Wall clock time and date at job start Wed Apr 15 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99582 * 2 1 4 4 H 1.48496 * 109.46876 * 239.99978 * 3 2 1 5 5 H 1.48496 * 109.47182 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47085 * 120.00082 * 3 2 1 7 7 C 1.37871 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00513 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99619 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.46883 * 179.97438 * 9 7 2 11 11 C 1.38340 * 119.94600 * 270.21319 * 10 9 7 12 12 C 1.38290 * 120.24813 * 180.25588 * 11 10 9 13 13 C 1.38046 * 120.12102 * 359.79264 * 12 11 10 14 14 C 1.39316 * 119.87389 * 359.97234 * 13 12 11 15 15 C 1.48394 * 120.11925 * 179.97438 * 14 13 12 16 16 C 1.39338 * 120.53622 * 179.74221 * 15 14 13 17 17 N 1.31726 * 120.59158 * 179.77577 * 16 15 14 18 18 C 1.31912 * 121.85051 * 0.49695 * 17 16 15 19 19 C 1.38264 * 121.03662 * 359.77150 * 18 17 16 20 20 C 1.50695 * 120.36412 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49662 * 8.64388 * 20 19 18 22 22 C 1.53000 * 117.49919 * 300.02266 * 20 19 18 23 23 C 1.38466 * 119.28113 * 359.97398 * 19 18 17 24 24 C 1.37999 * 119.93478 * 90.00196 * 10 9 7 25 25 H 0.97000 * 120.00731 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46688 * 60.00365 * 9 7 2 27 27 H 1.08993 * 109.47297 * 300.00145 * 9 7 2 28 28 H 1.08001 * 119.87348 * 359.97438 * 11 10 9 29 29 H 1.08003 * 119.94199 * 179.76542 * 12 11 10 30 30 H 1.08000 * 120.06001 * 179.97438 * 13 12 11 31 31 H 1.07998 * 119.70476 * 0.02925 * 16 15 14 32 32 H 1.08004 * 119.48436 * 179.74632 * 18 17 16 33 33 H 1.08998 * 115.55205 * 154.34702 * 20 19 18 34 34 H 1.08997 * 117.49766 * 359.97438 * 21 20 19 35 35 H 1.09003 * 117.49962 * 145.02149 * 21 20 19 36 36 H 1.08998 * 117.50148 * 214.97764 * 22 20 19 37 37 H 1.09004 * 117.49533 * 359.97438 * 22 20 19 38 38 H 1.07994 * 120.84226 * 179.97438 * 23 19 18 39 39 H 1.08002 * 120.06557 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0018 11 6 2.6817 -4.1659 -1.2011 12 6 3.5764 -5.2203 -1.2096 13 6 4.0275 -5.7557 -0.0198 14 6 3.5801 -5.2313 1.1909 15 6 4.0610 -5.8031 2.4731 16 6 3.6234 -5.2819 3.6890 17 7 4.0462 -5.7914 4.8278 18 6 4.8984 -6.7975 4.8664 19 6 5.3833 -7.3661 3.7031 20 6 6.3569 -8.5146 3.7650 21 6 6.6203 -9.1445 5.1343 22 6 7.6907 -8.2727 4.4746 23 6 4.9645 -6.8688 2.4806 24 6 2.6789 -4.1684 1.1935 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5566 -0.8903 27 1 0.6248 -2.5571 0.8896 28 1 2.3305 -3.7508 -2.1342 29 1 3.9225 -5.6261 -2.1487 30 1 4.7259 -6.5795 -0.0276 31 1 2.9282 -4.4554 3.6978 32 1 5.2229 -7.1828 5.8218 33 1 6.3607 -9.1750 2.8978 34 1 6.0897 -8.7278 5.9904 35 1 6.7973 -10.2195 5.1682 36 1 8.5719 -8.7741 4.0744 37 1 7.8640 -7.2826 4.8962 38 1 5.3274 -7.2937 1.5564 39 1 2.3283 -3.7587 2.1293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242197153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:02 Heat of formation + Delta-G solvation = 54.601917 kcal Electronic energy + Delta-G solvation = -19837.467836 eV Core-core repulsion = 16902.214653 eV Total energy + Delta-G solvation = -2935.253184 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56662 -39.96133 -38.00442 -35.66986 -34.34085 -32.84408 -32.60952 -30.10280 -28.93933 -25.76211 -25.50968 -24.49649 -23.27074 -23.13837 -21.82216 -20.67045 -18.63210 -18.48049 -17.56537 -17.12848 -16.72627 -16.42304 -15.92465 -15.64132 -15.25351 -14.97454 -14.59121 -14.53593 -14.38053 -13.90793 -13.43316 -13.41667 -13.19848 -12.87687 -12.83290 -12.60481 -12.32522 -12.27733 -12.00672 -11.95537 -11.66571 -11.40258 -11.23304 -11.03078 -10.62623 -10.43944 -9.94071 -9.54497 -9.02854 -8.22461 -6.35960 -0.39638 0.19114 0.61186 0.94206 1.38083 1.40663 1.48966 2.37596 2.60247 3.02682 3.08348 3.18611 3.29291 3.62055 3.65772 3.87096 3.93892 4.00185 4.04292 4.12958 4.17025 4.22837 4.35675 4.50128 4.59912 4.72314 4.75375 4.84008 4.98207 5.05457 5.08338 5.13785 5.19876 5.28360 5.32253 5.33367 5.36041 5.58015 5.64641 5.69361 5.75519 6.04004 6.08626 6.21937 6.76399 6.94333 7.32749 8.86833 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.003515 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.980302 B = 7963.726297 C = 8513.322432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.056 3.944 10 C -0.062 4.062 11 C -0.131 4.131 12 C -0.109 4.109 13 C -0.122 4.122 14 C -0.055 4.055 15 C -0.086 4.086 16 C 0.078 3.922 17 N -0.500 5.500 18 C 0.079 3.921 19 C -0.095 4.095 20 C -0.125 4.125 21 C -0.169 4.169 22 C -0.165 4.165 23 C -0.066 4.066 24 C -0.125 4.125 25 H 0.266 0.734 26 H 0.006 0.994 27 H 0.001 0.999 28 H 0.117 0.883 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.174 0.826 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.163 0.837 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.161 -19.818 5.441 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.062 4.062 11 C -0.149 4.149 12 C -0.127 4.127 13 C -0.140 4.140 14 C -0.055 4.055 15 C -0.088 4.088 16 C -0.079 4.079 17 N -0.207 5.207 18 C -0.078 4.078 19 C -0.097 4.097 20 C -0.144 4.144 21 C -0.205 4.205 22 C -0.202 4.202 23 C -0.091 4.091 24 C -0.143 4.143 25 H 0.075 0.925 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.135 0.865 29 H 0.174 0.826 30 H 0.174 0.826 31 H 0.165 0.835 32 H 0.191 0.809 33 H 0.149 0.851 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.181 0.819 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.691 -19.341 6.241 25.077 hybrid contribution -0.185 1.214 -0.732 1.429 sum 14.507 -18.127 5.509 23.862 Atomic orbital electron populations 1.70064 1.07654 1.28071 1.51134 1.25917 0.95764 1.03086 0.94524 0.85514 0.78340 0.78153 0.79162 1.19055 1.20450 1.19502 1.21335 0.93032 0.91250 1.51194 0.92814 1.18103 0.92909 0.91193 0.95869 1.20316 0.97036 0.95178 0.93709 1.21286 0.98845 0.97465 0.97266 1.21344 0.96489 0.95540 0.99315 1.21375 1.00902 1.01029 0.90668 1.18686 0.97914 0.96258 0.92688 1.19821 0.98469 0.97313 0.93195 1.22962 0.98455 0.98924 0.87526 1.67657 1.11870 1.11394 1.29818 1.23106 0.93200 0.92012 0.99474 1.20319 0.98329 0.97786 0.93234 1.20996 0.96687 0.97672 0.99033 1.23192 1.02241 1.00504 0.94590 1.23115 0.92395 1.01642 1.03036 1.21735 0.94206 0.93768 0.99400 1.21093 0.98714 0.96899 0.97621 0.92505 0.97578 0.98078 0.86485 0.82632 0.82644 0.83463 0.80878 0.85080 0.88261 0.86487 0.86618 0.89360 0.81924 0.87212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.44 0.28 -56.38 16 2 C 0.01 0.31 5.46 84.65 0.46 0.78 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -30.75 9.09 25.60 0.23 -30.51 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.06 3.06 5.10 29.10 0.15 3.21 16 10 C -0.06 -2.78 5.06 -19.90 -0.10 -2.88 16 11 C -0.13 -4.94 9.69 22.31 0.22 -4.73 16 12 C -0.11 -3.15 10.03 22.24 0.22 -2.93 16 13 C -0.12 -3.33 9.44 22.48 0.21 -3.12 16 14 C -0.05 -1.79 5.88 -20.04 -0.12 -1.91 16 15 C -0.09 -2.52 5.89 -19.95 -0.12 -2.64 16 16 C 0.08 2.48 10.60 84.97 0.90 3.39 16 17 N -0.50 -15.08 10.35 -194.96 -2.02 -17.10 16 18 C 0.08 1.84 10.46 84.69 0.89 2.72 16 19 C -0.09 -1.91 5.62 -19.81 -0.11 -2.02 16 20 C -0.13 -1.64 6.06 -11.54 -0.07 -1.71 16 21 C -0.17 -1.70 9.87 30.60 0.30 -1.39 16 22 C -0.17 -1.81 10.17 30.59 0.31 -1.50 16 23 C -0.07 -1.47 9.25 22.68 0.21 -1.26 16 24 C -0.13 -5.06 9.09 22.48 0.20 -4.85 16 25 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.01 0.34 8.09 -2.39 -0.02 0.32 16 27 H 0.00 0.05 8.08 -2.39 -0.02 0.03 16 28 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 29 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.16 2.90 6.28 -2.91 -0.02 2.88 16 31 H 0.15 4.90 6.23 -2.91 -0.02 4.89 16 32 H 0.17 3.04 6.03 -2.91 -0.02 3.03 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.10 1.00 6.20 -2.39 -0.01 0.99 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.16 2.63 6.33 -2.91 -0.02 2.62 16 39 H 0.11 4.53 6.24 -2.91 -0.02 4.51 16 Total: -1.00 -69.24 329.45 5.14 -64.09 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.06 Total: 13.88 kcal Atomic # 6 Polarization: -55.17 SS G_CDS: 3.79 Total: -51.38 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.73 Total: -73.48 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.24 5.14 -64.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242197153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.696 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds