Wall clock time and date at job start Wed Apr 15 2020 11:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00287 * 2 1 4 4 H 1.48500 * 109.47374 * 240.00230 * 3 2 1 5 5 H 1.48499 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47452 * 120.00110 * 3 2 1 7 7 C 1.37881 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00302 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47183 * 180.02562 * 9 7 2 11 11 C 1.38337 * 119.93564 * 270.01695 * 10 9 7 12 12 C 1.38308 * 120.24173 * 179.97438 * 11 10 9 13 13 C 1.38031 * 120.11907 * 0.02562 * 12 11 10 14 14 C 1.39318 * 119.87916 * 0.02562 * 13 12 11 15 15 C 1.48394 * 120.11756 * 180.27381 * 14 13 12 16 16 C 1.39359 * 120.12459 * 179.44369 * 15 14 13 17 17 C 1.37991 * 119.87928 * 179.72391 * 16 15 14 18 18 C 1.38310 * 120.18591 * 0.54562 * 17 16 15 19 19 C 1.38551 * 120.16185 * 359.74124 * 18 17 16 20 20 C 1.37974 * 120.09297 * 359.97438 * 19 18 17 21 21 C 1.51207 * 108.24166 * 179.97438 * 19 18 17 22 22 N 1.48048 * 105.67119 * 342.46967 * 21 19 18 23 23 C 1.48044 * 103.89986 * 27.66215 * 22 21 19 24 24 C 1.37992 * 119.93893 * 89.99665 * 10 9 7 25 25 H 0.96998 * 119.99259 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47142 * 59.99329 * 9 7 2 27 27 H 1.09005 * 109.46628 * 299.99537 * 9 7 2 28 28 H 1.08002 * 119.88024 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.93600 * 179.97438 * 12 11 10 30 30 H 1.08005 * 120.06198 * 180.02562 * 13 12 11 31 31 H 1.07999 * 120.06192 * 359.97438 * 16 15 14 32 32 H 1.07998 * 119.90691 * 180.28109 * 17 16 15 33 33 H 1.07995 * 120.03893 * 179.97438 * 20 19 18 34 34 H 1.09001 * 110.21317 * 101.51916 * 21 19 18 35 35 H 1.08999 * 110.20852 * 223.42386 * 21 19 18 36 36 H 1.00898 * 111.00119 * 147.02954 * 22 21 19 37 37 H 1.08998 * 110.20449 * 213.27735 * 23 22 21 38 38 H 1.09001 * 110.27137 * 91.42109 * 23 22 21 39 39 H 1.08000 * 120.06703 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0018 11 6 2.6801 -4.1697 -1.1964 12 6 3.5792 -5.2206 -1.2026 13 6 4.0323 -5.7516 -0.0118 14 6 3.5817 -5.2274 1.1978 15 6 4.0700 -5.7902 2.4811 16 6 3.6283 -5.2584 3.6912 17 6 4.0812 -5.7894 4.8816 18 6 4.9805 -6.8401 4.8769 19 6 5.4273 -7.3687 3.6766 20 6 4.9760 -6.8486 2.4810 21 6 6.3913 -8.4923 3.9838 22 7 6.7965 -8.2972 5.3944 23 6 5.6395 -7.6032 6.0039 24 6 2.6769 -4.1676 1.1982 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.3285 -3.7569 -2.1305 29 1 3.9268 -5.6270 -2.1410 30 1 4.7347 -6.5720 -0.0178 31 1 2.9297 -4.4348 3.6972 32 1 3.7357 -5.3805 5.8196 33 1 5.3251 -7.2609 1.5459 34 1 5.8967 -9.4562 3.8641 35 1 7.2615 -8.4311 3.3303 36 1 6.9668 -9.1825 5.8475 37 1 5.9786 -6.9142 6.7774 38 1 4.9433 -8.3284 6.4253 39 1 2.3257 -3.7564 2.1331 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242676413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:36 Heat of formation + Delta-G solvation = 31.357018 kcal Electronic energy + Delta-G solvation = -19955.934941 eV Core-core repulsion = 17019.673783 eV Total energy + Delta-G solvation = -2936.261158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36091 -40.04000 -37.35951 -35.48009 -33.54625 -32.63064 -32.18900 -29.86264 -29.12373 -28.09196 -25.49602 -24.58651 -23.76659 -22.44191 -21.63731 -20.86316 -18.54968 -18.07356 -17.41285 -16.76896 -16.53381 -16.31071 -16.16558 -15.68441 -15.01304 -14.73179 -14.60502 -14.45601 -14.19274 -13.97635 -13.87203 -13.53573 -13.30926 -13.11252 -13.02536 -12.79293 -12.60633 -12.45279 -12.29942 -11.98368 -11.65335 -11.61206 -11.27849 -10.63042 -10.56922 -9.97460 -9.56331 -9.43358 -8.77028 -8.22851 -6.36466 -0.26065 0.37802 0.62235 0.98194 1.37879 1.40443 1.48927 2.37406 2.64604 3.07703 3.16670 3.29171 3.34002 3.56074 3.75458 3.96480 4.08802 4.20307 4.33261 4.37880 4.43235 4.47695 4.49997 4.54949 4.64133 4.72424 4.88216 4.92761 5.04147 5.07012 5.20493 5.30798 5.32666 5.36547 5.37678 5.40792 5.61436 5.69086 5.71437 5.82901 5.95361 6.05647 6.09680 6.23660 6.37233 6.75673 7.32160 8.86395 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.003637 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.713876 B = 7697.004131 C = 8410.962854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.057 3.943 10 C -0.063 4.063 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.128 4.128 14 C -0.055 4.055 15 C -0.048 4.048 16 C -0.126 4.126 17 C -0.101 4.101 18 C -0.120 4.120 19 C -0.115 4.115 20 C -0.095 4.095 21 C 0.084 3.916 22 N -0.668 5.668 23 C 0.084 3.916 24 C -0.127 4.127 25 H 0.266 0.734 26 H 0.005 0.995 27 H 0.001 0.999 28 H 0.116 0.884 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.361 0.639 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.386 -19.005 8.499 24.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.020 3.980 10 C -0.063 4.063 11 C -0.153 4.153 12 C -0.128 4.128 13 C -0.145 4.145 14 C -0.055 4.055 15 C -0.048 4.048 16 C -0.144 4.144 17 C -0.119 4.119 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.114 4.114 21 C -0.044 4.044 22 N -0.298 5.298 23 C -0.045 4.045 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.134 0.866 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.178 0.822 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.707 -18.330 8.429 23.843 hybrid contribution -1.096 0.797 -0.070 1.357 sum 11.611 -17.533 8.359 22.629 Atomic orbital electron populations 1.70072 1.07645 1.28078 1.51103 1.25923 0.95782 1.03083 0.94476 0.85503 0.78336 0.78092 0.79174 1.19168 1.20345 1.19409 1.21333 0.93003 0.91279 1.51267 0.92918 1.18094 0.92871 0.91184 0.95810 1.20330 0.97088 0.95154 0.93734 1.21262 0.99118 0.97640 0.97285 1.21332 0.96517 0.95684 0.99236 1.21382 1.01090 1.01186 0.90891 1.18870 0.97402 0.96065 0.93205 1.18804 0.97628 0.96460 0.91934 1.21373 1.00566 1.00307 0.92198 1.20592 0.97220 0.95820 0.98308 1.20969 0.97640 0.96920 0.96566 1.20793 0.98901 0.98599 0.93293 1.20651 0.96835 0.95613 0.98251 1.21430 0.96772 0.94836 0.91375 1.63469 1.37036 1.26892 1.02452 1.21427 0.91183 0.97239 0.94645 1.21097 0.98905 0.96992 0.97518 0.92482 0.97652 0.98068 0.86575 0.82832 0.82982 0.86016 0.84031 0.83796 0.90516 0.88474 0.82180 0.88672 0.90622 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -31.06 9.09 25.60 0.23 -30.83 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.06 3.16 5.10 29.10 0.15 3.31 16 10 C -0.06 -2.89 5.06 -19.90 -0.10 -2.99 16 11 C -0.13 -5.31 9.69 22.31 0.22 -5.09 16 12 C -0.11 -3.38 10.03 22.24 0.22 -3.16 16 13 C -0.13 -3.77 9.43 22.48 0.21 -3.56 16 14 C -0.06 -1.91 5.88 -20.04 -0.12 -2.03 16 15 C -0.05 -1.46 5.88 -20.04 -0.12 -1.58 16 16 C -0.13 -3.76 9.43 22.48 0.21 -3.55 16 17 C -0.10 -2.48 10.03 22.23 0.22 -2.26 16 18 C -0.12 -2.69 6.26 -19.61 -0.12 -2.81 16 19 C -0.12 -2.56 6.25 -19.69 -0.12 -2.68 16 20 C -0.10 -2.35 9.42 22.47 0.21 -2.14 16 21 C 0.08 1.31 7.45 85.50 0.64 1.94 16 22 N -0.67 -9.87 7.72 -514.61 -3.97 -13.84 16 23 C 0.08 1.32 7.45 85.50 0.64 1.96 16 24 C -0.13 -5.28 9.08 22.48 0.20 -5.07 16 25 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 27 H 0.00 0.06 8.08 -2.38 -0.02 0.04 16 28 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.15 3.27 6.21 -2.91 -0.02 3.26 16 31 H 0.12 3.78 6.21 -2.91 -0.02 3.76 16 32 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.14 2.84 6.21 -2.91 -0.02 2.82 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.36 3.25 8.92 -89.70 -0.80 2.45 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 4.62 6.21 -2.91 -0.02 4.61 16 Total: -1.00 -69.25 325.57 1.65 -67.60 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.27 Total: 15.41 kcal Atomic # 6 Polarization: -62.78 SS G_CDS: 3.04 Total: -59.74 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -3.69 Total: -70.25 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.25 1.65 -67.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242676413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.957 kcal (2) G-P(sol) polarization free energy of solvation -69.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds