Wall clock time and date at job start Wed Apr 15 2020 11:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99992 * 2 1 4 4 H 1.48499 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47017 * 300.00143 * 3 2 1 6 6 H 1.48498 * 109.47003 * 59.99813 * 3 2 1 7 7 C 1.37875 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00540 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47145 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47240 * 179.97438 * 10 9 7 12 12 C 1.48535 * 110.99825 * 307.39699 * 11 10 9 13 13 C 1.55103 * 103.28568 * 200.32856 * 12 11 10 14 14 C 1.54596 * 102.84180 * 37.31008 * 13 12 11 15 15 O 1.42902 * 110.30987 * 97.11550 * 14 13 12 16 16 C 1.50699 * 110.30872 * 219.18380 * 14 13 12 17 17 C 1.38247 * 119.97464 * 86.93537 * 16 14 13 18 18 C 1.38194 * 120.02611 * 180.27505 * 17 16 14 19 19 C 1.38457 * 119.97439 * 359.97438 * 18 17 16 20 20 F 1.35101 * 120.02589 * 180.02562 * 19 18 17 21 21 C 1.38454 * 119.94860 * 0.02562 * 19 18 17 22 22 C 1.38192 * 119.97673 * 359.97438 * 21 19 18 23 23 C 1.47903 * 111.00270 * 190.00419 * 11 10 9 24 24 H 0.97003 * 119.99879 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46934 * 59.99409 * 9 7 2 26 26 H 1.08999 * 109.47020 * 300.00212 * 9 7 2 27 27 H 1.09005 * 109.46895 * 60.00222 * 10 9 7 28 28 H 1.08999 * 109.47794 * 300.00301 * 10 9 7 29 29 H 1.08996 * 110.67288 * 318.71540 * 12 11 10 30 30 H 1.09003 * 110.66091 * 81.67739 * 12 11 10 31 31 H 1.08997 * 110.70966 * 279.00108 * 13 12 11 32 32 H 1.08997 * 110.80810 * 155.66480 * 13 12 11 33 33 H 0.96695 * 113.99947 * 62.79147 * 15 14 13 34 34 H 1.08003 * 119.98365 * 0.27230 * 17 16 14 35 35 H 1.08010 * 120.00987 * 179.97438 * 18 17 16 36 36 H 1.08001 * 120.01212 * 179.97438 * 21 19 18 37 37 H 1.07999 * 119.99259 * 180.02562 * 22 21 19 38 38 H 1.09000 * 109.91275 * 26.48855 * 23 11 10 39 39 H 1.08994 * 110.07747 * 265.29223 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.5157 -4.9738 1.1032 13 6 0.2437 -6.4901 1.2836 14 6 1.6371 -7.1189 1.0530 15 8 2.2836 -7.3644 2.3036 16 6 1.5096 -8.4006 0.2707 17 6 1.4951 -8.3677 -1.1113 18 6 1.3725 -9.5418 -1.8297 19 6 1.2646 -10.7515 -1.1649 20 9 1.1453 -11.9001 -1.8662 21 6 1.2793 -10.7833 0.2192 22 6 1.4020 -9.6079 0.9355 23 6 2.4234 -6.0731 0.2410 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6042 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.9343 -4.5482 2.0151 30 1 -0.3955 -4.4480 0.8177 31 1 -0.4679 -6.8454 0.5384 32 1 -0.1132 -6.7023 2.2914 33 1 1.8214 -7.9997 2.8673 34 1 1.5796 -7.4240 -1.6297 35 1 1.3608 -9.5158 -2.9094 36 1 1.1948 -11.7263 0.7389 37 1 1.4138 -9.6324 2.0152 38 1 3.2924 -5.7394 0.8081 39 1 2.7426 -6.5032 -0.7082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369527103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:54 Heat of formation + Delta-G solvation = -86.939369 kcal Electronic energy + Delta-G solvation = -21383.048168 eV Core-core repulsion = 18010.888069 eV Total energy + Delta-G solvation = -3372.160099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.89950 -41.40265 -39.20096 -37.26559 -35.30352 -33.33973 -32.10115 -31.60097 -30.48659 -28.44712 -26.18550 -24.21919 -23.57684 -23.43255 -21.45920 -21.20087 -19.07788 -18.55979 -18.03059 -17.35822 -17.03717 -16.59222 -16.58270 -16.29194 -15.82848 -15.51324 -14.98408 -14.65722 -14.43385 -14.18629 -14.04925 -14.01367 -13.73981 -13.58061 -13.34031 -12.90265 -12.78528 -12.56538 -12.40680 -12.36572 -11.93018 -11.87266 -11.77434 -11.33454 -11.29246 -11.03821 -10.56757 -10.07255 -9.56421 -9.39041 -8.21253 -6.32360 0.08638 0.26668 1.39935 1.40179 1.53584 2.39520 2.52393 2.95681 3.12289 3.23898 3.38624 3.45977 3.57133 3.66841 3.89149 3.96424 4.27838 4.31117 4.35891 4.43408 4.49717 4.61028 4.66113 4.74702 4.86625 4.95213 4.98041 5.00808 5.05765 5.07219 5.16031 5.26599 5.43443 5.50682 5.61231 5.76615 5.88858 5.92968 6.07487 6.28235 6.79146 6.84012 7.36725 8.90877 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037352 B = 0.003222 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.436269 B = 8688.164235 C = 8967.408245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.068 3.932 11 N -0.520 5.520 12 C 0.039 3.961 13 C -0.131 4.131 14 C 0.175 3.825 15 O -0.560 6.560 16 C -0.115 4.115 17 C -0.088 4.088 18 C -0.155 4.155 19 C 0.079 3.921 20 F -0.148 7.148 21 C -0.149 4.149 22 C -0.080 4.080 23 C 0.039 3.961 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.002 1.002 27 H 0.020 0.980 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.393 0.607 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.160 0.840 38 H 0.045 0.955 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -22.645 2.492 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.059 4.059 11 N -0.244 5.244 12 C -0.089 4.089 13 C -0.169 4.169 14 C 0.133 3.867 15 O -0.369 6.369 16 C -0.116 4.116 17 C -0.106 4.106 18 C -0.174 4.174 19 C 0.059 3.941 20 F -0.127 7.127 21 C -0.168 4.168 22 C -0.098 4.098 23 C -0.088 4.088 24 H 0.073 0.927 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.244 0.756 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.063 0.937 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.820 -22.197 1.720 22.338 hybrid contribution 0.179 0.740 0.627 0.986 sum 1.999 -21.457 2.347 21.678 Atomic orbital electron populations 1.70101 1.07724 1.27738 1.51412 1.25939 0.95776 1.03249 0.94599 0.85392 0.79030 0.78732 0.77842 1.18693 1.20251 1.20318 1.21642 0.93489 0.92330 1.50924 0.92354 1.18957 0.94143 0.91869 0.95316 1.22196 0.95902 0.88699 0.99150 1.64905 1.13754 1.02607 1.43169 1.23136 0.96304 0.97061 0.92351 1.23224 0.96328 0.93379 1.03924 1.20556 0.91827 0.90724 0.83543 1.86622 1.53842 1.67464 1.28956 1.20387 1.01651 0.95143 0.94375 1.21132 0.97326 0.98495 0.93603 1.21313 1.03239 0.90999 1.01815 1.17995 1.03679 0.81689 0.90692 1.91480 1.93594 1.48311 1.79331 1.21341 1.02906 1.00862 0.91661 1.21016 0.97180 0.90057 1.01557 1.23097 0.94957 0.91132 0.99647 0.92713 0.98660 0.98357 0.96199 0.91584 0.94942 0.91365 0.89392 0.87960 0.75551 0.84259 0.83563 0.82454 0.82210 0.93669 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.97 44.50 29.54 68.60 2.03 46.52 16 4 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.85 4.63 29.85 0.14 1.99 16 10 C 0.07 2.97 4.97 86.30 0.43 3.40 16 11 N -0.52 -18.80 5.40 -882.67 -4.76 -23.57 16 12 C 0.04 1.34 5.11 86.71 0.44 1.78 16 13 C -0.13 -3.11 6.35 31.86 0.20 -2.90 16 14 C 0.17 4.03 1.23 -10.66 -0.01 4.01 16 15 O -0.56 -11.90 12.68 -148.98 -1.89 -13.79 16 16 C -0.11 -2.26 4.77 -19.86 -0.09 -2.35 16 17 C -0.09 -1.82 8.77 22.26 0.20 -1.62 16 18 C -0.15 -2.98 10.03 22.31 0.22 -2.76 16 19 C 0.08 1.50 7.30 22.37 0.16 1.66 16 20 F -0.15 -3.06 17.27 44.97 0.78 -2.28 16 21 C -0.15 -2.28 10.03 22.31 0.22 -2.06 16 22 C -0.08 -1.19 9.34 22.26 0.21 -0.99 16 23 C 0.04 1.16 5.71 86.45 0.49 1.65 16 24 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 25 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.00 -0.11 6.79 -2.39 -0.02 -0.12 16 27 H 0.02 0.87 7.81 -2.38 -0.02 0.85 16 28 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.03 1.20 8.00 -2.39 -0.02 1.18 16 30 H 0.07 2.58 7.65 -2.39 -0.02 2.56 16 31 H 0.09 2.02 7.86 -2.39 -0.02 2.00 16 32 H 0.10 1.91 8.08 -2.39 -0.02 1.89 16 33 H 0.39 4.45 7.40 -74.06 -0.55 3.90 16 34 H 0.14 3.06 6.35 -2.91 -0.02 3.04 16 35 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 36 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 37 H 0.16 1.32 6.51 -2.91 -0.02 1.30 16 38 H 0.04 1.45 7.39 -2.39 -0.02 1.44 16 39 H 0.10 2.71 5.63 -2.39 -0.01 2.69 16 Total: -1.00 -68.21 320.21 0.26 -67.95 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.52 Total: 10.39 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 3.31 Total: -28.81 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -4.48 Total: -79.98 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.89 Total: -13.79 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.21 0.26 -67.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369527103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.987 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds