Wall clock time and date at job start Wed Apr 15 2020 11:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99992 * 2 1 4 4 H 1.48499 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47017 * 300.00143 * 3 2 1 6 6 H 1.48498 * 109.47003 * 59.99813 * 3 2 1 7 7 C 1.37875 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00540 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47145 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47240 * 179.97438 * 10 9 7 12 12 C 1.48535 * 110.99825 * 307.39699 * 11 10 9 13 13 C 1.55103 * 103.28568 * 200.32856 * 12 11 10 14 14 C 1.54596 * 102.84180 * 37.31008 * 13 12 11 15 15 O 1.42902 * 110.30987 * 97.11550 * 14 13 12 16 16 C 1.50699 * 110.30872 * 219.18380 * 14 13 12 17 17 C 1.38247 * 119.97464 * 86.93537 * 16 14 13 18 18 C 1.38194 * 120.02611 * 180.27505 * 17 16 14 19 19 C 1.38457 * 119.97439 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.02589 * 180.02562 * 19 18 17 21 21 C 1.38454 * 119.94860 * 0.02562 * 19 18 17 22 22 C 1.38192 * 119.97673 * 359.97438 * 21 19 18 23 23 C 1.47903 * 111.00270 * 190.00419 * 11 10 9 24 24 H 0.97003 * 119.99879 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46934 * 59.99409 * 9 7 2 26 26 H 1.08999 * 109.47020 * 300.00212 * 9 7 2 27 27 H 1.09005 * 109.46895 * 60.00222 * 10 9 7 28 28 H 1.08999 * 109.47794 * 300.00301 * 10 9 7 29 29 H 1.08996 * 110.67288 * 318.71540 * 12 11 10 30 30 H 1.09003 * 110.66091 * 81.67739 * 12 11 10 31 31 H 1.08997 * 110.70966 * 279.00108 * 13 12 11 32 32 H 1.08997 * 110.80810 * 155.66480 * 13 12 11 33 33 H 0.96695 * 113.99947 * 62.79147 * 15 14 13 34 34 H 1.08003 * 119.98365 * 0.27230 * 17 16 14 35 35 H 1.08010 * 120.00987 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.01212 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.99259 * 180.02562 * 22 21 19 38 38 H 1.09000 * 109.91275 * 26.48855 * 23 11 10 39 39 H 1.08994 * 110.07747 * 265.29223 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.5157 -4.9738 1.1032 13 6 0.2437 -6.4901 1.2836 14 6 1.6371 -7.1189 1.0530 15 8 2.2836 -7.3644 2.3036 16 6 1.5096 -8.4006 0.2707 17 6 1.4951 -8.3677 -1.1113 18 6 1.3725 -9.5418 -1.8297 19 6 1.2646 -10.7515 -1.1649 20 9 1.1453 -11.9001 -1.8662 21 6 1.2793 -10.7833 0.2192 22 6 1.4020 -9.6079 0.9355 23 6 2.4234 -6.0731 0.2410 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6042 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.9343 -4.5482 2.0151 30 1 -0.3955 -4.4480 0.8177 31 1 -0.4679 -6.8454 0.5384 32 1 -0.1132 -6.7023 2.2914 33 1 1.8214 -7.9997 2.8673 34 1 1.5796 -7.4240 -1.6297 35 1 1.3608 -9.5158 -2.9094 36 1 1.1948 -11.7263 0.7389 37 1 1.4138 -9.6324 2.0152 38 1 3.2924 -5.7394 0.8081 39 1 2.7426 -6.5032 -0.7082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369527103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:54 Heat of formation + Delta-G solvation = -65.710522 kcal Electronic energy + Delta-G solvation = -21382.127617 eV Core-core repulsion = 18010.888069 eV Total energy + Delta-G solvation = -3371.239547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.09093 -40.41934 -38.16768 -36.09715 -33.37293 -31.94901 -31.30193 -30.40842 -28.98256 -27.13653 -24.42101 -23.28324 -22.62511 -21.97037 -20.21168 -19.81042 -18.25502 -17.14731 -16.51722 -16.47207 -15.82691 -15.74223 -15.17135 -14.96827 -14.43613 -14.10277 -13.85063 -13.64410 -13.49764 -13.01899 -12.90550 -12.73657 -12.38526 -12.11057 -12.04662 -11.52870 -11.29245 -11.03654 -10.99324 -10.82868 -10.75697 -10.50427 -10.19450 -9.91606 -9.39418 -9.33003 -9.13431 -8.73482 -8.37055 -7.91213 -6.01653 -4.03925 0.88167 1.00150 3.30440 3.30932 3.37973 3.42136 3.99168 4.05567 4.33375 4.42365 4.43773 4.62145 4.63852 4.76119 4.82818 5.04648 5.21833 5.34692 5.43991 5.58758 5.63694 5.71571 5.82322 5.84011 5.88014 6.03004 6.04827 6.14478 6.25153 6.31659 6.39052 6.44249 6.64836 6.88672 7.32847 7.40250 7.51972 7.70404 7.83907 8.02793 8.40913 9.03045 9.60039 11.09755 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037352 B = 0.003222 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.436269 B = 8688.164235 C = 8967.408245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.052 3.948 11 N -0.514 5.514 12 C 0.044 3.956 13 C -0.143 4.143 14 C 0.162 3.838 15 O -0.548 6.548 16 C -0.106 4.106 17 C -0.077 4.077 18 C -0.150 4.150 19 C 0.092 3.908 20 F -0.143 7.143 21 C -0.153 4.153 22 C -0.087 4.087 23 C 0.043 3.957 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.018 0.982 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.372 0.628 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.058 0.942 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 -21.278 1.670 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.075 4.075 11 N -0.239 5.239 12 C -0.083 4.083 13 C -0.181 4.181 14 C 0.121 3.879 15 O -0.354 6.354 16 C -0.107 4.107 17 C -0.094 4.094 18 C -0.169 4.169 19 C 0.072 3.928 20 F -0.121 7.121 21 C -0.172 4.172 22 C -0.105 4.105 23 C -0.085 4.085 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.220 0.780 34 H 0.166 0.834 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.076 0.924 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.116 -20.801 0.888 20.849 hybrid contribution 0.424 0.372 0.876 1.042 sum 1.540 -20.428 1.764 20.562 Atomic orbital electron populations 1.69974 1.06022 1.26499 1.50771 1.24991 0.94842 0.99216 0.95274 0.86537 0.80120 0.83770 0.77579 1.19743 1.20968 1.21043 1.21221 0.93059 0.90989 1.50741 0.92685 1.19155 0.93987 0.90341 0.97825 1.22551 0.97163 0.88392 0.99365 1.64990 1.13275 1.03262 1.42374 1.23158 0.97621 0.93970 0.93592 1.23268 0.95729 0.97000 1.02140 1.20891 0.93014 0.90750 0.83284 1.86660 1.53339 1.66451 1.28952 1.20496 1.00424 0.95203 0.94591 1.21154 0.96484 0.98541 0.93267 1.21207 1.03356 0.91156 1.01150 1.17759 1.03197 0.81881 0.89918 1.91493 1.93490 1.48078 1.79071 1.21050 1.04177 0.99751 0.92196 1.20720 0.98671 0.91102 1.00015 1.23026 0.95651 0.91456 0.98396 0.93041 0.95703 0.96344 0.95719 0.91723 0.93319 0.89218 0.89977 0.90568 0.78011 0.83449 0.84513 0.84808 0.85272 0.92361 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.62 4.63 -27.88 -0.13 0.49 16 10 C 0.05 1.10 4.97 -3.83 -0.02 1.08 16 11 N -0.51 -9.10 5.40 -230.34 -1.24 -10.35 16 12 C 0.04 0.74 5.11 -1.81 -0.01 0.73 16 13 C -0.14 -1.81 6.35 -24.78 -0.16 -1.97 16 14 C 0.16 2.01 1.23 -90.42 -0.11 1.90 16 15 O -0.55 -6.57 12.68 -35.23 -0.45 -7.01 16 16 C -0.11 -1.17 4.77 -104.62 -0.50 -1.67 16 17 C -0.08 -0.84 8.77 -39.59 -0.35 -1.19 16 18 C -0.15 -1.54 10.03 -39.52 -0.40 -1.94 16 19 C 0.09 0.96 7.30 -39.42 -0.29 0.68 16 20 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 21 C -0.15 -1.42 10.03 -39.52 -0.40 -1.81 16 22 C -0.09 -0.80 9.34 -39.60 -0.37 -1.17 16 23 C 0.04 0.64 5.71 -2.75 -0.02 0.62 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.02 0.49 6.79 -51.93 -0.35 0.14 16 27 H 0.02 0.53 7.81 -51.93 -0.41 0.12 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.05 0.87 8.00 -51.93 -0.42 0.45 16 30 H 0.09 1.60 7.65 -51.93 -0.40 1.20 16 31 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 32 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.37 2.83 7.40 45.56 0.34 3.17 16 34 H 0.15 1.65 6.35 -52.48 -0.33 1.31 16 35 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 0.85 6.51 -52.49 -0.34 0.51 16 38 H 0.06 0.95 7.39 -51.93 -0.38 0.56 16 39 H 0.09 1.20 5.63 -51.93 -0.29 0.91 16 LS Contribution 320.21 15.07 4.83 4.83 Total: -1.00 -31.18 320.21 -8.90 -40.08 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.64 Total: 1.05 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.15 Total: -17.70 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.51 Total: -36.28 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.45 Total: -7.01 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.18 -8.90 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369527103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.631 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds