Wall clock time and date at job start Wed Apr 15 2020 11:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48499 * 109.47051 * 239.99886 * 3 2 1 5 5 H 1.48497 * 109.47273 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46803 * 119.99998 * 3 2 1 7 7 C 1.38815 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99639 * 162.89001 * 7 2 1 9 9 N 1.36935 * 120.00026 * 343.17001 * 7 2 1 10 10 C 1.46930 * 120.62935 * 331.89562 * 9 7 2 11 11 C 1.52762 * 109.00426 * 233.58408 * 10 9 7 12 12 C 1.53037 * 109.38664 * 305.58696 * 11 10 9 13 13 O 1.42896 * 109.45840 * 301.22156 * 12 11 10 14 14 C 1.53000 * 109.46128 * 181.26034 * 12 11 10 15 15 C 1.50700 * 109.47013 * 59.93176 * 14 12 11 16 16 C 1.38217 * 120.01572 * 264.72523 * 15 14 12 17 17 C 1.38219 * 120.02501 * 179.72130 * 16 15 14 18 18 C 1.38267 * 120.05426 * 0.55285 * 17 16 15 19 19 C 1.38174 * 120.02387 * 359.72416 * 18 17 16 20 20 C 1.38445 * 120.01147 * 85.00170 * 15 14 12 21 21 F 1.35101 * 120.02308 * 0.02562 * 20 15 14 22 22 C 1.53042 * 109.53437 * 61.24236 * 12 11 10 23 23 C 1.46919 * 120.62952 * 152.17450 * 9 7 2 24 24 H 0.97003 * 120.00199 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.58738 * 353.41555 * 10 9 7 26 26 H 1.08996 * 109.58558 * 113.84632 * 10 9 7 27 27 H 1.09005 * 109.56252 * 185.54994 * 11 10 9 28 28 H 1.08999 * 109.38709 * 65.51901 * 11 10 9 29 29 H 0.96698 * 114.00176 * 300.06582 * 13 12 11 30 30 H 1.08994 * 109.47109 * 179.97438 * 14 12 11 31 31 H 1.09000 * 109.47488 * 299.93178 * 14 12 11 32 32 H 1.08000 * 119.98425 * 0.02562 * 16 15 14 33 33 H 1.08005 * 119.97507 * 180.27621 * 17 16 15 34 34 H 1.08000 * 119.99156 * 179.74209 * 18 17 16 35 35 H 1.08002 * 120.01349 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.49382 * 178.68502 * 22 12 11 37 37 H 1.08998 * 109.50244 * 58.58676 * 22 12 11 38 38 H 1.09000 * 109.58944 * 246.15048 * 23 9 7 39 39 H 1.08994 * 109.59015 * 6.43740 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0543 -1.2227 -0.2757 9 7 1.3695 -2.3628 0.3423 10 6 0.2235 -2.3418 1.2615 11 6 0.4863 -3.3182 2.4066 12 6 0.8067 -4.7001 1.8325 13 8 -0.2892 -5.1492 1.0330 14 6 1.0394 -5.6868 2.9785 15 6 -0.2016 -5.7701 3.8294 16 6 -0.3132 -4.9932 4.9671 17 6 -1.4538 -5.0652 5.7445 18 6 -2.4795 -5.9226 5.3915 19 6 -2.3677 -6.7044 4.2577 20 6 -1.2279 -6.6290 3.4749 21 9 -1.1172 -7.3933 2.3664 22 6 2.0672 -4.6156 0.9686 23 6 1.8188 -3.6534 -0.1973 24 1 -0.4850 0.8401 0.0004 25 1 0.0951 -1.3365 1.6626 26 1 -0.6782 -2.6427 0.7282 27 1 -0.3980 -3.3837 3.0406 28 1 1.3316 -2.9645 2.9969 29 1 -1.1231 -5.2264 1.5165 30 1 1.2672 -6.6712 2.5697 31 1 1.8757 -5.3449 3.5882 32 1 0.4890 -4.3261 5.2460 33 1 -1.5421 -4.4545 6.6310 34 1 -3.3684 -5.9811 6.0020 35 1 -3.1691 -7.3738 3.9819 36 1 2.3081 -5.6048 0.5790 37 1 2.8979 -4.2495 1.5718 38 1 1.0498 -4.0634 -0.8519 39 1 2.7412 -3.5128 -0.7606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000365863794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:52 Heat of formation + Delta-G solvation = -73.456951 kcal Electronic energy + Delta-G solvation = -22654.525420 eV Core-core repulsion = 19282.949963 eV Total energy + Delta-G solvation = -3371.575458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.84049 -40.87780 -39.35306 -36.90739 -34.27930 -33.69684 -31.68218 -31.43788 -31.30107 -28.40467 -26.06297 -24.05632 -23.65305 -23.27564 -21.87239 -20.77732 -18.82225 -18.43154 -17.54850 -17.29397 -16.88408 -16.72327 -16.31180 -15.92122 -15.43332 -15.20553 -14.95591 -14.88916 -14.81029 -14.22841 -14.00966 -13.70221 -13.31673 -13.23902 -12.97051 -12.87356 -12.58817 -12.51425 -12.43257 -12.25987 -12.02194 -11.90455 -11.79815 -11.62242 -11.04847 -10.78893 -10.50539 -9.80899 -9.53811 -8.65847 -7.85769 -5.31696 0.22173 0.29932 1.47136 1.49478 1.56703 2.52219 2.67074 3.26254 3.33759 3.37186 3.59523 3.70452 3.85950 4.02514 4.03144 4.13237 4.20885 4.36535 4.44972 4.50638 4.68106 4.73527 4.80327 4.88613 4.93341 4.95366 5.05674 5.15450 5.19963 5.25847 5.28611 5.37518 5.46463 5.49024 5.52760 5.64795 5.77500 6.00604 6.39508 6.77347 7.16007 7.87502 8.41524 9.20728 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.005011 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.960187 B = 5586.036364 C = 6083.491712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.187 3.813 11 C -0.148 4.148 12 C 0.149 3.851 13 O -0.563 6.563 14 C -0.098 4.098 15 C -0.127 4.127 16 C -0.094 4.094 17 C -0.128 4.128 18 C -0.094 4.094 19 C -0.158 4.158 20 C 0.071 3.929 21 F -0.146 7.146 22 C -0.110 4.110 23 C 0.146 3.854 24 H 0.249 0.751 25 H 0.052 0.948 26 H -0.014 1.014 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.365 0.635 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.004 0.996 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -13.250 14.192 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.331 5.331 10 C 0.061 3.939 11 C -0.187 4.187 12 C 0.108 3.892 13 O -0.369 6.369 14 C -0.135 4.135 15 C -0.128 4.128 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.112 4.112 19 C -0.177 4.177 20 C 0.052 3.948 21 F -0.125 7.125 22 C -0.149 4.149 23 C 0.021 3.979 24 H 0.058 0.942 25 H 0.070 0.930 26 H 0.004 0.996 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.213 0.787 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.159 0.841 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.166 0.834 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.022 0.978 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.927 -13.155 13.656 19.059 hybrid contribution -0.301 0.844 -0.303 0.946 sum -2.228 -12.311 13.353 18.299 Atomic orbital electron populations 1.70220 1.06843 1.25862 1.55470 1.25852 0.96023 1.01642 1.01236 0.85301 0.77512 0.78944 0.78446 1.20179 1.22040 1.20045 1.19546 0.92918 0.86002 1.41111 0.91436 1.44286 1.35614 1.02127 1.51102 1.20319 0.87621 0.97001 0.88913 1.22580 1.01511 0.96147 0.98460 1.21061 0.87188 0.91332 0.89590 1.86565 1.20158 1.89297 1.40857 1.21216 0.95805 1.00498 0.96024 1.19973 0.96269 0.98381 0.98133 1.21242 0.99398 0.97476 0.93045 1.21582 0.93089 0.99126 1.00752 1.21391 0.99867 0.94351 0.95542 1.21428 0.97089 1.02768 0.96422 1.17923 0.96857 0.94236 0.85806 1.91490 1.96390 1.73811 1.50823 1.21903 0.95525 0.99693 0.97774 1.20894 0.96727 0.86093 0.94220 0.94166 0.93007 0.99565 0.91428 0.91413 0.78733 0.90420 0.88196 0.84091 0.82837 0.82192 0.83368 0.90495 0.90004 0.97818 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 11.18 21.65 0.24 -57.11 16 2 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 3 Si 0.97 45.53 29.59 68.60 2.03 47.56 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.27 -15.11 9.58 84.03 0.81 -14.31 16 8 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 9 N -0.61 -32.18 3.00 -699.95 -2.10 -34.28 16 10 C 0.19 9.49 5.04 86.22 0.43 9.93 16 11 C -0.15 -5.59 4.62 30.53 0.14 -5.45 16 12 C 0.15 5.06 0.73 -10.77 -0.01 5.05 16 13 O -0.56 -21.50 10.97 -148.98 -1.63 -23.13 16 14 C -0.10 -2.58 4.43 29.85 0.13 -2.45 16 15 C -0.13 -3.09 4.04 -19.82 -0.08 -3.17 16 16 C -0.09 -1.92 8.27 22.26 0.18 -1.74 16 17 C -0.13 -2.12 10.04 22.27 0.22 -1.89 16 18 C -0.09 -1.47 10.04 22.26 0.22 -1.25 16 19 C -0.16 -3.08 10.03 22.31 0.22 -2.86 16 20 C 0.07 1.75 5.93 22.38 0.13 1.88 16 21 F -0.15 -4.17 15.28 44.97 0.69 -3.49 16 22 C -0.11 -3.92 5.11 30.67 0.16 -3.77 16 23 C 0.15 6.64 6.28 86.37 0.54 7.19 16 24 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 25 H 0.05 2.93 6.05 -2.39 -0.01 2.92 16 26 H -0.01 -0.78 7.81 -2.39 -0.02 -0.79 16 27 H 0.07 2.32 6.33 -2.38 -0.02 2.30 16 28 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.37 12.73 6.47 -74.06 -0.48 12.25 16 30 H 0.08 2.06 7.79 -2.39 -0.02 2.04 16 31 H 0.10 2.27 8.05 -2.39 -0.02 2.25 16 32 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.00 0.19 7.81 -2.39 -0.02 0.17 16 39 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 Total: -1.00 -69.13 311.51 3.33 -65.81 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.57 Total: 20.06 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 3.53 Total: -15.42 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -1.86 Total: -91.39 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -1.63 Total: -23.13 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.69 Total: -3.49 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.13 3.33 -65.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365863794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.650 kcal (2) G-P(sol) polarization free energy of solvation -69.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds