Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48499 * 109.47051 * 239.99886 * 3 2 1 5 5 H 1.48497 * 109.47273 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46803 * 119.99998 * 3 2 1 7 7 C 1.38815 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99639 * 162.89001 * 7 2 1 9 9 N 1.36935 * 120.00026 * 343.17001 * 7 2 1 10 10 C 1.46930 * 120.62935 * 331.89562 * 9 7 2 11 11 C 1.52762 * 109.00426 * 233.58408 * 10 9 7 12 12 C 1.53037 * 109.38664 * 305.58696 * 11 10 9 13 13 O 1.42896 * 109.45840 * 301.22156 * 12 11 10 14 14 C 1.53000 * 109.46128 * 181.26034 * 12 11 10 15 15 C 1.50700 * 109.47013 * 59.93176 * 14 12 11 16 16 C 1.38217 * 120.01572 * 264.72523 * 15 14 12 17 17 C 1.38219 * 120.02501 * 179.72130 * 16 15 14 18 18 C 1.38267 * 120.05426 * 0.55285 * 17 16 15 19 19 C 1.38174 * 120.02387 * 359.72416 * 18 17 16 20 20 C 1.38445 * 120.01147 * 85.00170 * 15 14 12 21 21 F 1.35101 * 120.02308 * 0.02562 * 20 15 14 22 22 C 1.53042 * 109.53437 * 61.24236 * 12 11 10 23 23 C 1.46919 * 120.62952 * 152.17450 * 9 7 2 24 24 H 0.97003 * 120.00199 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.58738 * 353.41555 * 10 9 7 26 26 H 1.08996 * 109.58558 * 113.84632 * 10 9 7 27 27 H 1.09005 * 109.56252 * 185.54994 * 11 10 9 28 28 H 1.08999 * 109.38709 * 65.51901 * 11 10 9 29 29 H 0.96698 * 114.00176 * 300.06582 * 13 12 11 30 30 H 1.08994 * 109.47109 * 179.97438 * 14 12 11 31 31 H 1.09000 * 109.47488 * 299.93178 * 14 12 11 32 32 H 1.08000 * 119.98425 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.97507 * 180.27621 * 17 16 15 34 34 H 1.08000 * 119.99156 * 179.74209 * 18 17 16 35 35 H 1.08002 * 120.01349 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.49382 * 178.68502 * 22 12 11 37 37 H 1.08998 * 109.50244 * 58.58676 * 22 12 11 38 38 H 1.09000 * 109.58944 * 246.15048 * 23 9 7 39 39 H 1.08994 * 109.59015 * 6.43740 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0543 -1.2227 -0.2757 9 7 1.3695 -2.3628 0.3423 10 6 0.2235 -2.3418 1.2615 11 6 0.4863 -3.3182 2.4066 12 6 0.8067 -4.7001 1.8325 13 8 -0.2892 -5.1492 1.0330 14 6 1.0394 -5.6868 2.9785 15 6 -0.2016 -5.7701 3.8294 16 6 -0.3132 -4.9932 4.9671 17 6 -1.4538 -5.0652 5.7445 18 6 -2.4795 -5.9226 5.3915 19 6 -2.3677 -6.7044 4.2577 20 6 -1.2279 -6.6290 3.4749 21 9 -1.1172 -7.3933 2.3664 22 6 2.0672 -4.6156 0.9686 23 6 1.8188 -3.6534 -0.1973 24 1 -0.4850 0.8401 0.0004 25 1 0.0951 -1.3365 1.6626 26 1 -0.6782 -2.6427 0.7282 27 1 -0.3980 -3.3837 3.0406 28 1 1.3316 -2.9645 2.9969 29 1 -1.1231 -5.2264 1.5165 30 1 1.2672 -6.6712 2.5697 31 1 1.8757 -5.3449 3.5882 32 1 0.4890 -4.3261 5.2460 33 1 -1.5421 -4.4545 6.6310 34 1 -3.3684 -5.9811 6.0020 35 1 -3.1691 -7.3738 3.9819 36 1 2.3081 -5.6048 0.5790 37 1 2.8979 -4.2495 1.5718 38 1 1.0498 -4.0634 -0.8519 39 1 2.7412 -3.5128 -0.7606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365863794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -54.527027 kcal Electronic energy + Delta-G solvation = -22653.704557 eV Core-core repulsion = 19282.949963 eV Total energy + Delta-G solvation = -3370.754595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.84475 -39.69280 -38.14382 -35.12787 -32.92034 -32.02214 -30.59673 -29.90429 -29.74354 -26.98843 -24.30051 -22.84676 -22.33051 -21.84557 -20.58128 -19.12692 -17.53692 -16.85805 -16.42205 -16.16429 -15.84748 -15.05827 -14.85156 -14.33871 -14.28474 -13.85319 -13.43500 -13.29793 -13.17002 -13.04660 -12.88867 -12.42586 -12.13346 -11.84893 -11.40743 -11.35583 -11.11070 -11.06128 -10.81010 -10.65045 -10.37414 -10.28116 -10.03873 -9.74590 -9.44674 -9.24932 -8.90979 -8.58378 -8.39204 -6.56679 -5.71524 -3.13058 1.07727 1.12431 3.41493 3.46910 3.48099 3.50070 4.23124 4.54119 4.58578 4.63421 4.78507 4.87362 5.13010 5.22183 5.29486 5.42630 5.47831 5.52753 5.62701 5.75228 5.83607 5.99000 6.04136 6.08417 6.14778 6.27759 6.35876 6.40001 6.50118 6.55614 6.63324 6.78031 6.84771 6.92663 7.17924 7.46300 7.76340 7.84942 8.15757 8.52625 9.29446 9.93637 10.52062 11.36976 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.005011 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.960187 B = 5586.036364 C = 6083.491712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.179 3.821 11 C -0.165 4.165 12 C 0.148 3.852 13 O -0.545 6.545 14 C -0.111 4.111 15 C -0.109 4.109 16 C -0.084 4.084 17 C -0.129 4.129 18 C -0.099 4.099 19 C -0.154 4.154 20 C 0.093 3.907 21 F -0.131 7.131 22 C -0.117 4.117 23 C 0.150 3.850 24 H 0.253 0.747 25 H 0.084 0.916 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.359 0.641 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -12.766 12.035 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.053 3.947 11 C -0.205 4.205 12 C 0.107 3.893 13 O -0.349 6.349 14 C -0.148 4.148 15 C -0.110 4.110 16 C -0.102 4.102 17 C -0.147 4.147 18 C -0.118 4.118 19 C -0.173 4.173 20 C 0.074 3.926 21 F -0.110 7.110 22 C -0.156 4.156 23 C 0.023 3.977 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.206 0.794 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.434 -12.639 11.491 17.254 hybrid contribution -0.076 0.725 0.387 0.825 sum -2.510 -11.914 11.878 17.010 Atomic orbital electron populations 1.70041 1.05230 1.25405 1.54100 1.25036 0.95252 0.98305 1.01164 0.86389 0.78895 0.83528 0.78075 1.20919 1.21692 1.21140 1.19168 0.92513 0.84899 1.41492 0.91800 1.44013 1.35540 1.01440 1.50405 1.20554 0.89037 0.97336 0.87788 1.22818 1.00538 0.96536 1.00584 1.21073 0.88088 0.91411 0.88727 1.86591 1.19358 1.89249 1.39739 1.21435 0.94422 1.01828 0.97152 1.20004 0.96533 0.97139 0.97308 1.21032 0.98355 0.97559 0.93272 1.21211 0.93814 0.99295 1.00374 1.20977 0.99016 0.95662 0.96101 1.21140 0.97426 1.02394 0.96350 1.17624 0.95752 0.93617 0.85587 1.91534 1.96221 1.73313 1.49894 1.21987 0.94532 0.99969 0.99120 1.20797 0.97587 0.86581 0.92686 0.93706 0.89807 0.96095 0.93043 0.92079 0.79431 0.90379 0.89886 0.84978 0.85434 0.85289 0.84915 0.92550 0.91293 0.95499 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.84 11.18 55.49 0.62 -26.21 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -7.05 9.58 -15.06 -0.14 -7.20 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -15.35 3.00 -172.59 -0.52 -15.87 16 10 C 0.18 4.40 5.04 -3.93 -0.02 4.38 16 11 C -0.17 -3.17 4.62 -26.83 -0.12 -3.29 16 12 C 0.15 2.58 0.73 -90.58 -0.07 2.52 16 13 O -0.54 -10.35 10.97 -35.23 -0.39 -10.74 16 14 C -0.11 -1.56 4.43 -27.88 -0.12 -1.69 16 15 C -0.11 -1.42 4.04 -104.55 -0.42 -1.85 16 16 C -0.08 -0.97 8.27 -39.60 -0.33 -1.30 16 17 C -0.13 -1.28 10.04 -39.58 -0.40 -1.68 16 18 C -0.10 -0.95 10.04 -39.59 -0.40 -1.35 16 19 C -0.15 -1.67 10.03 -39.52 -0.40 -2.06 16 20 C 0.09 1.21 5.93 -39.42 -0.23 0.98 16 21 F -0.13 -1.89 15.28 2.25 0.03 -1.86 16 22 C -0.12 -2.15 5.11 -26.61 -0.14 -2.29 16 23 C 0.15 3.37 6.28 -3.71 -0.02 3.35 16 24 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.08 2.29 6.05 -51.93 -0.31 1.98 16 26 H 0.02 0.56 7.81 -51.93 -0.41 0.16 16 27 H 0.05 0.90 6.33 -51.93 -0.33 0.58 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.36 6.20 6.47 45.56 0.29 6.50 16 30 H 0.08 1.10 7.79 -51.93 -0.40 0.70 16 31 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 39 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -31.24 311.51 -8.38 -39.63 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.90 Total: 4.96 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -2.90 Total: -11.54 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.10 Total: -42.08 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.39 Total: -10.74 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.03 Total: -1.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.24 -8.38 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365863794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.902 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds