Wall clock time and date at job start Wed Apr 15 2020 11:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 120.00200 * 2 1 4 4 H 1.48500 * 109.46652 * 269.99702 * 3 2 1 5 5 H 1.48496 * 109.47022 * 29.99597 * 3 2 1 6 6 H 1.48496 * 109.46977 * 149.99963 * 3 2 1 7 7 C 1.38810 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00003 * 197.37220 * 7 2 1 9 9 N 1.36939 * 120.00205 * 17.36980 * 7 2 1 10 10 C 1.46919 * 120.63319 * 207.68472 * 9 7 2 11 11 C 1.53192 * 108.77578 * 233.58302 * 10 9 7 12 12 C 1.53042 * 109.31330 * 305.36781 * 11 10 9 13 13 O 1.42894 * 109.46035 * 301.35215 * 12 11 10 14 14 C 1.53001 * 109.45503 * 181.38402 * 12 11 10 15 15 C 1.50703 * 109.46648 * 184.97148 * 14 12 11 16 16 C 1.38245 * 119.97162 * 90.00076 * 15 14 12 17 17 C 1.38202 * 120.02509 * 179.97438 * 16 15 14 18 18 C 1.38467 * 119.97283 * 0.23183 * 17 16 15 19 19 F 1.35099 * 120.02528 * 179.72661 * 18 17 16 20 20 C 1.38462 * 119.94517 * 359.48986 * 18 17 16 21 21 C 1.38201 * 119.97489 * 0.53358 * 20 18 17 22 22 C 1.53040 * 109.52726 * 61.37014 * 12 11 10 23 23 C 1.46936 * 120.62693 * 27.66206 * 9 7 2 24 24 H 0.97006 * 119.99282 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58797 * 113.79757 * 10 9 7 26 26 H 1.08996 * 109.70682 * 353.44453 * 10 9 7 27 27 H 1.09004 * 109.49991 * 185.41296 * 11 10 9 28 28 H 1.09002 * 109.49396 * 65.32161 * 11 10 9 29 29 H 0.96695 * 114.00292 * 180.02562 * 13 12 11 30 30 H 1.08996 * 109.47443 * 64.97389 * 14 12 11 31 31 H 1.08996 * 109.47542 * 304.97054 * 14 12 11 32 32 H 1.08000 * 119.99254 * 359.97438 * 16 15 14 33 33 H 1.07997 * 120.01372 * 179.97438 * 17 16 15 34 34 H 1.08001 * 120.00944 * 180.24979 * 20 18 17 35 35 H 1.07999 * 119.98260 * 179.74339 * 21 20 18 36 36 H 1.09003 * 109.49553 * 58.57630 * 22 12 11 37 37 H 1.08998 * 109.49307 * 178.67254 * 22 12 11 38 38 H 1.09001 * 109.58493 * 246.20214 * 23 9 7 39 39 H 1.09000 * 109.58231 * 6.62540 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2798 9 7 1.3724 -2.3612 -0.3530 10 6 1.8192 -3.6546 0.1817 11 6 2.0741 -4.6103 -0.9881 12 6 0.8183 -4.6902 -1.8593 13 8 -0.2818 -5.1439 -1.0682 14 6 1.0576 -5.6704 -3.0095 15 6 -0.1314 -5.6580 -3.9354 16 6 -0.1685 -4.7769 -5.0001 17 6 -1.2580 -4.7650 -5.8502 18 6 -2.3149 -5.6327 -5.6324 19 9 -3.3830 -5.6181 -6.4595 20 6 -2.2740 -6.5186 -4.5690 21 6 -1.1836 -6.5283 -3.7200 22 6 0.5009 -3.3050 -2.4274 23 6 0.2277 -2.3348 -1.2739 24 1 -0.4849 0.8402 -0.0004 25 1 1.0468 -4.0686 0.8300 26 1 2.7393 -3.5193 0.7502 27 1 2.3133 -5.6015 -0.6028 28 1 2.9080 -4.2405 -1.5848 29 1 -1.1129 -5.2190 -1.5566 30 1 1.1953 -6.6745 -2.6085 31 1 1.9501 -5.3735 -3.5602 32 1 0.6543 -4.0977 -5.1677 33 1 -1.2870 -4.0764 -6.6816 34 1 -3.0960 -7.1986 -4.4006 35 1 -1.1534 -7.2164 -2.8882 36 1 1.3497 -2.9477 -3.0104 37 1 -0.3798 -3.3672 -3.0666 38 1 -0.6744 -2.6410 -0.7444 39 1 0.0986 -1.3265 -1.6673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335885857.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:49 Heat of formation + Delta-G solvation = -75.255515 kcal Electronic energy + Delta-G solvation = -22254.724695 eV Core-core repulsion = 18883.071245 eV Total energy + Delta-G solvation = -3371.653449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.87386 -41.01746 -39.27276 -36.83293 -34.19717 -33.45432 -32.12262 -31.52225 -31.14021 -28.17981 -25.95309 -24.20953 -23.67918 -23.24053 -21.83756 -20.72721 -18.79310 -18.58869 -17.30250 -17.18498 -16.87280 -16.59776 -16.55004 -16.02188 -15.33550 -15.15209 -14.93668 -14.88227 -14.58541 -14.44705 -14.30003 -13.68569 -13.37116 -13.19479 -12.94506 -12.70274 -12.56730 -12.54989 -12.39904 -12.18037 -12.06505 -11.82447 -11.75449 -11.57232 -10.98869 -10.71163 -10.49181 -10.01456 -9.43165 -8.64324 -7.85241 -5.30422 0.16585 0.30542 1.46976 1.47722 1.57150 2.52250 2.61714 3.27826 3.32601 3.44008 3.69682 3.75716 3.81973 3.99762 4.08786 4.14309 4.25860 4.35105 4.39179 4.55922 4.74299 4.78313 4.90520 4.93978 4.99053 5.01193 5.05733 5.14078 5.19789 5.27271 5.28836 5.35508 5.43018 5.52778 5.62965 5.66441 5.81843 5.96687 6.40541 6.91710 7.17191 7.89963 8.42426 9.20763 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.004694 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.359195 B = 5963.923537 C = 6635.273934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.145 3.855 11 C -0.111 4.111 12 C 0.151 3.849 13 O -0.565 6.565 14 C -0.096 4.096 15 C -0.093 4.093 16 C -0.089 4.089 17 C -0.158 4.158 18 C 0.070 3.930 19 F -0.152 7.152 20 C -0.152 4.152 21 C -0.091 4.091 22 C -0.151 4.151 23 C 0.185 3.815 24 H 0.248 0.752 25 H 0.007 0.993 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.373 0.627 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.063 0.937 37 H 0.067 0.933 38 H -0.011 1.011 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -14.711 -11.341 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.393 4.393 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.019 3.981 11 C -0.150 4.150 12 C 0.111 3.889 13 O -0.372 6.372 14 C -0.134 4.134 15 C -0.093 4.093 16 C -0.107 4.107 17 C -0.177 4.177 18 C 0.051 3.949 19 F -0.130 7.130 20 C -0.170 4.170 21 C -0.109 4.109 22 C -0.190 4.190 23 C 0.060 3.940 24 H 0.057 0.943 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.221 0.779 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.008 0.992 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.077 -14.590 -10.882 18.201 hybrid contribution -0.699 1.351 -0.420 1.578 sum -0.622 -13.239 -11.301 17.418 Atomic orbital electron populations 1.70225 1.06804 1.25678 1.55686 1.25806 0.95978 1.01543 1.01449 0.85270 0.78117 0.79498 0.77618 1.21058 1.22372 1.19183 1.19586 0.93033 0.86170 1.40499 0.91438 1.44328 1.35833 1.02109 1.50976 1.20920 0.96701 0.85995 0.94468 1.21910 0.95616 0.99894 0.97531 1.21001 0.87096 0.91083 0.89743 1.86551 1.20476 1.88979 1.41181 1.21292 0.96208 1.01115 0.94766 1.20037 0.96864 0.96276 0.96098 1.21156 0.98098 0.97886 0.93604 1.21326 0.93760 1.00317 1.02287 1.17996 0.85284 0.99834 0.91753 1.91464 1.54528 1.95984 1.71072 1.21363 1.00962 0.99956 0.94734 1.21201 0.91936 0.98676 0.99084 1.22706 1.01330 0.96708 0.98283 1.20426 0.87688 0.96998 0.88936 0.94274 0.97525 0.93131 0.89800 0.90368 0.77862 0.88593 0.88872 0.84225 0.83875 0.83114 0.82924 0.91809 0.91498 0.99249 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.99 11.19 21.65 0.24 -56.75 16 2 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 3 Si 0.97 45.37 29.59 68.60 2.03 47.40 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.26 -14.71 9.59 84.03 0.81 -13.91 16 8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -31.28 2.99 -699.11 -2.09 -33.37 16 10 C 0.14 6.20 6.27 86.36 0.54 6.74 16 11 C -0.11 -3.55 5.11 30.67 0.16 -3.39 16 12 C 0.15 4.50 0.73 -10.77 -0.01 4.49 16 13 O -0.57 -18.14 11.67 -148.98 -1.74 -19.88 16 14 C -0.10 -2.02 4.67 29.85 0.14 -1.88 16 15 C -0.09 -1.89 4.03 -19.86 -0.08 -1.97 16 16 C -0.09 -1.88 7.81 22.26 0.17 -1.71 16 17 C -0.16 -3.37 10.03 22.32 0.22 -3.15 16 18 C 0.07 1.57 7.30 22.38 0.16 1.73 16 19 F -0.15 -3.65 17.27 44.97 0.78 -2.87 16 20 C -0.15 -2.89 10.03 22.31 0.22 -2.67 16 21 C -0.09 -1.67 8.40 22.26 0.19 -1.48 16 22 C -0.15 -5.39 4.37 30.67 0.13 -5.26 16 23 C 0.19 9.13 5.07 86.36 0.44 9.56 16 24 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 25 H 0.01 0.31 7.81 -2.39 -0.02 0.29 16 26 H 0.05 2.11 7.94 -2.39 -0.02 2.09 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.37 10.11 7.26 -74.06 -0.54 9.57 16 30 H 0.10 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.09 1.77 8.08 -2.39 -0.02 1.75 16 32 H 0.14 2.70 8.03 -2.91 -0.02 2.68 16 33 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.07 2.19 6.04 -2.39 -0.01 2.18 16 38 H -0.01 -0.58 7.81 -2.39 -0.02 -0.60 16 39 H 0.05 2.64 6.04 -2.39 -0.01 2.62 16 Total: -1.00 -67.41 314.23 3.25 -64.16 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.51 Total: 16.78 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 3.52 Total: -15.47 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -1.85 Total: -90.12 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.74 Total: -19.88 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.41 3.25 -64.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335885857.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.093 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds