Wall clock time and date at job start Wed Apr 15 2020 11:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 120.00203 * 2 1 4 4 H 1.48504 * 109.46793 * 239.99907 * 3 2 1 5 5 H 1.48496 * 109.47012 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47358 * 119.99646 * 3 2 1 7 7 C 1.39935 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99681 * 192.52420 * 7 2 1 9 9 C 1.41426 * 120.00021 * 12.52972 * 7 2 1 10 10 C 1.40784 * 120.18568 * 28.70926 * 9 7 2 11 11 C 1.37679 * 119.98589 * 180.02562 * 10 9 7 12 12 C 1.38440 * 120.37914 * 359.72796 * 11 10 9 13 13 C 1.39679 * 120.37896 * 0.55055 * 12 11 10 14 14 C 1.48415 * 120.00130 * 179.72301 * 13 12 11 15 15 C 1.39179 * 119.94818 * 55.39939 * 14 13 12 16 16 C 1.38003 * 119.69288 * 180.02562 * 15 14 13 17 17 C 1.38135 * 119.99781 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.63686 * 0.02562 * 17 16 15 19 19 C 1.37660 * 119.79893 * 359.86327 * 18 17 16 20 20 C 1.50700 * 121.72313 * 180.22670 * 19 18 17 21 21 C 1.52900 * 109.97224 * 343.27875 * 20 19 18 22 22 N 1.47162 * 108.49318 * 50.27576 * 21 20 19 23 23 C 1.46627 * 110.23558 * 288.76414 * 22 21 20 24 24 C 1.38767 * 119.99914 * 359.45027 * 13 12 11 25 25 H 0.97002 * 120.00225 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00895 * 0.04327 * 10 9 7 27 27 H 1.08001 * 119.81147 * 180.02562 * 11 10 9 28 28 H 1.08004 * 119.80447 * 180.27467 * 12 11 10 29 29 H 1.07996 * 120.15446 * 359.97438 * 15 14 13 30 30 H 1.08000 * 120.00295 * 180.02562 * 16 15 14 31 31 H 1.08005 * 119.67740 * 179.97438 * 17 16 15 32 32 H 1.09003 * 109.38783 * 223.13207 * 20 19 18 33 33 H 1.08993 * 109.30372 * 103.38413 * 20 19 18 34 34 H 1.09000 * 109.63745 * 290.57208 * 21 20 19 35 35 H 1.08999 * 109.79773 * 170.07247 * 21 20 19 36 36 H 1.00903 * 111.00059 * 52.16818 * 22 21 20 37 37 H 1.09000 * 109.30312 * 172.88762 * 23 22 21 38 38 H 1.09009 * 109.29836 * 292.26199 * 23 22 21 39 39 H 1.08007 * 120.18544 * 180.29626 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0686 -1.2229 0.2034 9 6 1.3260 -2.4222 -0.2646 10 6 0.1812 -2.4248 -1.0841 11 6 -0.4798 -3.6053 -1.3391 12 6 -0.0222 -4.7948 -0.7984 13 6 1.1086 -4.8093 0.0214 14 6 1.5882 -6.0884 0.6016 15 6 1.8754 -7.1651 -0.2322 16 6 2.3206 -8.3522 0.3130 17 6 2.4786 -8.4678 1.6804 18 6 2.1932 -7.3988 2.5183 19 6 1.7508 -6.2098 1.9838 20 6 1.4330 -5.0201 2.8525 21 6 1.2725 -5.4635 4.3070 22 7 2.4382 -6.2821 4.6768 23 6 2.3794 -7.5824 4.0019 24 6 1.7869 -3.6287 0.2888 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1783 -1.5011 -1.5128 27 1 -1.3575 -3.6042 -1.9684 28 1 -0.5453 -5.7162 -1.0081 29 1 1.7498 -7.0724 -1.3008 30 1 2.5453 -9.1908 -0.3294 31 1 2.8269 -9.3994 2.1015 32 1 0.5063 -4.5594 2.5104 33 1 2.2445 -4.2958 2.7825 34 1 0.3623 -6.0539 4.4116 35 1 1.2184 -4.5892 4.9557 36 1 3.2996 -5.8022 4.4627 37 1 3.3068 -8.1253 4.1842 38 1 1.5442 -8.1581 4.4010 39 1 2.6644 -3.6371 0.9184 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236348609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:51 Heat of formation + Delta-G solvation = 16.786420 kcal Electronic energy + Delta-G solvation = -20933.876052 eV Core-core repulsion = 17996.983065 eV Total energy + Delta-G solvation = -2936.892987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25099 -39.23080 -37.45713 -35.67623 -33.98540 -31.98774 -31.52850 -31.12409 -29.10568 -27.17977 -25.30211 -24.33551 -23.82180 -22.44738 -21.51960 -20.93166 -18.99808 -17.41235 -17.25363 -16.79995 -16.51034 -16.35278 -15.69724 -15.68842 -15.29622 -14.82560 -14.53926 -14.40338 -14.28849 -13.81115 -13.55099 -13.33469 -13.13779 -12.92469 -12.77531 -12.67500 -12.48116 -12.30129 -12.26225 -12.16261 -11.83652 -11.42281 -11.24256 -11.09280 -9.82142 -9.57206 -9.45173 -9.38195 -8.90993 -8.61747 -6.39845 0.24877 0.44538 0.95345 1.13756 1.36601 1.47824 1.50967 2.19846 2.69249 2.84714 3.33170 3.65744 3.78610 3.92329 3.92533 4.07568 4.19224 4.21375 4.41511 4.49602 4.58170 4.60989 4.63905 4.71515 4.87811 4.94770 4.96419 5.01724 5.02825 5.13285 5.22423 5.29566 5.38828 5.49410 5.54339 5.69782 5.76360 5.93856 5.95634 6.05044 6.08909 6.15089 6.34637 6.37173 6.64747 6.91845 6.97647 8.35425 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019884 B = 0.005113 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.825539 B = 5475.111984 C = 6316.064960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.072 0.928 9 C 0.081 3.919 10 C -0.179 4.179 11 C -0.110 4.110 12 C -0.220 4.220 13 C -0.032 4.032 14 C -0.051 4.051 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.124 4.124 19 C -0.085 4.085 20 C -0.108 4.108 21 C 0.063 3.937 22 N -0.677 5.677 23 C 0.099 3.901 24 C -0.207 4.207 25 H 0.287 0.713 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.345 0.655 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 -12.424 5.192 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.532 4.532 8 H 0.090 0.910 9 C 0.079 3.921 10 C -0.198 4.198 11 C -0.129 4.129 12 C -0.240 4.240 13 C -0.032 4.032 14 C -0.051 4.051 15 C -0.144 4.144 16 C -0.137 4.137 17 C -0.137 4.137 18 C -0.126 4.126 19 C -0.086 4.086 20 C -0.146 4.146 21 C -0.066 4.066 22 N -0.303 5.303 23 C -0.030 4.030 24 C -0.226 4.226 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.168 0.832 31 H 0.173 0.827 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.162 0.838 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.259 -12.495 5.840 14.172 hybrid contribution 0.162 1.536 -1.458 2.124 sum 3.421 -10.959 4.382 12.289 Atomic orbital electron populations 1.69849 1.08830 1.30404 1.36878 1.26688 0.95553 1.04270 0.91286 0.85265 0.78739 0.75806 0.79973 1.18573 1.19130 1.18462 1.19726 0.96360 0.91844 1.45305 0.91025 1.17883 0.92207 0.92878 0.89168 1.21345 0.99657 0.96875 1.01934 1.20906 0.99130 0.92892 0.99940 1.20689 1.00185 0.97084 1.06000 1.18576 0.95574 0.91712 0.97305 1.19118 0.99374 0.93251 0.93314 1.21323 1.00375 0.93170 0.99573 1.21318 0.99209 0.97209 0.95999 1.21415 1.00217 0.98938 0.93100 1.20686 0.99977 0.93007 0.98931 1.19708 1.00351 0.95779 0.92736 1.21088 1.01479 0.95371 0.96683 1.22034 0.94535 0.98032 0.92044 1.61083 1.05447 1.05098 1.58712 1.21075 1.04227 0.92293 0.85415 1.21066 1.02969 0.92532 1.06063 0.90263 0.88040 0.86924 0.87238 0.86243 0.83170 0.82681 0.92837 0.91891 0.90619 0.89514 0.83783 0.87370 0.88860 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.33 10.93 21.82 0.24 -44.09 16 2 C 0.04 1.84 5.22 85.25 0.44 2.28 16 3 Si 0.98 38.90 29.58 68.60 2.03 40.93 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.50 -27.63 9.05 23.47 0.21 -27.42 16 8 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 9 C 0.08 4.45 5.54 -21.32 -0.12 4.33 16 10 C -0.18 -9.61 8.65 22.76 0.20 -9.42 16 11 C -0.11 -5.26 10.01 22.19 0.22 -5.03 16 12 C -0.22 -9.93 9.60 22.67 0.22 -9.71 16 13 C -0.03 -1.43 4.52 -20.09 -0.09 -1.53 16 14 C -0.05 -1.93 5.41 -19.99 -0.11 -2.04 16 15 C -0.13 -4.11 9.59 22.44 0.22 -3.89 16 16 C -0.12 -2.99 10.03 22.19 0.22 -2.76 16 17 C -0.12 -2.71 9.64 22.38 0.22 -2.49 16 18 C -0.12 -3.32 5.79 -19.89 -0.12 -3.43 16 19 C -0.09 -2.92 5.78 -19.65 -0.11 -3.04 16 20 C -0.11 -3.74 4.33 29.81 0.13 -3.61 16 21 C 0.06 1.71 6.62 86.22 0.57 2.29 16 22 N -0.68 -15.83 6.96 -518.23 -3.61 -19.44 16 23 C 0.10 2.06 6.33 85.59 0.54 2.60 16 24 C -0.21 -10.42 7.98 22.95 0.18 -10.24 16 25 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 26 H 0.10 5.70 6.27 -2.91 -0.02 5.68 16 27 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 28 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.05 2.19 7.35 -2.39 -0.02 2.18 16 33 H 0.06 2.37 6.86 -2.39 -0.02 2.35 16 34 H 0.08 1.99 8.05 -2.39 -0.02 1.98 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.34 7.93 8.74 -89.69 -0.78 7.15 16 37 H 0.11 1.71 8.13 -2.39 -0.02 1.69 16 38 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.09 4.39 6.92 -2.91 -0.02 4.37 16 Total: -1.00 -61.42 317.96 1.76 -59.65 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: 0.28 Total: 36.06 kcal Atomic # 6 Polarization: -75.94 SS G_CDS: 2.83 Total: -73.11 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -3.37 Total: -63.54 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -61.42 1.76 -59.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236348609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.440 kcal (2) G-P(sol) polarization free energy of solvation -61.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds