Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 120.00203 * 2 1 4 4 H 1.48504 * 109.46793 * 239.99907 * 3 2 1 5 5 H 1.48496 * 109.47012 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47358 * 119.99646 * 3 2 1 7 7 C 1.39935 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99681 * 192.52420 * 7 2 1 9 9 C 1.41426 * 120.00021 * 12.52972 * 7 2 1 10 10 C 1.40784 * 120.18568 * 28.70926 * 9 7 2 11 11 C 1.37679 * 119.98589 * 180.02562 * 10 9 7 12 12 C 1.38440 * 120.37914 * 359.72796 * 11 10 9 13 13 C 1.39679 * 120.37896 * 0.55055 * 12 11 10 14 14 C 1.48415 * 120.00130 * 179.72301 * 13 12 11 15 15 C 1.39179 * 119.94818 * 55.39939 * 14 13 12 16 16 C 1.38003 * 119.69288 * 180.02562 * 15 14 13 17 17 C 1.38135 * 119.99781 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.63686 * 0.02562 * 17 16 15 19 19 C 1.37660 * 119.79893 * 359.86327 * 18 17 16 20 20 C 1.50700 * 121.72313 * 180.22670 * 19 18 17 21 21 C 1.52900 * 109.97224 * 343.27875 * 20 19 18 22 22 N 1.47162 * 108.49318 * 50.27576 * 21 20 19 23 23 C 1.46627 * 110.23558 * 288.76414 * 22 21 20 24 24 C 1.38767 * 119.99914 * 359.45027 * 13 12 11 25 25 H 0.97002 * 120.00225 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00895 * 0.04327 * 10 9 7 27 27 H 1.08001 * 119.81147 * 180.02562 * 11 10 9 28 28 H 1.08004 * 119.80447 * 180.27467 * 12 11 10 29 29 H 1.07996 * 120.15446 * 359.97438 * 15 14 13 30 30 H 1.08000 * 120.00295 * 180.02562 * 16 15 14 31 31 H 1.08005 * 119.67740 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.38783 * 223.13207 * 20 19 18 33 33 H 1.08993 * 109.30372 * 103.38413 * 20 19 18 34 34 H 1.09000 * 109.63745 * 290.57208 * 21 20 19 35 35 H 1.08999 * 109.79773 * 170.07247 * 21 20 19 36 36 H 1.00903 * 111.00059 * 52.16818 * 22 21 20 37 37 H 1.09000 * 109.30312 * 172.88762 * 23 22 21 38 38 H 1.09009 * 109.29836 * 292.26199 * 23 22 21 39 39 H 1.08007 * 120.18544 * 180.29626 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0686 -1.2229 0.2034 9 6 1.3260 -2.4222 -0.2646 10 6 0.1812 -2.4248 -1.0841 11 6 -0.4798 -3.6053 -1.3391 12 6 -0.0222 -4.7948 -0.7984 13 6 1.1086 -4.8093 0.0214 14 6 1.5882 -6.0884 0.6016 15 6 1.8754 -7.1651 -0.2322 16 6 2.3206 -8.3522 0.3130 17 6 2.4786 -8.4678 1.6804 18 6 2.1932 -7.3988 2.5183 19 6 1.7508 -6.2098 1.9838 20 6 1.4330 -5.0201 2.8525 21 6 1.2725 -5.4635 4.3070 22 7 2.4382 -6.2821 4.6768 23 6 2.3794 -7.5824 4.0019 24 6 1.7869 -3.6287 0.2888 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1783 -1.5011 -1.5128 27 1 -1.3575 -3.6042 -1.9684 28 1 -0.5453 -5.7162 -1.0081 29 1 1.7498 -7.0724 -1.3008 30 1 2.5453 -9.1908 -0.3294 31 1 2.8269 -9.3994 2.1015 32 1 0.5063 -4.5594 2.5104 33 1 2.2445 -4.2958 2.7825 34 1 0.3623 -6.0539 4.4116 35 1 1.2184 -4.5892 4.9557 36 1 3.2996 -5.8022 4.4627 37 1 3.3068 -8.1253 4.1842 38 1 1.5442 -8.1581 4.4010 39 1 2.6644 -3.6371 0.9184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236348609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = 30.063382 kcal Electronic energy + Delta-G solvation = -20933.300319 eV Core-core repulsion = 17996.983065 eV Total energy + Delta-G solvation = -2936.317254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98713 -37.51122 -36.25292 -33.90204 -32.53922 -30.57322 -29.92044 -29.65095 -27.62966 -25.28058 -24.18048 -23.10171 -22.33298 -20.62274 -19.97916 -19.67821 -17.23303 -16.14307 -15.75564 -15.33391 -15.11061 -14.74467 -14.48305 -14.22480 -13.67374 -13.38445 -13.28295 -13.06267 -12.67981 -12.28341 -12.07746 -11.85287 -11.74248 -11.45751 -11.27367 -11.18282 -11.11428 -10.93727 -10.61800 -10.53747 -10.41939 -9.68046 -9.48807 -9.24760 -8.44186 -8.39546 -8.24909 -7.50225 -7.19381 -6.74870 -4.41969 1.57682 1.66444 2.76350 2.90703 3.05271 3.08026 3.18013 3.91832 4.06001 4.39238 4.60851 4.98194 5.02744 5.16498 5.22501 5.37305 5.40964 5.56712 5.59849 5.68871 5.78977 5.90218 6.03291 6.16997 6.22077 6.25754 6.32267 6.41825 6.52358 6.69956 6.79048 6.85954 6.98286 7.00439 7.01935 7.15271 7.29711 7.34463 7.39543 7.52848 7.79186 7.97492 7.99889 8.21583 8.57447 8.85336 8.89729 10.20343 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019884 B = 0.005113 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.825539 B = 5475.111984 C = 6316.064960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.108 3.892 10 C -0.150 4.150 11 C -0.110 4.110 12 C -0.216 4.216 13 C -0.042 4.042 14 C -0.013 4.013 15 C -0.115 4.115 16 C -0.125 4.125 17 C -0.130 4.130 18 C -0.125 4.125 19 C -0.068 4.068 20 C -0.115 4.115 21 C 0.054 3.946 22 N -0.681 5.681 23 C 0.099 3.901 24 C -0.196 4.196 25 H 0.280 0.720 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.342 0.658 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -9.950 4.150 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.497 4.497 8 H 0.094 0.906 9 C 0.106 3.894 10 C -0.170 4.170 11 C -0.128 4.128 12 C -0.236 4.236 13 C -0.042 4.042 14 C -0.013 4.013 15 C -0.133 4.133 16 C -0.143 4.143 17 C -0.149 4.149 18 C -0.127 4.127 19 C -0.068 4.068 20 C -0.153 4.153 21 C -0.076 4.076 22 N -0.309 5.309 23 C -0.031 4.031 24 C -0.215 4.215 25 H 0.091 0.909 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.279 -10.002 4.797 11.324 hybrid contribution 0.471 0.980 -1.156 1.587 sum 2.750 -9.022 3.641 10.110 Atomic orbital electron populations 1.69780 1.07418 1.29167 1.36475 1.25849 0.94780 1.01114 0.92342 0.86360 0.80053 0.80342 0.79909 1.18928 1.20356 1.19052 1.19489 0.96267 0.90595 1.43303 0.90646 1.17536 0.91484 0.91860 0.88511 1.21415 0.98588 0.96561 1.00389 1.20638 0.98797 0.93305 1.00082 1.20376 1.00154 0.96649 1.06377 1.18277 0.96527 0.90689 0.98752 1.19134 0.96314 0.93822 0.92011 1.21209 0.99790 0.92634 0.99673 1.20936 1.00876 0.97517 0.95006 1.20921 1.02453 0.98013 0.93503 1.20334 1.01312 0.93905 0.97147 1.19617 0.99210 0.94598 0.93403 1.21223 1.04050 0.95597 0.94448 1.22124 0.93735 0.97464 0.94227 1.61058 1.05879 1.04891 1.59023 1.20890 1.02296 0.92493 0.87411 1.21037 1.02669 0.92119 1.05721 0.90900 0.86384 0.89206 0.89428 0.86170 0.86590 0.86752 0.89317 0.89976 0.91034 0.90099 0.84062 0.90154 0.90128 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.48 10.93 55.55 0.61 -19.87 16 2 C 0.08 1.88 5.22 -17.35 -0.09 1.78 16 3 Si 0.91 18.54 29.58 -169.99 -5.03 13.51 16 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.47 -12.13 9.05 -37.73 -0.34 -12.47 16 8 H 0.08 1.89 7.88 -52.49 -0.41 1.48 16 9 C 0.11 2.81 5.54 -106.87 -0.59 2.22 16 10 C -0.15 -3.83 8.65 -38.82 -0.34 -4.16 16 11 C -0.11 -2.53 10.01 -39.71 -0.40 -2.93 16 12 C -0.22 -4.78 9.60 -38.97 -0.37 -5.16 16 13 C -0.04 -0.93 4.52 -104.97 -0.47 -1.40 16 14 C -0.01 -0.24 5.41 -104.81 -0.57 -0.81 16 15 C -0.12 -1.95 9.59 -39.32 -0.38 -2.33 16 16 C -0.13 -1.80 10.03 -39.71 -0.40 -2.20 16 17 C -0.13 -1.79 9.64 -39.41 -0.38 -2.17 16 18 C -0.13 -1.86 5.79 -104.65 -0.61 -2.46 16 19 C -0.07 -1.18 5.78 -104.29 -0.60 -1.78 16 20 C -0.11 -1.93 4.33 -27.93 -0.12 -2.05 16 21 C 0.05 0.75 6.62 -3.73 -0.02 0.72 16 22 N -0.68 -8.76 6.96 -115.15 -0.80 -9.56 16 23 C 0.10 1.22 6.33 -5.15 -0.03 1.18 16 24 C -0.20 -4.65 7.98 -38.53 -0.31 -4.96 16 25 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 26 H 0.12 3.11 6.27 -52.49 -0.33 2.78 16 27 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 29 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 32 H 0.09 1.70 7.35 -51.93 -0.38 1.32 16 33 H 0.08 1.45 6.86 -51.93 -0.36 1.09 16 34 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.34 4.25 8.74 -39.29 -0.34 3.91 16 37 H 0.08 0.85 8.13 -51.93 -0.42 0.43 16 38 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.09 2.14 6.92 -52.48 -0.36 1.77 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -26.82 317.96 -11.57 -38.39 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.12 Total: 11.72 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: -6.02 Total: -38.98 kcal Atomic # 7 Polarization: -29.24 SS G_CDS: -0.19 Total: -29.43 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.82 -11.57 -38.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236348609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.457 kcal (2) G-P(sol) polarization free energy of solvation -26.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds