Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00287 * 2 1 4 4 H 1.48500 * 109.47374 * 240.00230 * 3 2 1 5 5 H 1.48499 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47452 * 120.00110 * 3 2 1 7 7 C 1.37881 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00302 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.38337 * 119.93564 * 270.01695 * 10 9 7 12 12 C 1.38308 * 120.24173 * 179.97438 * 11 10 9 13 13 C 1.38031 * 120.11907 * 0.02562 * 12 11 10 14 14 C 1.39318 * 119.87916 * 0.02562 * 13 12 11 15 15 C 1.48394 * 120.11756 * 180.27381 * 14 13 12 16 16 C 1.39359 * 120.12459 * 179.44369 * 15 14 13 17 17 C 1.37991 * 119.87928 * 179.72391 * 16 15 14 18 18 C 1.38310 * 120.18591 * 0.54562 * 17 16 15 19 19 C 1.38551 * 120.16185 * 359.74124 * 18 17 16 20 20 C 1.37974 * 120.09297 * 359.97438 * 19 18 17 21 21 C 1.51207 * 108.24166 * 179.97438 * 19 18 17 22 22 N 1.48048 * 105.67119 * 342.46967 * 21 19 18 23 23 C 1.48044 * 103.89986 * 27.66215 * 22 21 19 24 24 C 1.37992 * 119.93893 * 89.99665 * 10 9 7 25 25 H 0.96998 * 119.99259 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47142 * 59.99329 * 9 7 2 27 27 H 1.09005 * 109.46628 * 299.99537 * 9 7 2 28 28 H 1.08002 * 119.88024 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.93600 * 179.97438 * 12 11 10 30 30 H 1.08005 * 120.06198 * 180.02562 * 13 12 11 31 31 H 1.07999 * 120.06192 * 359.97438 * 16 15 14 32 32 H 1.07998 * 119.90691 * 180.28109 * 17 16 15 33 33 H 1.07995 * 120.03893 * 179.97438 * 20 19 18 34 34 H 1.09001 * 110.21317 * 101.51916 * 21 19 18 35 35 H 1.08999 * 110.20852 * 223.42386 * 21 19 18 36 36 H 1.00898 * 111.00119 * 147.02954 * 22 21 19 37 37 H 1.08998 * 110.20449 * 213.27735 * 23 22 21 38 38 H 1.09001 * 110.27137 * 91.42109 * 23 22 21 39 39 H 1.08000 * 120.06703 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0018 11 6 2.6801 -4.1697 -1.1964 12 6 3.5792 -5.2206 -1.2026 13 6 4.0323 -5.7516 -0.0118 14 6 3.5817 -5.2274 1.1978 15 6 4.0700 -5.7902 2.4811 16 6 3.6283 -5.2584 3.6912 17 6 4.0812 -5.7894 4.8816 18 6 4.9805 -6.8401 4.8769 19 6 5.4273 -7.3687 3.6766 20 6 4.9760 -6.8486 2.4810 21 6 6.3913 -8.4923 3.9838 22 7 6.7965 -8.2972 5.3944 23 6 5.6395 -7.6032 6.0039 24 6 2.6769 -4.1676 1.1982 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.3285 -3.7569 -2.1305 29 1 3.9268 -5.6270 -2.1410 30 1 4.7347 -6.5720 -0.0178 31 1 2.9297 -4.4348 3.6972 32 1 3.7357 -5.3805 5.8196 33 1 5.3251 -7.2609 1.5459 34 1 5.8967 -9.4562 3.8641 35 1 7.2615 -8.4311 3.3303 36 1 6.9668 -9.1825 5.8475 37 1 5.9786 -6.9142 6.7774 38 1 4.9433 -8.3284 6.4253 39 1 2.3257 -3.7564 2.1331 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242676413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = 48.403030 kcal Electronic energy + Delta-G solvation = -19955.195771 eV Core-core repulsion = 17019.673783 eV Total energy + Delta-G solvation = -2935.521988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.38027 -38.72366 -36.36045 -33.55608 -32.11992 -31.27313 -31.00185 -28.77087 -27.66107 -26.79304 -24.04508 -23.09845 -22.50846 -21.49063 -20.40291 -19.54460 -17.08301 -16.42656 -16.22332 -15.64288 -15.47477 -15.01628 -14.53762 -14.40220 -13.80582 -13.78148 -13.47409 -13.07487 -12.94101 -12.72881 -12.43475 -12.32602 -12.21497 -11.66938 -11.46899 -11.30361 -11.15479 -10.89190 -10.67750 -10.47661 -10.26869 -9.68834 -9.50355 -9.40390 -9.00177 -8.59744 -8.44256 -7.98602 -7.54758 -6.06567 -4.10616 0.91203 1.38274 2.06010 2.26026 3.31202 3.35210 3.38741 3.75061 3.96268 4.27338 4.37856 4.38921 4.58499 4.85175 4.98643 5.11051 5.14348 5.23693 5.28246 5.37185 5.42064 5.48224 5.53139 5.62829 5.85684 5.88599 6.01698 6.09309 6.13101 6.19335 6.32029 6.54602 6.56986 6.60717 6.70673 6.90462 6.93866 7.06453 7.12872 7.17894 7.46522 7.65839 7.79984 7.89223 8.28846 8.94469 9.53470 11.03306 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.003637 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.713876 B = 7697.004131 C = 8410.962854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.048 3.952 10 C -0.033 4.033 11 C -0.117 4.117 12 C -0.123 4.123 13 C -0.135 4.135 14 C -0.061 4.061 15 C -0.021 4.021 16 C -0.109 4.109 17 C -0.095 4.095 18 C -0.117 4.117 19 C -0.106 4.106 20 C -0.096 4.096 21 C 0.082 3.918 22 N -0.660 5.660 23 C 0.082 3.918 24 C -0.108 4.108 25 H 0.263 0.737 26 H 0.030 0.970 27 H 0.029 0.971 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.344 0.656 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.497 -16.957 7.914 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.011 3.989 10 C -0.033 4.033 11 C -0.135 4.135 12 C -0.141 4.141 13 C -0.153 4.153 14 C -0.061 4.061 15 C -0.021 4.021 16 C -0.127 4.127 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.107 4.107 20 C -0.114 4.114 21 C -0.047 4.047 22 N -0.288 5.288 23 C -0.047 4.047 24 C -0.125 4.125 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.152 0.848 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.811 -16.261 7.838 20.545 hybrid contribution -0.239 0.301 0.006 0.384 sum 9.572 -15.960 7.844 20.196 Atomic orbital electron populations 1.69948 1.06034 1.26973 1.50333 1.25006 0.94884 0.99255 0.95108 0.86595 0.79545 0.82764 0.78795 1.20140 1.21208 1.20119 1.21021 0.93035 0.89850 1.51261 0.92492 1.18365 0.92533 0.89564 0.98453 1.20639 0.96029 0.94946 0.91698 1.21203 0.97707 0.96134 0.98450 1.20969 0.98433 0.97468 0.97225 1.20917 1.01522 1.00981 0.91920 1.18648 0.98768 0.97347 0.91296 1.18797 0.95754 0.94791 0.92769 1.21303 1.00100 1.00029 0.91223 1.20388 0.97116 0.95548 0.98283 1.20514 0.98576 0.97581 0.95108 1.20368 0.98708 0.97947 0.93678 1.20484 0.97685 0.96473 0.96794 1.21373 0.97073 0.95213 0.91046 1.63484 1.37277 1.25586 1.02503 1.21367 0.90815 0.96913 0.95575 1.21149 0.97345 0.95423 0.98627 0.92751 0.95215 0.95295 0.86282 0.86788 0.86886 0.84796 0.85901 0.85769 0.92555 0.89261 0.84086 0.89319 0.92631 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.32 9.09 -34.44 -0.31 -14.63 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.05 1.21 5.10 -29.03 -0.15 1.07 16 10 C -0.03 -0.71 5.06 -104.68 -0.53 -1.24 16 11 C -0.12 -2.25 9.69 -39.52 -0.38 -2.64 16 12 C -0.12 -2.01 10.03 -39.63 -0.40 -2.41 16 13 C -0.14 -2.16 9.43 -39.26 -0.37 -2.53 16 14 C -0.06 -1.05 5.88 -104.90 -0.62 -1.66 16 15 C -0.02 -0.33 5.88 -104.90 -0.62 -0.94 16 16 C -0.11 -1.58 9.43 -39.25 -0.37 -1.95 16 17 C -0.09 -1.21 10.03 -39.65 -0.40 -1.60 16 18 C -0.12 -1.44 6.26 -104.22 -0.65 -2.10 16 19 C -0.11 -1.33 6.25 -104.35 -0.65 -1.98 16 20 C -0.10 -1.30 9.42 -39.28 -0.37 -1.67 16 21 C 0.08 0.79 7.45 -4.09 -0.03 0.76 16 22 N -0.66 -6.10 7.72 -114.01 -0.88 -6.98 16 23 C 0.08 0.78 7.45 -4.09 -0.03 0.75 16 24 C -0.11 -2.11 9.08 -39.26 -0.36 -2.47 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 28 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.48 6.21 -52.48 -0.33 1.15 16 31 H 0.13 1.91 6.21 -52.49 -0.33 1.58 16 32 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.12 1.46 6.21 -52.49 -0.33 1.14 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.34 2.23 8.92 -39.29 -0.35 1.88 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.12 2.30 6.21 -52.49 -0.33 1.97 16 LS Contribution 325.57 15.07 4.91 4.91 Total: -1.00 -30.72 325.57 -11.58 -42.30 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.99 Total: 2.48 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: -6.33 Total: -33.70 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: -0.14 Total: -32.49 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.72 -11.58 -42.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242676413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.704 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds