Wall clock time and date at job start Wed Apr 15 2020 11:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99838 * 2 1 4 4 H 1.48500 * 109.46982 * 240.00086 * 3 2 1 5 5 H 1.48506 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47105 * 119.99720 * 3 2 1 7 7 C 1.37867 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00279 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00107 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47290 * 179.97438 * 9 7 2 11 11 N 1.46893 * 109.46925 * 184.75363 * 10 9 7 12 12 C 1.48559 * 110.99877 * 175.79610 * 11 10 9 13 13 C 1.54389 * 104.59521 * 200.96285 * 12 11 10 14 14 C 1.54256 * 105.05799 * 23.84920 * 13 12 11 15 15 O 1.42901 * 110.32494 * 241.10491 * 14 13 12 16 16 C 1.50706 * 110.31931 * 119.00058 * 14 13 12 17 17 C 1.38243 * 119.97255 * 302.07532 * 16 14 13 18 18 C 1.38197 * 120.02084 * 179.77124 * 17 16 14 19 19 C 1.38458 * 119.97943 * 0.50445 * 18 17 16 20 20 F 1.35100 * 120.03156 * 179.76522 * 19 18 17 21 21 C 1.38468 * 119.94320 * 359.75358 * 19 18 17 22 22 C 1.38187 * 119.97554 * 359.97438 * 21 19 18 23 23 C 1.48568 * 111.00238 * 60.37835 * 11 10 9 24 24 H 0.97002 * 120.00041 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46581 * 60.00104 * 9 7 2 26 26 H 1.08999 * 109.46974 * 300.00380 * 9 7 2 27 27 H 1.09004 * 109.46567 * 64.76162 * 10 9 7 28 28 H 1.08992 * 109.46980 * 304.75854 * 10 9 7 29 29 H 1.08998 * 110.41293 * 82.18298 * 12 11 10 30 30 H 1.08994 * 110.51018 * 319.78907 * 12 11 10 31 31 H 1.08997 * 110.31881 * 264.95680 * 13 12 11 32 32 H 1.08999 * 110.40793 * 142.79357 * 13 12 11 33 33 H 0.96708 * 113.99673 * 298.54648 * 15 14 13 34 34 H 1.08002 * 119.99022 * 0.02562 * 17 16 14 35 35 H 1.08006 * 120.01411 * 180.25919 * 18 17 16 36 36 H 1.08000 * 120.00663 * 179.97438 * 21 19 18 37 37 H 1.08004 * 119.99036 * 179.97438 * 22 21 19 38 38 H 1.08996 * 110.40458 * 40.25613 * 23 11 10 39 39 H 1.09006 * 110.40809 * 277.81921 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7466 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 7 1.5145 -4.9311 -0.1122 12 6 2.4527 -6.0782 -0.2171 13 6 1.6159 -7.2081 -0.8547 14 6 0.4836 -6.4879 -1.6154 15 8 -0.7891 -6.8717 -1.0911 16 6 0.5590 -6.8030 -3.0873 17 6 1.7081 -6.5109 -3.7981 18 6 1.7801 -6.8038 -5.1468 19 6 0.6970 -7.3804 -5.7883 20 9 0.7645 -7.6628 -7.1077 21 6 -0.4554 -7.6676 -5.0763 22 6 -0.5230 -7.3790 -3.7266 23 6 0.7315 -4.9835 -1.3737 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5574 -0.8880 26 1 0.6248 -2.5562 0.8919 27 1 2.8153 -3.6529 0.9306 28 1 2.9262 -3.5578 -0.8434 29 1 2.8019 -6.3754 0.7717 30 1 3.2974 -5.8234 -0.8570 31 1 1.2009 -7.8544 -0.0813 32 1 2.2262 -7.7895 -1.5458 33 1 -0.9803 -7.8160 -1.1747 34 1 2.5514 -6.0575 -3.2984 35 1 2.6795 -6.5794 -5.7011 36 1 -1.3009 -8.1169 -5.5758 37 1 -1.4219 -7.6025 -3.1712 38 1 1.3058 -4.5559 -2.1955 39 1 -0.2153 -4.4563 -1.2555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369527104.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:56 Heat of formation + Delta-G solvation = -68.005107 kcal Electronic energy + Delta-G solvation = -21572.290937 eV Core-core repulsion = 18200.951889 eV Total energy + Delta-G solvation = -3371.339048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.05590 -40.36118 -38.11345 -36.01721 -33.40638 -31.95603 -31.18201 -30.53486 -28.36659 -27.58045 -24.39772 -23.27316 -22.77234 -21.48121 -20.49796 -19.68571 -18.17910 -17.28039 -16.63908 -16.33027 -15.75308 -15.54878 -15.02950 -14.77736 -14.49642 -14.31922 -13.82934 -13.62385 -13.44400 -13.22923 -12.75748 -12.55781 -12.40423 -12.09169 -11.85270 -11.52013 -11.35044 -11.17857 -10.96009 -10.87810 -10.71396 -10.53485 -10.14019 -9.88417 -9.36046 -9.30661 -9.14528 -8.70894 -8.33428 -7.91741 -5.98636 -4.01841 0.91342 1.03351 3.33626 3.34630 3.38295 3.40233 4.04789 4.17640 4.22223 4.45526 4.52968 4.67355 4.74119 4.77832 4.83976 5.08549 5.17950 5.33143 5.37028 5.56036 5.70224 5.74082 5.77237 5.85939 5.92958 5.93441 6.02760 6.05296 6.23974 6.31049 6.35393 6.43498 6.67588 6.89790 7.32650 7.42658 7.65401 7.73601 7.86329 8.06594 8.42528 9.05034 9.61914 11.12565 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018855 B = 0.004047 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.686160 B = 6917.351172 C = 7594.671505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.051 3.949 11 N -0.505 5.505 12 C 0.030 3.970 13 C -0.145 4.145 14 C 0.169 3.831 15 O -0.537 6.537 16 C -0.112 4.112 17 C -0.079 4.079 18 C -0.150 4.150 19 C 0.092 3.908 20 F -0.142 7.142 21 C -0.152 4.152 22 C -0.082 4.082 23 C 0.057 3.943 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.025 0.975 27 H 0.064 0.936 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.369 0.631 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.057 0.943 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -18.804 -8.189 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.076 4.076 11 N -0.229 5.229 12 C -0.098 4.098 13 C -0.183 4.183 14 C 0.127 3.873 15 O -0.342 6.342 16 C -0.113 4.113 17 C -0.097 4.097 18 C -0.169 4.169 19 C 0.073 3.927 20 F -0.121 7.121 21 C -0.171 4.171 22 C -0.100 4.100 23 C -0.071 4.071 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.216 0.784 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.208 -18.068 -7.614 19.644 hybrid contribution 1.099 0.467 -1.182 1.680 sum 2.307 -17.601 -8.797 19.812 Atomic orbital electron populations 1.69963 1.06020 1.26718 1.50370 1.24985 0.94815 0.99144 0.95254 0.86666 0.79588 0.83204 0.78572 1.20322 1.21246 1.20209 1.21143 0.92903 0.91055 1.51238 0.92846 1.19111 0.93921 0.90129 0.97985 1.22532 0.96904 0.88740 0.99425 1.65522 1.20959 1.03446 1.32946 1.23088 0.94541 0.91797 1.00412 1.23100 0.97159 0.98313 0.99711 1.20778 0.83877 0.96197 0.86434 1.86723 1.35164 1.29089 1.83204 1.20608 0.94399 0.99393 0.96889 1.20853 0.97935 0.97874 0.93058 1.21127 0.98602 1.01668 0.95527 1.17752 0.95852 1.01126 0.77963 1.91492 1.96843 1.91595 1.32174 1.21125 0.97421 1.03478 0.95036 1.20881 0.98505 0.97147 0.93475 1.23071 1.00681 0.91326 0.92056 0.92903 0.96384 0.95688 0.91704 0.95880 0.90206 0.94174 0.89926 0.90971 0.78360 0.84917 0.84631 0.84701 0.84338 0.92446 0.88369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.68 4.95 -27.88 -0.14 0.54 16 10 C 0.05 1.07 4.85 -3.83 -0.02 1.06 16 11 N -0.50 -9.20 5.44 -229.97 -1.25 -10.45 16 12 C 0.03 0.42 6.49 -2.18 -0.01 0.40 16 13 C -0.14 -1.67 6.21 -25.35 -0.16 -1.83 16 14 C 0.17 2.22 1.27 -90.39 -0.12 2.11 16 15 O -0.54 -6.98 11.96 -35.23 -0.42 -7.41 16 16 C -0.11 -1.32 4.75 -104.61 -0.50 -1.81 16 17 C -0.08 -0.90 8.09 -39.59 -0.32 -1.22 16 18 C -0.15 -1.63 10.03 -39.52 -0.40 -2.03 16 19 C 0.09 1.04 7.30 -39.42 -0.29 0.75 16 20 F -0.14 -1.68 17.27 2.25 0.04 -1.64 16 21 C -0.15 -1.55 10.03 -39.52 -0.40 -1.95 16 22 C -0.08 -0.86 9.25 -39.60 -0.37 -1.22 16 23 C 0.06 0.98 4.55 -2.18 -0.01 0.97 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.49 6.71 -51.93 -0.35 0.15 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.02 0.47 7.98 -51.93 -0.41 0.06 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.53 7.91 -51.93 -0.41 0.12 16 31 H 0.08 0.89 7.98 -51.93 -0.41 0.48 16 32 H 0.07 0.71 7.30 -51.93 -0.38 0.33 16 33 H 0.37 3.04 8.22 45.56 0.37 3.41 16 34 H 0.13 1.44 7.77 -52.49 -0.41 1.03 16 35 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.14 1.20 6.67 -52.48 -0.35 0.85 16 38 H 0.06 0.99 6.76 -51.93 -0.35 0.64 16 39 H 0.10 1.97 7.50 -51.93 -0.39 1.59 16 LS Contribution 322.55 15.07 4.86 4.86 Total: -1.00 -31.89 322.55 -8.93 -40.83 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.75 Total: 1.25 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -3.13 Total: -17.82 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.52 Total: -36.75 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.42 Total: -7.41 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.89 -8.93 -40.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369527104.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.178 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds