Wall clock time and date at job start Wed Apr 15 2020 11:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99582 * 2 1 4 4 H 1.48496 * 109.46876 * 239.99978 * 3 2 1 5 5 H 1.48496 * 109.47182 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47085 * 120.00082 * 3 2 1 7 7 C 1.37871 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00513 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46883 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.94600 * 270.21319 * 10 9 7 12 12 C 1.38290 * 120.24813 * 180.25588 * 11 10 9 13 13 C 1.38046 * 120.12102 * 359.79264 * 12 11 10 14 14 C 1.39316 * 119.87389 * 359.97234 * 13 12 11 15 15 C 1.48394 * 120.11925 * 179.97438 * 14 13 12 16 16 C 1.39338 * 120.53622 * 179.74221 * 15 14 13 17 17 N 1.31726 * 120.59158 * 179.77577 * 16 15 14 18 18 C 1.31912 * 121.85051 * 0.49695 * 17 16 15 19 19 C 1.38264 * 121.03662 * 359.77150 * 18 17 16 20 20 C 1.50695 * 120.36412 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49662 * 8.64388 * 20 19 18 22 22 C 1.53000 * 117.49919 * 300.02266 * 20 19 18 23 23 C 1.38466 * 119.28113 * 359.97398 * 19 18 17 24 24 C 1.37999 * 119.93478 * 90.00196 * 10 9 7 25 25 H 0.97000 * 120.00731 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46688 * 60.00365 * 9 7 2 27 27 H 1.08993 * 109.47297 * 300.00145 * 9 7 2 28 28 H 1.08001 * 119.87348 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.94199 * 179.76542 * 12 11 10 30 30 H 1.08000 * 120.06001 * 179.97438 * 13 12 11 31 31 H 1.07998 * 119.70476 * 0.02925 * 16 15 14 32 32 H 1.08004 * 119.48436 * 179.74632 * 18 17 16 33 33 H 1.08998 * 115.55205 * 154.34702 * 20 19 18 34 34 H 1.08997 * 117.49766 * 359.97438 * 21 20 19 35 35 H 1.09003 * 117.49962 * 145.02149 * 21 20 19 36 36 H 1.08998 * 117.50148 * 214.97764 * 22 20 19 37 37 H 1.09004 * 117.49533 * 359.97438 * 22 20 19 38 38 H 1.07994 * 120.84226 * 179.97438 * 23 19 18 39 39 H 1.08002 * 120.06557 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0018 11 6 2.6817 -4.1659 -1.2011 12 6 3.5764 -5.2203 -1.2096 13 6 4.0275 -5.7557 -0.0198 14 6 3.5801 -5.2313 1.1909 15 6 4.0610 -5.8031 2.4731 16 6 3.6234 -5.2819 3.6890 17 7 4.0462 -5.7914 4.8278 18 6 4.8984 -6.7975 4.8664 19 6 5.3833 -7.3661 3.7031 20 6 6.3569 -8.5146 3.7650 21 6 6.6203 -9.1445 5.1343 22 6 7.6907 -8.2727 4.4746 23 6 4.9645 -6.8688 2.4806 24 6 2.6789 -4.1684 1.1935 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.3305 -3.7508 -2.1342 29 1 3.9225 -5.6261 -2.1487 30 1 4.7259 -6.5795 -0.0276 31 1 2.9282 -4.4554 3.6978 32 1 5.2229 -7.1828 5.8218 33 1 6.3607 -9.1750 2.8978 34 1 6.0897 -8.7278 5.9904 35 1 6.7973 -10.2195 5.1682 36 1 8.5719 -8.7741 4.0744 37 1 7.8640 -7.2826 4.8962 38 1 5.3274 -7.2937 1.5564 39 1 2.3283 -3.7587 2.1293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242197153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:03 Heat of formation + Delta-G solvation = 68.899984 kcal Electronic energy + Delta-G solvation = -19836.847826 eV Core-core repulsion = 16902.214653 eV Total energy + Delta-G solvation = -2934.633173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.52351 -38.65757 -37.26402 -33.91328 -32.83015 -31.65624 -31.14750 -28.85582 -27.13320 -24.68247 -24.10540 -22.99740 -22.54862 -22.14615 -20.58644 -19.46914 -17.54586 -16.57782 -16.35492 -15.84324 -15.67797 -15.06604 -14.58138 -14.31411 -14.13990 -13.94933 -13.36182 -13.18994 -12.65952 -12.54453 -12.34708 -12.00656 -11.87899 -11.72084 -11.34665 -11.25838 -11.12450 -10.85172 -10.72372 -10.51857 -10.41379 -9.99465 -9.57446 -9.47792 -9.37567 -9.00832 -8.45178 -8.07051 -7.71563 -6.07342 -4.11680 0.75472 1.19900 2.00116 2.22176 3.30757 3.35001 3.38137 3.46470 3.91492 4.16795 4.36898 4.50084 4.53219 4.54624 4.66982 4.79922 4.84860 4.95772 5.00439 5.22477 5.27866 5.31453 5.41842 5.49079 5.59434 5.69211 5.75644 5.79616 5.91173 5.97391 6.02806 6.16114 6.30281 6.47696 6.63698 6.70230 6.95585 7.07187 7.09293 7.44172 7.60408 7.76685 7.88087 8.00394 8.27092 8.93267 9.52598 11.02517 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.003515 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.980302 B = 7963.726297 C = 8513.322432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.047 3.953 10 C -0.031 4.031 11 C -0.114 4.114 12 C -0.122 4.122 13 C -0.134 4.134 14 C -0.060 4.060 15 C -0.069 4.069 16 C 0.100 3.900 17 N -0.476 5.476 18 C 0.083 3.917 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.176 4.176 22 C -0.169 4.169 23 C -0.071 4.071 24 C -0.106 4.106 25 H 0.263 0.737 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.163 0.837 32 H 0.151 0.849 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.135 0.865 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.788 -17.349 5.627 21.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.010 3.990 10 C -0.031 4.031 11 C -0.132 4.132 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.061 4.061 15 C -0.071 4.071 16 C -0.058 4.058 17 N -0.183 5.183 18 C -0.074 4.074 19 C -0.106 4.106 20 C -0.131 4.131 21 C -0.213 4.213 22 C -0.206 4.206 23 C -0.096 4.096 24 C -0.124 4.124 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.138 0.862 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.180 0.820 32 H 0.168 0.832 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.153 0.847 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.318 -16.868 6.429 21.306 hybrid contribution 0.794 0.609 -0.899 1.345 sum 12.112 -16.259 5.530 21.015 Atomic orbital electron populations 1.69937 1.06035 1.27026 1.50212 1.25000 0.94879 0.99257 0.95070 0.86598 0.79556 0.82785 0.78777 1.20154 1.21193 1.20109 1.21005 0.93012 0.89824 1.51417 0.92496 1.18377 0.92524 0.89513 0.98557 1.20654 0.95920 0.94942 0.91627 1.21224 0.97496 0.95972 0.98511 1.20970 0.98453 0.97387 0.97225 1.20890 1.01516 1.00878 0.91900 1.18521 0.99162 0.97479 0.90904 1.19885 0.96932 0.95873 0.94418 1.23059 0.97643 0.98403 0.86662 1.67682 1.10641 1.10078 1.29876 1.22602 0.94176 0.92902 0.97715 1.20006 0.98808 0.97614 0.94153 1.20910 0.96714 0.98198 0.97300 1.23072 1.03053 0.99472 0.95689 1.23049 0.92267 1.01708 1.03580 1.21434 0.95449 0.95015 0.97713 1.21150 0.97163 0.95304 0.98783 0.92713 0.95164 0.95180 0.86167 0.86698 0.86948 0.82038 0.83230 0.86782 0.88240 0.88264 0.88321 0.88480 0.84714 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.20 9.09 -34.44 -0.31 -14.52 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 10 C -0.03 -0.66 5.06 -104.67 -0.53 -1.19 16 11 C -0.11 -2.14 9.69 -39.52 -0.38 -2.52 16 12 C -0.12 -1.93 10.03 -39.63 -0.40 -2.33 16 13 C -0.13 -2.04 9.44 -39.25 -0.37 -2.41 16 14 C -0.06 -1.00 5.88 -104.90 -0.62 -1.62 16 15 C -0.07 -1.04 5.89 -104.75 -0.62 -1.66 16 16 C 0.10 1.54 10.60 -17.19 -0.18 1.36 16 17 N -0.48 -7.16 10.35 -12.97 -0.13 -7.30 16 18 C 0.08 1.03 10.46 -17.51 -0.18 0.85 16 19 C -0.10 -1.20 5.62 -104.53 -0.59 -1.79 16 20 C -0.11 -0.97 6.06 -91.77 -0.56 -1.52 16 21 C -0.18 -1.23 9.87 -26.73 -0.26 -1.49 16 22 C -0.17 -1.25 10.17 -26.73 -0.27 -1.52 16 23 C -0.07 -0.90 9.25 -38.94 -0.36 -1.26 16 24 C -0.11 -2.03 9.09 -39.25 -0.36 -2.39 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 28 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.11 1.38 6.28 -52.49 -0.33 1.05 16 31 H 0.16 2.42 6.23 -52.49 -0.33 2.09 16 32 H 0.15 1.49 6.03 -52.48 -0.32 1.17 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.67 6.20 -51.93 -0.32 0.35 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.14 1.44 6.33 -52.49 -0.33 1.11 16 39 H 0.12 2.26 6.24 -52.49 -0.33 1.93 16 LS Contribution 329.45 15.07 4.96 4.96 Total: -1.00 -30.28 329.45 -10.56 -40.84 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.87 Total: 1.88 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -6.23 Total: -31.40 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.60 Total: -32.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.28 -10.56 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242197153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.737 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds