Wall clock time and date at job start Wed Apr 15 2020 11:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48507 * 109.46872 * 359.97438 * 3 2 1 5 5 H 1.48491 * 109.47279 * 119.99753 * 3 2 1 6 6 H 1.48500 * 109.47074 * 239.99938 * 3 2 1 7 7 C 1.37878 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00136 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47220 * 300.00106 * 9 7 2 11 11 O 1.42902 * 109.47265 * 59.99849 * 9 7 2 12 12 C 1.53004 * 109.47276 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.46996 * 180.02562 * 12 9 7 14 14 C 1.46900 * 111.00117 * 174.99650 * 13 12 9 15 15 C 1.50694 * 112.84890 * 66.24313 * 14 13 12 16 16 C 1.38223 * 120.01209 * 6.33883 * 15 14 13 17 17 C 1.38225 * 120.02085 * 179.71780 * 16 15 14 18 18 C 1.38264 * 120.05678 * 0.55158 * 17 16 15 19 19 C 1.38178 * 120.02381 * 359.72354 * 18 17 16 20 20 C 1.38445 * 120.01448 * 186.60672 * 15 14 13 21 21 F 1.35098 * 120.02491 * 0.02564 * 20 15 14 22 22 C 1.53782 * 113.61200 * 295.05426 * 14 13 12 23 23 C 1.54050 * 86.98552 * 270.83422 * 22 14 13 24 24 C 1.53780 * 113.61631 * 197.44434 * 14 13 12 25 25 H 0.96997 * 119.99734 * 179.97438 * 1 2 3 26 26 H 0.96706 * 113.99694 * 59.99637 * 11 9 7 27 27 H 1.09003 * 109.46926 * 299.99947 * 12 9 7 28 28 H 1.08999 * 109.47155 * 60.00058 * 12 9 7 29 29 H 1.00897 * 111.00151 * 298.94969 * 13 12 9 30 30 H 1.07999 * 119.99052 * 359.97438 * 16 15 14 31 31 H 1.08006 * 119.96910 * 180.27064 * 17 16 15 32 32 H 1.07998 * 119.99137 * 179.74911 * 18 17 16 33 33 H 1.07998 * 120.01284 * 180.02562 * 19 18 17 34 34 H 1.09000 * 113.61843 * 25.42469 * 22 14 13 35 35 H 1.09005 * 113.61719 * 156.33591 * 22 14 13 36 36 H 1.08996 * 113.62383 * 220.02267 * 23 22 14 37 37 H 1.09002 * 113.61469 * 89.11551 * 23 22 14 38 38 H 1.09000 * 113.61500 * 203.66079 * 24 14 13 39 39 H 1.08996 * 113.61326 * 334.56647 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8902 11 8 0.4299 -2.5752 -1.1665 12 6 2.2453 -3.6621 0.0018 13 7 1.5108 -4.9343 0.0012 14 6 2.4308 -6.0733 -0.1172 15 6 3.3260 -6.2299 1.0849 16 6 3.1361 -5.4313 2.1970 17 6 3.9534 -5.5788 3.3019 18 6 4.9689 -6.5171 3.2919 19 6 5.1642 -7.3126 2.1791 20 6 4.3424 -7.1698 1.0737 21 9 4.5327 -7.9468 -0.0150 22 6 3.1846 -6.1196 -1.4568 23 6 2.0045 -6.9480 -1.9993 24 6 1.7420 -7.3795 -0.5467 25 1 -0.4849 -0.8400 -0.0004 26 1 0.9224 -2.5299 -1.9976 27 1 2.8726 -3.6048 -0.8877 28 1 2.8713 -3.6040 0.8923 29 1 0.9342 -5.0193 0.8248 30 1 2.3463 -4.6948 2.2042 31 1 3.8015 -4.9573 4.1721 32 1 5.6094 -6.6286 4.1542 33 1 5.9572 -8.0457 2.1716 34 1 3.2904 -5.1445 -1.9323 35 1 4.1224 -6.6735 -1.4113 36 1 2.3089 -7.7677 -2.6500 37 1 1.2053 -6.3420 -2.4259 38 1 2.2861 -8.2771 -0.2528 39 1 0.6840 -7.4207 -0.2878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:48 Heat of formation + Delta-G solvation = -65.716861 kcal Electronic energy + Delta-G solvation = -22389.521224 eV Core-core repulsion = 19018.281402 eV Total energy + Delta-G solvation = -3371.239822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.05969 -41.30503 -39.04983 -38.12189 -34.76901 -34.21097 -31.98302 -31.41075 -29.56271 -26.93015 -26.32775 -25.14557 -23.55802 -22.77281 -22.62275 -20.14455 -19.27364 -18.85108 -17.66517 -17.21087 -17.10279 -16.75608 -16.40729 -15.90159 -15.72938 -15.57522 -15.36829 -15.10356 -14.65831 -14.22783 -14.16220 -13.96202 -13.50311 -13.20682 -13.03744 -12.86037 -12.63293 -12.59991 -12.21201 -12.10816 -11.94172 -11.62116 -11.48399 -11.32914 -11.15479 -10.63532 -10.07712 -9.97192 -9.61327 -9.40346 -8.61273 -6.46270 0.12553 0.17608 1.52547 1.59846 1.79568 2.54116 2.55082 2.99599 3.17794 3.26483 3.53619 3.60799 3.71121 3.80847 3.91390 4.02914 4.08976 4.27037 4.29900 4.34756 4.37657 4.53332 4.73117 4.75663 4.83619 4.89779 5.01413 5.03682 5.04808 5.08503 5.20910 5.34077 5.39039 5.44955 5.48531 5.83525 5.88909 6.02960 6.17523 6.34496 6.57274 7.22698 7.50994 8.76542 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.005241 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.620303 B = 5341.474637 C = 6203.150588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.015 4.015 3 Si 1.114 2.886 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.659 4.659 8 H 0.047 0.953 9 C 0.221 3.779 10 H 0.017 0.983 11 O -0.581 6.581 12 C 0.059 3.941 13 N -0.649 5.649 14 C 0.119 3.881 15 C -0.140 4.140 16 C -0.114 4.114 17 C -0.128 4.128 18 C -0.091 4.091 19 C -0.151 4.151 20 C 0.086 3.914 21 F -0.137 7.137 22 C -0.138 4.138 23 C -0.116 4.116 24 C -0.113 4.113 25 H 0.268 0.732 26 H 0.359 0.641 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.338 0.662 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 -16.522 4.346 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.935 3.065 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.697 4.697 8 H 0.066 0.934 9 C 0.163 3.837 10 H 0.035 0.965 11 O -0.386 6.386 12 C -0.070 4.070 13 N -0.279 5.279 14 C 0.027 3.973 15 C -0.143 4.143 16 C -0.132 4.132 17 C -0.146 4.146 18 C -0.109 4.109 19 C -0.170 4.170 20 C 0.067 3.933 21 F -0.116 7.116 22 C -0.176 4.176 23 C -0.154 4.154 24 C -0.151 4.151 25 H 0.078 0.922 26 H 0.204 0.796 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.003 -14.958 4.073 18.450 hybrid contribution 0.693 -1.447 0.328 1.637 sum 10.696 -16.405 4.402 20.072 Atomic orbital electron populations 1.70776 1.07998 1.31249 1.45513 1.27246 0.96471 1.06325 0.91697 0.82999 0.74156 0.71438 0.77896 1.21042 1.19503 1.19621 1.22787 0.94496 0.93906 1.58526 0.93441 1.19323 0.88217 0.91543 0.84589 0.96479 1.86415 1.39281 1.96604 1.16273 1.22437 0.95909 0.88769 0.99846 1.60434 1.21726 1.00195 1.45508 1.21094 0.92030 0.92977 0.91174 1.20733 0.98199 0.97409 0.97981 1.21129 1.00472 0.98272 0.93306 1.21506 0.95550 0.99151 0.98408 1.21384 0.97244 0.93813 0.98417 1.21479 1.00518 1.02508 0.92477 1.17618 0.97726 0.92904 0.85066 1.91384 1.94625 1.73035 1.52507 1.23318 0.98966 1.00732 0.94560 1.22612 0.97533 0.99243 0.95965 1.22937 1.00724 0.94773 0.96684 0.92171 0.79574 0.92376 0.94842 0.84310 0.86610 0.83690 0.81641 0.82286 0.92711 0.88215 0.90071 0.90684 0.89020 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.06 13.53 21.45 0.29 -56.77 16 2 C -0.02 -0.87 5.40 84.65 0.46 -0.41 16 3 Si 1.11 49.78 29.90 68.60 2.05 51.83 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.66 -36.70 8.76 25.60 0.22 -36.48 16 8 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 9 C 0.22 11.23 2.68 29.85 0.08 11.31 16 10 H 0.02 0.96 8.01 -2.39 -0.02 0.95 16 11 O -0.58 -30.20 11.88 -148.98 -1.77 -31.97 16 12 C 0.06 2.45 4.44 86.31 0.38 2.83 16 13 N -0.65 -23.01 5.85 -471.28 -2.76 -25.76 16 14 C 0.12 3.59 0.94 3.31 0.00 3.59 16 15 C -0.14 -3.99 5.08 -19.82 -0.10 -4.09 16 16 C -0.11 -3.21 7.83 22.26 0.17 -3.03 16 17 C -0.13 -2.86 10.04 22.27 0.22 -2.64 16 18 C -0.09 -1.63 10.04 22.26 0.22 -1.41 16 19 C -0.15 -2.98 10.03 22.31 0.22 -2.75 16 20 C 0.09 2.17 6.69 22.38 0.15 2.32 16 21 F -0.14 -3.41 12.90 44.97 0.58 -2.83 16 22 C -0.14 -4.05 6.81 31.21 0.21 -3.84 16 23 C -0.12 -3.06 8.00 31.21 0.25 -2.81 16 24 C -0.11 -2.98 7.13 31.12 0.22 -2.76 16 25 H 0.27 17.17 6.47 -92.71 -0.60 16.57 16 26 H 0.36 17.15 9.04 -74.05 -0.67 16.48 16 27 H 0.06 2.47 6.44 -2.39 -0.02 2.45 16 28 H 0.03 1.38 5.42 -2.39 -0.01 1.37 16 29 H 0.34 11.89 7.75 -89.70 -0.70 11.19 16 30 H 0.12 3.64 5.32 -2.91 -0.02 3.63 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 34 H 0.05 1.80 6.58 -2.39 -0.02 1.78 16 35 H 0.10 2.74 5.48 -2.38 -0.01 2.73 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.09 2.21 6.65 -2.39 -0.02 2.19 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -65.51 312.76 1.02 -64.50 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.10 Total: 41.16 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 2.73 Total: -40.15 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.47 Total: -82.53 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.77 Total: -31.97 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.58 Total: -2.83 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -65.51 1.02 -64.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.222 kcal (2) G-P(sol) polarization free energy of solvation -65.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds