Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48499 * 109.47251 * 270.00537 * 3 2 1 5 5 H 1.48501 * 109.47073 * 30.00685 * 3 2 1 6 6 H 1.48500 * 109.47212 * 150.00827 * 3 2 1 7 7 C 1.38813 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00470 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64504 * 0.04484 * 9 7 2 11 11 C 1.55386 * 104.87177 * 204.09556 * 10 9 7 12 12 C 1.55156 * 101.36833 * 323.01894 * 11 10 9 13 13 C 1.52997 * 110.72000 * 153.94678 * 12 11 10 14 14 O 1.42897 * 109.47072 * 182.43771 * 13 12 11 15 15 C 1.53000 * 110.71798 * 277.04255 * 12 11 10 16 16 C 1.50706 * 109.46873 * 177.55859 * 15 12 11 17 17 C 1.38249 * 119.97326 * 270.27456 * 16 15 12 18 18 C 1.38194 * 120.02362 * 180.23554 * 17 16 15 19 19 C 1.38460 * 119.97497 * 359.48860 * 18 17 16 20 20 F 1.35104 * 120.02799 * 180.23537 * 19 18 17 21 21 C 1.38467 * 119.94915 * 0.26132 * 19 18 17 22 22 C 1.38197 * 119.97169 * 359.97438 * 21 19 18 23 23 C 1.47021 * 125.65230 * 180.02562 * 9 7 2 24 24 H 0.96991 * 120.00317 * 359.97438 * 1 2 3 25 25 H 1.08991 * 110.36767 * 322.93062 * 10 9 7 26 26 H 1.08999 * 110.36509 * 85.14986 * 10 9 7 27 27 H 1.09002 * 111.19026 * 204.98376 * 11 10 9 28 28 H 1.08998 * 111.02779 * 80.98748 * 11 10 9 29 29 H 1.08997 * 109.47656 * 302.43893 * 13 12 11 30 30 H 1.09005 * 109.47162 * 62.44255 * 13 12 11 31 31 H 0.96703 * 114.00205 * 179.97438 * 14 13 12 32 32 H 1.09000 * 109.47499 * 57.56097 * 15 12 11 33 33 H 1.08995 * 109.47400 * 297.55547 * 15 12 11 34 34 H 1.07998 * 119.98556 * 359.97438 * 17 16 15 35 35 H 1.08002 * 120.01531 * 179.77412 * 18 17 16 36 36 H 1.07998 * 120.01335 * 180.02562 * 21 19 18 37 37 H 1.08004 * 119.98594 * 179.97438 * 22 21 19 38 38 H 1.09006 * 109.87714 * 59.56043 * 23 9 7 39 39 H 1.08992 * 109.88451 * 298.39600 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 -0.1415 -2.5332 -0.0009 11 6 -0.4036 -3.9366 0.6123 12 6 0.7786 -4.7524 0.0255 13 6 1.1249 -5.9337 0.9341 14 8 2.2509 -6.6320 0.3991 15 6 0.4525 -5.2372 -1.3886 16 6 1.6399 -5.9734 -1.9534 17 6 2.6098 -5.2835 -2.6568 18 6 3.6966 -5.9584 -3.1794 19 6 3.8194 -7.3244 -2.9893 20 9 4.8838 -7.9845 -3.4957 21 6 2.8500 -8.0135 -2.2802 22 6 1.7616 -7.3373 -1.7627 23 6 1.9319 -3.7275 -0.0005 24 1 -0.4850 0.8399 0.0004 25 1 -0.5994 -1.7591 0.6147 26 1 -0.5271 -2.4847 -1.0193 27 1 -1.3599 -4.3398 0.2792 28 1 -0.3532 -3.9035 1.7007 29 1 1.3656 -5.5664 1.9317 30 1 0.2719 -6.6099 0.9919 31 1 2.5271 -7.3948 0.9254 32 1 0.2211 -4.3808 -2.0219 33 1 -0.4071 -5.9064 -1.3541 34 1 2.5158 -4.2174 -2.8014 35 1 4.4523 -5.4198 -3.7320 36 1 2.9450 -9.0789 -2.1310 37 1 1.0052 -7.8746 -1.2100 38 1 2.5579 -3.8510 0.8833 39 1 2.5288 -3.8642 -0.9022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288779969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = -58.822818 kcal Electronic energy + Delta-G solvation = -22519.220989 eV Core-core repulsion = 19148.280115 eV Total energy + Delta-G solvation = -3370.940874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.76326 -40.94402 -39.01472 -37.15111 -35.05075 -33.01231 -31.90511 -31.39398 -29.60045 -27.38289 -26.82231 -24.87226 -23.78672 -22.43735 -22.02316 -19.85642 -18.85357 -18.47562 -17.88868 -17.13985 -17.02830 -16.58451 -16.45889 -15.94602 -15.69396 -15.26501 -14.99035 -14.53128 -14.25251 -14.11883 -13.96766 -13.74476 -13.46712 -13.16437 -13.01327 -12.81043 -12.65462 -12.47297 -12.22951 -12.00231 -11.77020 -11.69416 -11.60645 -11.26427 -11.16842 -10.74354 -10.69577 -9.69730 -9.11045 -8.82291 -7.76524 -5.19051 0.39692 0.53894 1.44530 1.45868 1.54641 2.49438 2.84404 3.31279 3.45666 3.47801 3.75472 3.86054 3.91586 4.02605 4.11893 4.22431 4.32002 4.49105 4.54101 4.56934 4.71901 4.76312 4.78851 4.90357 4.99839 5.04989 5.15538 5.23977 5.28003 5.29529 5.35662 5.44783 5.50338 5.51363 5.69857 5.85546 5.87722 6.17516 6.34236 7.10743 7.14281 7.82435 8.46158 9.24917 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.005219 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.417006 B = 5363.385194 C = 6146.117220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.064 4.064 3 Si 0.975 3.025 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.625 5.625 10 C 0.155 3.845 11 C -0.120 4.120 12 C -0.054 4.054 13 C 0.100 3.900 14 O -0.564 6.564 15 C -0.057 4.057 16 C -0.068 4.068 17 C -0.100 4.100 18 C -0.175 4.175 19 C 0.071 3.929 20 F -0.155 7.155 21 C -0.158 4.158 22 C -0.019 4.019 23 C 0.145 3.855 24 H 0.247 0.753 25 H 0.069 0.931 26 H -0.012 1.012 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.384 0.616 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.005 0.995 39 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -18.843 -0.675 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.030 3.970 11 C -0.159 4.159 12 C -0.055 4.055 13 C 0.022 3.978 14 O -0.371 6.371 15 C -0.094 4.094 16 C -0.069 4.069 17 C -0.118 4.118 18 C -0.194 4.194 19 C 0.052 3.948 20 F -0.134 7.134 21 C -0.177 4.177 22 C -0.037 4.037 23 C 0.021 3.979 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.006 0.994 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.234 0.766 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.023 0.977 39 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 0.375 -18.198 -1.137 18.238 hybrid contribution 0.976 1.240 0.165 1.586 sum 1.351 -16.958 -0.972 17.040 Atomic orbital electron populations 1.70038 1.05976 1.24885 1.58755 1.25532 0.96611 1.00601 1.02899 0.85131 0.77641 0.79504 0.77393 1.21529 1.21623 1.19817 1.19377 0.90696 0.84184 1.42378 0.91116 1.44813 1.02876 1.00831 1.86614 1.21776 0.83883 0.94889 0.96429 1.23007 0.97605 0.95386 0.99860 1.21525 0.94848 0.93752 0.95357 1.22006 0.89404 0.92258 0.94131 1.86834 1.50014 1.47384 1.52892 1.20480 0.95917 0.98927 0.94063 1.19754 0.95958 0.94608 0.96547 1.20863 0.94201 0.99018 0.97749 1.21034 1.00469 0.93328 1.04548 1.17852 0.86369 0.90492 1.00063 1.91433 1.54987 1.81114 1.85873 1.21218 0.94541 1.01411 1.00532 1.20782 0.96702 0.92293 0.93932 1.21531 0.94792 0.84337 0.97272 0.94356 0.91322 0.99414 0.88824 0.91593 0.94528 0.90388 0.76614 0.93422 0.88146 0.87833 0.85625 0.82852 0.82743 0.97718 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.78 10.09 21.65 0.22 -56.56 16 2 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 3 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.24 -13.72 10.27 84.03 0.86 -12.86 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.63 -32.79 3.40 -691.05 -2.35 -35.13 16 10 C 0.16 7.55 5.58 87.02 0.49 8.04 16 11 C -0.12 -4.13 6.06 32.15 0.19 -3.93 16 12 C -0.05 -1.69 0.57 -51.00 -0.03 -1.72 16 13 C 0.10 2.24 5.72 71.98 0.41 2.66 16 14 O -0.56 -11.75 8.36 -148.98 -1.25 -12.99 16 15 C -0.06 -1.60 4.44 29.85 0.13 -1.47 16 16 C -0.07 -1.86 3.75 -19.86 -0.07 -1.94 16 17 C -0.10 -3.18 7.98 22.26 0.18 -3.00 16 18 C -0.17 -5.17 10.03 22.31 0.22 -4.95 16 19 C 0.07 1.91 7.30 22.38 0.16 2.07 16 20 F -0.16 -4.27 17.27 44.97 0.78 -3.49 16 21 C -0.16 -3.35 10.03 22.31 0.22 -3.13 16 22 C -0.02 -0.39 6.42 22.26 0.14 -0.25 16 23 C 0.15 6.21 6.06 86.73 0.53 6.73 16 24 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 25 H 0.07 3.84 5.87 -2.39 -0.01 3.83 16 26 H -0.01 -0.63 7.76 -2.39 -0.02 -0.65 16 27 H 0.09 2.61 8.04 -2.39 -0.02 2.59 16 28 H 0.07 2.22 8.05 -2.39 -0.02 2.20 16 29 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 30 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.38 4.48 9.12 -74.06 -0.68 3.81 16 32 H 0.05 1.65 7.45 -2.39 -0.02 1.63 16 33 H 0.10 2.15 8.08 -2.39 -0.02 2.13 16 34 H 0.10 3.77 7.29 -2.91 -0.02 3.75 16 35 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.16 2.16 7.91 -2.91 -0.02 2.14 16 38 H 0.00 0.22 7.80 -2.38 -0.02 0.20 16 39 H 0.03 1.17 4.78 -2.39 -0.01 1.16 16 Total: -1.00 -69.76 310.36 3.72 -66.04 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.38 Total: 10.42 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 3.91 Total: -16.99 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -2.13 Total: -91.70 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.25 Total: -12.99 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -69.76 3.72 -66.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288779969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.219 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds