Wall clock time and date at job start Wed Apr 15 2020 11:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86798 * 120.00081 * 2 1 4 4 H 1.48495 * 109.47265 * 90.00016 * 3 2 1 5 5 H 1.48505 * 109.47143 * 210.00115 * 3 2 1 6 6 H 1.48499 * 109.47179 * 330.00144 * 3 2 1 7 7 C 1.37874 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00340 * 358.33624 * 7 2 1 9 9 C 1.50710 * 119.99500 * 178.34163 * 7 2 1 10 10 O 1.42894 * 112.93937 * 55.31999 * 9 7 2 11 11 C 1.53938 * 113.72744 * 283.74947 * 9 7 2 12 12 N 1.48192 * 86.09911 * 221.95832 * 11 9 7 13 13 C 1.46900 * 111.06814 * 137.52307 * 12 11 9 14 14 C 1.50701 * 109.47034 * 90.56898 * 13 12 11 15 15 N 1.31130 * 126.54983 * 90.00122 * 14 13 12 16 16 C 1.34493 * 105.61498 * 179.97438 * 15 14 13 17 17 C 1.50692 * 126.29233 * 179.97438 * 16 15 14 18 18 C 1.53777 * 113.61961 * 219.13860 * 17 16 15 19 19 C 1.53956 * 87.02139 * 220.04991 * 18 17 16 20 20 C 1.53779 * 87.10997 * 25.36254 * 19 18 17 21 21 N 1.29957 * 107.42308 * 0.02562 * 16 15 14 22 22 O 1.21299 * 110.24660 * 359.70531 * 21 16 15 23 23 C 1.47964 * 90.79773 * 24.60474 * 12 11 9 24 24 H 0.96996 * 120.00167 * 178.20252 * 1 2 3 25 25 H 0.96694 * 114.00278 * 294.04734 * 10 9 7 26 26 H 1.08996 * 113.76320 * 336.23861 * 11 9 7 27 27 H 1.09005 * 113.75612 * 107.61266 * 11 9 7 28 28 H 1.09007 * 109.47314 * 210.56875 * 13 12 11 29 29 H 1.09000 * 109.47290 * 330.56553 * 13 12 11 30 30 H 1.09005 * 112.84944 * 350.34099 * 17 16 15 31 31 H 1.08994 * 113.61314 * 334.57393 * 18 17 16 32 32 H 1.09006 * 113.61058 * 105.46924 * 18 17 16 33 33 H 1.09007 * 113.53662 * 270.80880 * 19 18 17 34 34 H 1.08997 * 113.74274 * 139.94570 * 19 18 17 35 35 H 1.08999 * 113.60937 * 220.08766 * 20 19 18 36 36 H 1.08999 * 113.61328 * 89.19019 * 20 19 18 37 37 H 1.09002 * 113.75665 * 221.07751 * 23 12 11 38 38 H 1.08998 * 113.85836 * 89.72956 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4649 -2.1291 0.0262 9 6 3.5111 -1.1943 -0.0383 10 8 4.0949 -0.4305 1.0189 11 6 4.0960 -0.8787 -1.4268 12 7 5.0690 -1.9620 -1.1515 13 6 5.2695 -2.8056 -2.3372 14 6 6.4081 -2.2565 -3.1577 15 7 7.6761 -2.5704 -3.0424 16 6 8.3158 -1.8401 -3.9732 17 6 9.7982 -1.8416 -4.2443 18 6 10.3683 -0.4486 -4.5593 19 6 11.2352 -1.1340 -5.6311 20 6 10.1601 -2.2321 -5.6870 21 7 7.4209 -1.1321 -4.5951 22 8 6.3179 -1.3608 -4.1453 23 6 4.1264 -2.5957 -0.2031 24 1 -0.4850 -0.8396 -0.0263 25 1 3.9154 0.5180 0.9644 26 1 3.4160 -1.0979 -2.2500 27 1 4.5475 0.1108 -1.4985 28 1 5.5049 -3.8228 -2.0239 29 1 4.3594 -2.8117 -2.9370 30 1 10.3660 -2.3853 -3.4893 31 1 9.6316 0.2421 -4.9695 32 1 10.9444 -0.0173 -3.7405 33 1 12.1969 -1.4832 -5.2553 34 1 11.3241 -0.5625 -6.5550 35 1 10.5685 -3.2386 -5.7776 36 1 9.3664 -2.0300 -6.4063 37 1 4.6022 -2.9756 0.7010 38 1 3.4547 -3.3186 -0.6660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:37 Heat of formation + Delta-G solvation = 87.836318 kcal Electronic energy + Delta-G solvation = -21692.904878 eV Core-core repulsion = 18348.243583 eV Total energy + Delta-G solvation = -3344.661295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.44396 -39.54192 -39.08757 -35.61474 -34.95846 -32.70638 -32.52836 -29.32153 -27.02578 -26.14083 -25.94489 -25.61326 -23.62364 -22.60885 -21.37061 -19.41286 -19.20836 -18.06607 -17.87769 -17.53406 -15.94420 -15.82624 -15.58003 -15.42184 -14.87428 -14.85538 -13.62737 -13.33587 -13.11055 -13.03473 -12.76390 -12.73067 -12.33541 -12.25453 -11.82421 -11.59350 -11.42855 -11.20681 -11.18477 -10.98224 -10.75589 -10.68620 -10.59181 -10.32935 -9.83288 -9.61484 -9.44409 -8.78096 -8.71238 -8.28572 -6.64472 -4.41808 1.23918 2.28058 2.91938 3.17965 3.21481 3.38015 3.61087 4.00245 4.24715 4.33124 4.36981 4.41796 4.54970 4.58359 4.83839 5.05751 5.18467 5.33312 5.34476 5.37720 5.46254 5.50446 5.58520 5.62619 5.64138 5.72377 5.76333 5.85791 5.98440 6.09669 6.15267 6.30214 6.45401 6.67336 6.72733 7.40588 7.62542 8.10926 8.28380 8.56110 8.65068 9.33658 10.70262 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.003890 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.576887 B = 7196.564145 C = 7485.659126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.036 3.964 3 Si 1.035 2.965 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.610 4.610 8 H 0.068 0.932 9 C 0.206 3.794 10 O -0.554 6.554 11 C -0.039 4.039 12 N -0.474 5.474 13 C 0.104 3.896 14 C 0.209 3.791 15 N -0.477 5.477 16 C 0.177 3.823 17 C -0.025 4.025 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.127 4.127 21 N -0.387 5.387 22 O 0.074 5.926 23 C 0.030 3.970 24 H 0.272 0.728 25 H 0.351 0.649 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.892 -3.797 -9.890 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.171 4.171 3 Si 0.864 3.136 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.647 4.647 8 H 0.086 0.914 9 C 0.165 3.835 10 O -0.363 6.363 11 C -0.167 4.167 12 N -0.199 5.199 13 C -0.026 4.026 14 C -0.012 4.012 15 N -0.211 5.211 16 C -0.096 4.096 17 C -0.044 4.044 18 C -0.167 4.167 19 C -0.176 4.176 20 C -0.165 4.165 21 N -0.096 5.096 22 O 0.017 5.983 23 C -0.098 4.098 24 H 0.082 0.918 25 H 0.201 0.799 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.100 0.900 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.087 -2.265 -9.971 20.777 hybrid contribution -1.033 -1.478 -0.455 1.860 sum 17.053 -3.742 -10.426 20.335 Atomic orbital electron populations 1.70792 1.06764 1.30788 1.44581 1.25793 0.96430 1.02576 0.92310 0.84245 0.75471 0.76004 0.77846 1.20176 1.19603 1.20959 1.22363 0.89581 0.95841 1.56954 0.91399 1.20407 0.92230 0.88241 0.82657 1.86459 1.77977 1.20924 1.50925 1.25425 0.93088 0.95773 1.02458 1.68634 1.36416 1.07446 1.07358 1.21237 0.91024 0.98234 0.92082 1.28730 0.94964 0.88477 0.89007 1.71888 1.02770 1.25221 1.21183 1.25619 0.99370 0.92894 0.91745 1.21013 0.84510 0.99940 0.98987 1.23024 0.99262 0.95157 0.99286 1.22823 0.97553 0.97631 0.99545 1.22973 0.99121 0.99626 0.94800 1.74509 0.90991 1.22185 1.21941 1.85294 1.26178 1.47312 1.39492 1.23988 0.92417 0.97633 0.95771 0.91806 0.79914 0.90141 0.90185 0.86798 0.89991 0.86330 0.89259 0.90613 0.89663 0.90805 0.90643 0.89658 0.89523 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.06 13.70 55.43 0.76 -25.30 16 2 C 0.04 0.97 5.47 -17.82 -0.10 0.88 16 3 Si 1.04 23.26 24.77 -169.99 -4.21 19.05 16 4 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.27 -5.51 4.71 56.52 0.27 -5.24 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.61 -16.03 9.05 -34.44 -0.31 -16.34 16 8 H 0.07 1.89 8.04 -52.49 -0.42 1.47 16 9 C 0.21 4.71 1.06 -90.83 -0.10 4.61 16 10 O -0.55 -13.16 13.26 -35.23 -0.47 -13.62 16 11 C -0.04 -0.79 6.21 -2.63 -0.02 -0.80 16 12 N -0.47 -8.81 6.14 -239.47 -1.47 -10.29 16 13 C 0.10 1.57 5.43 -4.98 -0.03 1.54 16 14 C 0.21 3.38 8.07 -13.06 -0.11 3.28 16 15 N -0.48 -7.87 11.55 -9.87 -0.11 -7.98 16 16 C 0.18 2.66 7.26 -156.37 -1.14 1.52 16 17 C -0.02 -0.27 4.28 -90.96 -0.39 -0.66 16 18 C -0.13 -1.26 7.63 -25.83 -0.20 -1.45 16 19 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 20 C -0.13 -1.15 7.63 -25.92 -0.20 -1.35 16 21 N -0.39 -6.25 11.80 30.90 0.36 -5.89 16 22 O 0.07 1.23 11.31 18.12 0.20 1.44 16 23 C 0.03 0.57 7.34 -2.76 -0.02 0.55 16 24 H 0.27 7.83 8.71 -40.82 -0.36 7.47 16 25 H 0.35 7.76 4.33 45.56 0.20 7.96 16 26 H 0.08 1.58 7.44 -51.93 -0.39 1.19 16 27 H 0.08 1.66 6.55 -51.93 -0.34 1.32 16 28 H 0.11 1.48 8.08 -51.92 -0.42 1.06 16 29 H 0.08 1.10 7.39 -51.93 -0.38 0.72 16 30 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.09 0.99 7.81 -51.93 -0.41 0.59 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 38 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -30.52 312.14 -7.84 -38.37 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.81 Total: 9.01 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -2.80 Total: -9.48 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.46 Total: -49.45 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.26 Total: -12.19 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.21 Total: 19.05 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.52 -7.84 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.204 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds