.96991 * 120.00317 * 359.97438 * 1 2 3 25 25 H 1.08991 * 110.36767 * 322.93062 * 10 9 7 26 26 H 1.08999 * 110.36509 * 85.14986 * 10 9 7 27 27 H 1.09002 * 111.19026 * 204.98376 * 11 10 9 28 28 H 1.08998 * 111.02779 * 80.98748 * 11 10 9 29 29 H 1.08997 * 109.47656 * 302.43893 * 13 12 11 30 30 H 1.09005 * 109.47162 * 62.44255 * 13 12 11 31 31 H 0.96703 * 114.00205 * 179.97438 * 14 13 12 32 32 H 1.09000 * 109.47499 * 57.56097 * 15 12 11 33 33 H 1.08995 * 109.47400 * 297.55547 * 15 12 11 34 34 H 1.07998 * 119.98556 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.01531 * 179.77412 * 18 17 16 36 36 H 1.07998 * 120.01335 * 180.02562 * 21 19 18 37 37 H 1.08004 * 119.98594 * 179.97438 * 22 21 19 38 38 H 1.09006 * 109.87714 * 59.56043 * 23 9 7 39 39 H 1.08992 * 109.88451 * 298.39600 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4036 -3.9366 0.6123 12 6 0.7786 -4.7524 0.0255 13 6 1.1249 -5.9337 0.9341 14 8 2.2509 -6.6320 0.3991 15 6 0.4525 -5.2372 -1.3886 16 6 1.6399 -5.9734 -1.9534 17 6 2.6098 -5.2835 -2.6568 18 6 3.6966 -5.9584 -3.1794 19 6 3.8194 -7.3244 -2.9893 20 9 4.8838 -7.9845 -3.4957 21 6 2.8500 -8.0135 -2.2802 22 6 1.7616 -7.3373 -1.7627 23 6 1.9319 -3.7275 -0.0005 24 1 -0.4850 0.8399 0.0004 25 1 -0.5994 -1.7591 0.6147 26 1 -0.5271 -2.4847 -1.0193 27 1 -1.3599 -4.3398 0.2792 28 1 -0.3532 -3.9035 1.7007 29 1 1.3656 -5.5664 1.9317 30 1 0.2719 -6.6099 0.9919 31 1 2.5271 -7.3948 0.9254 32 1 0.2211 -4.3808 -2.0219 33 1 -0.4071 -5.9064 -1.3541 34 1 2.5158 -4.2174 -2.8014 35 1 4.4523 -5.4198 -3.7320 36 1 2.9450 -9.0789 -2.1310 37 1 1.0052 -7.8746 -1.2100 38 1 2.5579 -3.8510 0.8833 39 1 2.5288 -3.8642 -0.9022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288779969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = -40.026625 kcal Electronic energy + Delta-G solvation = -22518.405925 eV Core-core repulsion = 19148.280115 eV Total energy + Delta-G solvation = -3370.125810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.65486 -39.70091 -37.70454 -35.95251 -33.37379 -31.43308 -30.83456 -29.75547 -28.05281 -25.79742 -25.44964 -23.27598 -22.69710 -21.27050 -20.20121 -18.48830 -17.37283 -17.21100 -16.55427 -16.02776 -15.63338 -15.36711 -14.78233 -14.72604 -14.14344 -13.83908 -13.66538 -13.20808 -13.12262 -12.97117 -12.51431 -12.21203 -11.99288 -11.71572 -11.45029 -11.21521 -11.00544 -10.83312 -10.78217 -10.57523 -10.25423 -10.08696 -9.91896 -9.77942 -9.60817 -9.49630 -8.67365 -8.58617 -8.00439 -6.77595 -5.63114 -3.03355 1.49579 1.60382 3.41214 3.46603 3.48183 3.93048 4.50665 4.52131 4.54562 4.97163 5.03244 5.13619 5.20272 5.35224 5.47927 5.53422 5.55853 5.62348 5.69131 5.81761 5.90051 5.98008 6.12224 6.21742 6.28561 6.33950 6.40655 6.45079 6.55865 6.59692 6.65354 6.91548 6.94413 7.01391 7.24190 7.52114 7.66221 7.81836 7.87427 8.38910 9.25590 9.86826 10.52300 11.40975 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.005219 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.417006 B = 5363.385194 C = 6146.117220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.154 3.846 11 C -0.136 4.136 12 C -0.064 4.064 13 C 0.090 3.910 14 O -0.550 6.550 15 C -0.061 4.061 16 C -0.062 4.062 17 C -0.079 4.079 18 C -0.162 4.162 19 C 0.084 3.916 20 F -0.152 7.152 21 C -0.170 4.170 22 C -0.034 4.034 23 C 0.148 3.852 24 H 0.251 0.749 25 H 0.105 0.895 26 H 0.012 0.988 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.362 0.638 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.019 0.981 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -15.845 -1.470 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.346 4.346 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.029 3.971 11 C -0.175 4.175 12 C -0.065 4.065 13 C 0.012 3.988 14 O -0.355 6.355 15 C -0.099 4.099 16 C -0.063 4.063 17 C -0.097 4.097 18 C -0.181 4.181 19 C 0.065 3.935 20 F -0.131 7.131 21 C -0.189 4.189 22 C -0.052 4.052 23 C 0.023 3.977 24 H 0.062 0.938 25 H 0.123 0.877 26 H 0.030 0.970 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.208 0.792 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.037 0.963 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.736 -15.161 -1.939 15.303 hybrid contribution 0.801 0.327 0.451 0.975 sum 1.537 -14.834 -1.489 14.988 Atomic orbital electron populations 1.69782 1.04839 1.24647 1.58028 1.24751 0.95691 0.97590 1.02698 0.86105 0.78555 0.83512 0.77556 1.21690 1.21710 1.20767 1.19075 0.90478 0.82538 1.42546 0.90639 1.44521 1.01860 0.99900 1.86844 1.21980 0.84929 0.92064 0.98087 1.23180 0.95356 0.98955 0.99971 1.21590 0.97802 0.93569 0.93495 1.22199 0.87712 0.92946 0.95962 1.86906 1.50113 1.46287 1.52174 1.20531 0.94339 0.99294 0.95710 1.19734 0.96596 0.93472 0.96461 1.20990 0.92772 1.00059 0.95865 1.20994 1.00505 0.92536 1.04071 1.17652 0.85789 0.90685 0.99412 1.91442 1.54683 1.81222 1.85710 1.20884 0.95683 1.00015 1.02289 1.20509 0.96286 0.93550 0.94872 1.21391 0.93087 0.84756 0.98498 0.93823 0.87720 0.96967 0.92124 0.92012 0.93894 0.94326 0.79237 0.90251 0.91676 0.85047 0.85635 0.85919 0.86277 0.96325 0.94824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.07 10.27 -15.06 -0.15 -6.22 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.27 3.40 -169.77 -0.58 -15.85 16 10 C 0.15 3.63 5.58 -2.27 -0.01 3.62 16 11 C -0.14 -2.44 6.06 -24.32 -0.15 -2.58 16 12 C -0.06 -1.06 0.57 -152.68 -0.09 -1.14 16 13 C 0.09 1.19 5.72 37.16 0.21 1.41 16 14 O -0.55 -6.89 8.36 -35.23 -0.29 -7.19 16 15 C -0.06 -0.93 4.44 -27.88 -0.12 -1.05 16 16 C -0.06 -0.91 3.75 -104.61 -0.39 -1.30 16 17 C -0.08 -1.23 7.98 -39.59 -0.32 -1.55 16 18 C -0.16 -2.39 10.03 -39.52 -0.40 -2.78 16 19 C 0.08 1.20 7.30 -39.42 -0.29 0.91 16 20 F -0.15 -2.21 17.27 2.25 0.04 -2.17 16 21 C -0.17 -2.13 10.03 -39.51 -0.40 -2.53 16 22 C -0.03 -0.42 6.42 -39.59 -0.25 -0.68 16 23 C 0.15 3.11 6.06 -3.07 -0.02 3.09 16 24 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.11 2.81 5.87 -51.93 -0.31 2.50 16 26 H 0.01 0.31 7.76 -51.93 -0.40 -0.10 16 27 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 28 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.36 3.05 9.12 45.56 0.42 3.46 16 32 H 0.08 1.36 7.45 -51.93 -0.39 0.97 16 33 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.13 2.19 7.29 -52.49 -0.38 1.81 16 35 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.25 7.91 -52.48 -0.42 0.83 16 38 H 0.02 0.42 7.80 -51.93 -0.41 0.01 16 39 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 LS Contribution 310.36 15.07 4.68 4.68 Total: -1.00 -30.47 310.36 -7.71 -38.18 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.62 Total: 2.62 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -2.47 Total: -11.25 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.02 Total: -41.98 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.29 Total: -7.19 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.47 -7.71 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288779969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.842 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds