Wall clock time and date at job start Wed Apr 15 2020 11:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46494 * 112.85046 * 137.33399 * 3 2 1 5 5 C 1.34773 * 120.00052 * 50.32819 * 4 3 2 6 6 O 1.21282 * 120.00418 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00164 * 179.97438 * 5 4 3 8 8 N 1.46904 * 109.47392 * 180.02562 * 7 5 4 9 9 C 1.47960 * 110.99975 * 190.00152 * 8 7 5 10 10 C 1.53940 * 86.18020 * 222.41827 * 9 8 7 11 11 O 1.42900 * 113.73337 * 269.26005 * 10 9 8 12 12 C 1.50694 * 113.73364 * 138.08016 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.89939 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.90102 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.48189 * 111.06803 * 90.56563 * 8 7 5 21 21 C 1.53778 * 113.61077 * 268.53029 * 3 2 1 22 22 C 1.53953 * 87.02141 * 89.22833 * 21 3 2 23 23 C 1.53783 * 87.11202 * 25.36151 * 22 21 3 24 24 H 0.97002 * 120.00084 * 230.33692 * 4 3 2 25 25 H 1.09003 * 109.46888 * 60.00332 * 7 5 4 26 26 H 1.09005 * 109.47315 * 300.00654 * 7 5 4 27 27 H 1.09000 * 113.75922 * 108.10132 * 9 8 7 28 28 H 1.08996 * 113.85941 * 336.74802 * 9 8 7 29 29 H 0.96699 * 113.99865 * 178.10203 * 11 10 9 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.08996 * 113.76245 * 23.24297 * 20 8 7 32 32 H 1.08999 * 113.82580 * 251.80952 * 20 8 7 33 33 H 1.09005 * 113.61398 * 203.75051 * 21 3 2 34 34 H 1.09003 * 113.62029 * 334.64983 * 21 3 2 35 35 H 1.08994 * 113.53860 * 270.80802 * 22 21 3 36 36 H 1.09003 * 113.74320 * 139.94083 * 22 21 3 37 37 H 1.08991 * 113.61375 * 220.09016 * 23 22 21 38 38 H 1.08996 * 113.68869 * 89.19414 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.1765 0.9936 -0.9149 5 6 2.7510 2.2716 -0.8713 6 8 1.8978 2.5999 -0.0743 7 6 3.3361 3.2932 -1.8120 8 7 2.7113 4.5998 -1.5664 9 6 3.0805 5.5706 -2.6201 10 6 3.2544 6.5879 -1.4779 11 8 2.0686 7.3281 -1.1814 12 6 4.4718 7.4637 -1.6259 13 1 5.1079 7.3623 -2.4928 14 6 4.7736 8.3945 -0.6545 15 7 3.9988 8.5184 0.4009 16 14 6.2831 9.4796 -0.8376 17 1 7.4517 8.8122 -0.2097 18 1 6.5580 9.7061 -2.2793 19 1 6.0395 10.7832 -0.1693 20 6 3.4730 5.3733 -0.5577 21 6 3.2239 0.0371 1.4086 22 6 3.1736 -1.5014 1.3830 23 6 3.2247 -1.4001 -0.1506 24 1 3.8591 0.7312 -1.5522 25 1 3.1487 2.9883 -2.8416 26 1 4.4107 3.3675 -1.6450 27 1 2.2643 5.8107 -3.3015 28 1 4.0087 5.3281 -3.1374 29 1 2.1654 7.9477 -0.4453 30 1 4.2114 9.1730 1.0845 31 1 4.5166 5.0716 -0.4692 32 1 2.9699 5.4561 0.4057 33 1 4.2363 0.4405 1.4322 34 1 2.5717 0.4838 2.1590 35 1 2.2383 -1.9127 1.7626 36 1 4.0526 -1.9766 1.8187 37 1 2.5730 -2.1119 -0.6571 38 1 4.2366 -1.3904 -0.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473415008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:39 Heat of formation + Delta-G solvation = 14.075140 kcal Electronic energy + Delta-G solvation = -21697.570639 eV Core-core repulsion = 18349.710820 eV Total energy + Delta-G solvation = -3347.859820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66550 -39.18863 -37.87605 -35.83692 -34.18779 -33.51760 -32.07359 -29.67509 -26.70918 -26.23000 -25.51735 -25.08057 -22.71568 -21.59961 -20.18723 -18.65491 -17.86037 -17.27955 -16.88390 -16.28307 -15.35961 -15.15358 -14.94547 -14.80084 -14.21415 -14.02788 -13.71284 -13.63884 -13.03691 -12.88418 -12.73998 -12.46971 -12.03724 -11.98439 -11.85096 -11.76571 -11.51414 -11.20964 -11.15771 -10.92012 -10.83275 -10.71275 -10.39804 -10.02228 -9.51495 -9.31869 -9.30270 -8.64719 -8.22408 -7.79063 -6.25374 -4.36298 2.37595 2.61082 2.81938 3.18394 3.26622 3.29101 3.30418 3.60686 4.05804 4.17604 4.24961 4.46112 4.70093 4.83230 4.98285 5.10638 5.21295 5.28826 5.40621 5.46675 5.54090 5.58207 5.70919 5.83840 5.89133 5.99683 6.26599 6.29914 6.34803 6.67150 7.08490 7.16197 7.31480 7.39908 7.52445 7.75831 7.91395 8.00672 8.38678 8.65629 9.33953 9.65438 10.80498 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029301 B = 0.003819 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.365083 B = 7329.612819 C = 7624.281826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.224 3.776 3 C 0.245 3.755 4 N -0.726 5.726 5 C 0.513 3.487 6 O -0.497 6.497 7 C 0.002 3.998 8 N -0.460 5.460 9 C 0.008 3.992 10 C 0.245 3.755 11 O -0.570 6.570 12 C -0.540 4.540 13 H 0.066 0.934 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.272 1.272 19 H -0.284 1.284 20 C -0.007 4.007 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.124 4.124 24 H 0.408 0.592 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.388 0.612 30 H 0.271 0.729 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.653 -18.837 -1.214 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.096 4.096 3 C 0.154 3.846 4 N -0.384 5.384 5 C 0.299 3.701 6 O -0.367 6.367 7 C -0.131 4.131 8 N -0.183 5.183 9 C -0.120 4.120 10 C 0.203 3.797 11 O -0.381 6.381 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.197 1.197 19 H -0.209 1.209 20 C -0.136 4.136 21 C -0.170 4.170 22 C -0.179 4.179 23 C -0.163 4.163 24 H 0.244 0.756 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.242 0.758 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.330 -18.946 -0.847 19.108 hybrid contribution 2.683 0.859 -0.068 2.818 sum 5.013 -18.087 -0.915 18.791 Atomic orbital electron populations 1.81160 1.12399 1.07753 1.06916 1.28215 0.93957 0.93381 0.94076 1.18499 0.81588 0.90983 0.93511 1.46121 1.43833 1.08088 1.40328 1.21033 0.82236 0.82174 0.84613 1.90748 1.29908 1.78904 1.37178 1.22592 0.98306 0.93739 0.98423 1.68522 1.45492 0.97561 1.06716 1.24193 0.98957 0.92763 0.96100 1.19719 0.84336 0.87288 0.88313 1.86055 1.35842 1.58467 1.57751 1.21630 1.09321 1.19962 1.06953 0.91626 1.25070 0.97003 0.96536 0.94489 1.69443 1.38375 1.35671 1.09985 0.86425 0.82338 0.79776 0.78461 1.20477 1.19679 1.20920 1.24811 0.94801 0.96226 0.97751 1.23433 1.02482 0.96552 0.94536 1.22849 1.03435 0.96346 0.95249 1.23291 1.02101 0.92655 0.98222 0.75634 0.88845 0.91117 0.90417 0.91542 0.75780 0.91886 0.92320 0.90620 0.87683 0.89982 0.89643 0.89622 0.89871 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.02 18.54 42.15 0.78 -6.24 16 2 C 0.22 3.23 12.65 -20.76 -0.26 2.96 16 3 C 0.24 2.48 1.18 -133.79 -0.16 2.32 16 4 N -0.73 -7.60 5.31 -49.46 -0.26 -7.86 16 5 C 0.51 8.15 7.62 -10.99 -0.08 8.07 16 6 O -0.50 -10.45 15.19 5.56 0.08 -10.37 16 7 C 0.00 0.02 5.28 -4.97 -0.03 0.00 16 8 N -0.46 -9.83 5.65 -239.46 -1.35 -11.19 16 9 C 0.01 0.18 7.34 -2.76 -0.02 0.16 16 10 C 0.25 6.24 1.40 -90.83 -0.13 6.11 16 11 O -0.57 -15.89 13.48 -35.23 -0.48 -16.36 16 12 C -0.54 -14.23 8.61 -34.44 -0.30 -14.52 16 13 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.07 1.87 5.40 -17.82 -0.10 1.78 16 15 N -0.89 -24.16 11.20 55.43 0.62 -23.54 16 16 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.01 -0.17 7.36 -2.63 -0.02 -0.18 16 21 C -0.13 -1.16 7.45 -25.83 -0.19 -1.35 16 22 C -0.14 -0.84 7.80 -25.83 -0.20 -1.04 16 23 C -0.12 -0.69 7.34 -25.92 -0.19 -0.88 16 24 H 0.41 2.58 8.64 -40.82 -0.35 2.23 16 25 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 26 H 0.07 0.98 7.39 -51.93 -0.38 0.60 16 27 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 28 H 0.07 1.26 7.88 -51.93 -0.41 0.85 16 29 H 0.39 10.95 6.60 45.56 0.30 11.25 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.06 1.31 7.44 -51.93 -0.39 0.93 16 32 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 38 H 0.11 0.33 8.13 -51.93 -0.42 -0.09 16 LS Contribution 326.78 15.07 4.92 4.92 Total: -1.00 -34.25 326.78 -6.94 -41.20 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.57 Total: 10.93 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.67 Total: 3.41 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.21 Total: -48.82 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.39 Total: -26.73 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.25 -6.94 -41.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473415008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.273 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds