Wall clock time and date at job start Wed Apr 15 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48507 * 109.46872 * 359.97438 * 3 2 1 5 5 H 1.48491 * 109.47279 * 119.99753 * 3 2 1 6 6 H 1.48500 * 109.47074 * 239.99938 * 3 2 1 7 7 C 1.37878 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47220 * 300.00106 * 9 7 2 11 11 O 1.42902 * 109.47265 * 59.99849 * 9 7 2 12 12 C 1.53004 * 109.47276 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.46996 * 180.02562 * 12 9 7 14 14 C 1.46900 * 111.00117 * 174.99650 * 13 12 9 15 15 C 1.50694 * 112.84890 * 66.24313 * 14 13 12 16 16 C 1.38223 * 120.01209 * 6.33883 * 15 14 13 17 17 C 1.38225 * 120.02085 * 179.71780 * 16 15 14 18 18 C 1.38264 * 120.05678 * 0.55158 * 17 16 15 19 19 C 1.38178 * 120.02381 * 359.72354 * 18 17 16 20 20 C 1.38445 * 120.01448 * 186.60672 * 15 14 13 21 21 F 1.35098 * 120.02491 * 0.02564 * 20 15 14 22 22 C 1.53782 * 113.61200 * 295.05426 * 14 13 12 23 23 C 1.54050 * 86.98552 * 270.83422 * 22 14 13 24 24 C 1.53780 * 113.61631 * 197.44434 * 14 13 12 25 25 H 0.96997 * 119.99734 * 179.97438 * 1 2 3 26 26 H 0.96706 * 113.99694 * 59.99637 * 11 9 7 27 27 H 1.09003 * 109.46926 * 299.99947 * 12 9 7 28 28 H 1.08999 * 109.47155 * 60.00058 * 12 9 7 29 29 H 1.00897 * 111.00151 * 298.94969 * 13 12 9 30 30 H 1.07999 * 119.99052 * 359.97438 * 16 15 14 31 31 H 1.08006 * 119.96910 * 180.27064 * 17 16 15 32 32 H 1.07998 * 119.99137 * 179.74911 * 18 17 16 33 33 H 1.07998 * 120.01284 * 180.02562 * 19 18 17 34 34 H 1.09000 * 113.61843 * 25.42469 * 22 14 13 35 35 H 1.09005 * 113.61719 * 156.33591 * 22 14 13 36 36 H 1.08996 * 113.62383 * 220.02267 * 23 22 14 37 37 H 1.09002 * 113.61469 * 89.11551 * 23 22 14 38 38 H 1.09000 * 113.61500 * 203.66079 * 24 14 13 39 39 H 1.08996 * 113.61326 * 334.56647 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8902 11 8 0.4299 -2.5752 -1.1665 12 6 2.2453 -3.6621 0.0018 13 7 1.5108 -4.9343 0.0012 14 6 2.4308 -6.0733 -0.1172 15 6 3.3260 -6.2299 1.0849 16 6 3.1361 -5.4313 2.1970 17 6 3.9534 -5.5788 3.3019 18 6 4.9689 -6.5171 3.2919 19 6 5.1642 -7.3126 2.1791 20 6 4.3424 -7.1698 1.0737 21 9 4.5327 -7.9468 -0.0150 22 6 3.1846 -6.1196 -1.4568 23 6 2.0045 -6.9480 -1.9993 24 6 1.7420 -7.3795 -0.5467 25 1 -0.4849 -0.8400 -0.0004 26 1 0.9224 -2.5299 -1.9976 27 1 2.8726 -3.6048 -0.8877 28 1 2.8713 -3.6040 0.8923 29 1 0.9342 -5.0193 0.8248 30 1 2.3463 -4.6948 2.2042 31 1 3.8015 -4.9573 4.1721 32 1 5.6094 -6.6286 4.1542 33 1 5.9572 -8.0457 2.1716 34 1 3.2904 -5.1445 -1.9323 35 1 4.1224 -6.6735 -1.4113 36 1 2.3089 -7.7677 -2.6500 37 1 1.2053 -6.3420 -2.4259 38 1 2.2861 -8.2771 -0.2528 39 1 0.6840 -7.4207 -0.2878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:48 Heat of formation + Delta-G solvation = -45.650780 kcal Electronic energy + Delta-G solvation = -22388.651093 eV Core-core repulsion = 19018.281402 eV Total energy + Delta-G solvation = -3370.369692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.05411 -40.15379 -38.00307 -36.21254 -33.26718 -32.05753 -30.88037 -30.45158 -27.75912 -25.67031 -24.94888 -23.46793 -22.56013 -21.62766 -20.85329 -18.91109 -17.82170 -17.19464 -16.59008 -16.06974 -15.75223 -15.51910 -15.00249 -14.59220 -14.49976 -13.86455 -13.76344 -13.56635 -13.48782 -12.95382 -12.68352 -12.33351 -12.14054 -12.03878 -11.85934 -11.40659 -11.26226 -11.12742 -10.78350 -10.47356 -10.31687 -10.15340 -10.10712 -10.03720 -9.22191 -8.97864 -8.62508 -8.47366 -8.09365 -7.89894 -6.34976 -4.18684 1.09564 1.13970 3.41433 3.42682 3.50409 3.61966 4.17819 4.35733 4.53575 4.62231 4.67046 4.79353 4.87699 4.99986 5.06032 5.18279 5.32142 5.36172 5.49592 5.77345 5.83218 5.89058 5.97476 5.99428 6.02375 6.05162 6.10288 6.17889 6.22916 6.31523 6.34641 6.51881 6.59433 6.72493 6.82965 7.43072 7.46856 7.76985 8.03012 8.35624 8.86336 9.22317 9.67715 11.05112 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.005241 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.620303 B = 5341.474637 C = 6203.150588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.036 3.964 3 Si 1.065 2.935 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.651 4.651 8 H 0.047 0.953 9 C 0.221 3.779 10 H 0.043 0.957 11 O -0.571 6.571 12 C 0.033 3.967 13 N -0.647 5.647 14 C 0.125 3.875 15 C -0.124 4.124 16 C -0.091 4.091 17 C -0.125 4.125 18 C -0.100 4.100 19 C -0.156 4.156 20 C 0.100 3.900 21 F -0.135 7.135 22 C -0.137 4.137 23 C -0.122 4.122 24 C -0.123 4.123 25 H 0.285 0.715 26 H 0.352 0.648 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.337 0.663 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 -15.451 3.584 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.173 4.173 3 Si 0.893 3.107 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.689 4.689 8 H 0.066 0.934 9 C 0.163 3.837 10 H 0.061 0.939 11 O -0.375 6.375 12 C -0.095 4.095 13 N -0.276 5.276 14 C 0.033 3.967 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.143 4.143 18 C -0.118 4.118 19 C -0.175 4.175 20 C 0.080 3.920 21 F -0.113 7.113 22 C -0.175 4.175 23 C -0.160 4.160 24 C -0.160 4.160 25 H 0.097 0.903 26 H 0.196 0.804 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.783 -13.854 3.314 16.233 hybrid contribution 1.356 -1.698 0.527 2.236 sum 9.139 -15.552 3.841 18.443 Atomic orbital electron populations 1.70632 1.06896 1.32319 1.42769 1.25748 0.96490 1.02353 0.92753 0.83623 0.74966 0.75578 0.76487 1.20716 1.21532 1.21439 1.22411 0.94298 0.92573 1.59641 0.93444 1.19438 0.88169 0.90409 0.85671 0.93918 1.86459 1.38730 1.96499 1.15783 1.22939 0.97449 0.88861 1.00251 1.60546 1.21259 1.00448 1.45396 1.21043 0.91890 0.93383 0.90418 1.20830 0.97397 0.96223 0.98229 1.21168 0.99814 0.97897 0.92070 1.21232 0.95721 0.98642 0.98686 1.20969 0.97898 0.95367 0.97608 1.21104 1.00727 1.02369 0.93330 1.17463 0.97368 0.92824 0.84308 1.91398 1.94611 1.73069 1.52270 1.23299 0.98117 1.01405 0.94646 1.22665 0.98625 0.99100 0.95563 1.22971 1.00792 0.95242 0.97028 0.90348 0.80383 0.91655 0.94883 0.84357 0.84684 0.85315 0.85262 0.85044 0.90777 0.89079 0.92179 0.89246 0.90204 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.53 55.43 0.75 -26.33 16 2 C 0.04 1.01 5.40 -17.82 -0.10 0.91 16 3 Si 1.07 24.90 29.90 -169.99 -5.08 19.82 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.65 -17.89 8.76 -34.44 -0.30 -18.19 16 8 H 0.05 1.30 7.74 -52.48 -0.41 0.89 16 9 C 0.22 5.44 2.68 -27.88 -0.07 5.36 16 10 H 0.04 1.13 8.01 -51.93 -0.42 0.72 16 11 O -0.57 -14.38 11.88 -35.23 -0.42 -14.80 16 12 C 0.03 0.67 4.44 -3.82 -0.02 0.65 16 13 N -0.65 -11.18 5.85 -100.31 -0.59 -11.76 16 14 C 0.13 1.89 0.94 -131.94 -0.12 1.77 16 15 C -0.12 -1.80 5.08 -104.55 -0.53 -2.33 16 16 C -0.09 -1.30 7.83 -39.59 -0.31 -1.61 16 17 C -0.12 -1.51 10.04 -39.58 -0.40 -1.91 16 18 C -0.10 -1.08 10.04 -39.59 -0.40 -1.47 16 19 C -0.16 -1.79 10.03 -39.51 -0.40 -2.19 16 20 C 0.10 1.35 6.69 -39.42 -0.26 1.09 16 21 F -0.13 -1.82 12.90 2.25 0.03 -1.79 16 22 C -0.14 -2.04 6.81 -25.78 -0.18 -2.21 16 23 C -0.12 -1.66 8.00 -25.77 -0.21 -1.87 16 24 C -0.12 -1.66 7.13 -25.92 -0.18 -1.85 16 25 H 0.28 8.81 6.47 -40.82 -0.26 8.54 16 26 H 0.35 8.17 9.04 45.56 0.41 8.59 16 27 H 0.07 1.36 6.44 -51.93 -0.33 1.02 16 28 H 0.03 0.66 5.42 -51.93 -0.28 0.38 16 29 H 0.34 5.70 7.75 -39.29 -0.30 5.40 16 30 H 0.14 2.05 5.32 -52.49 -0.28 1.77 16 31 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.07 1.20 6.58 -51.93 -0.34 0.86 16 35 H 0.09 1.30 5.48 -51.93 -0.28 1.01 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.08 1.03 6.65 -51.93 -0.35 0.68 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -30.20 312.76 -8.25 -38.46 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -4.18 Total: 15.55 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -3.48 Total: -23.85 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.16 Total: -38.10 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.42 Total: -14.80 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.20 -8.25 -38.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.196 kcal (2) G-P(sol) polarization free energy of solvation -30.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds