Wall clock time and date at job start Wed Apr 15 2020 11:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30785 * 1 3 3 Si 1.86806 * 119.99718 * 2 1 4 4 H 1.48510 * 109.46823 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47177 * 299.99729 * 3 2 1 6 6 H 1.48498 * 109.47360 * 60.00119 * 3 2 1 7 7 C 1.40021 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00413 * 197.63670 * 7 2 1 9 9 C 1.41053 * 120.00011 * 17.64258 * 7 2 1 10 10 C 1.41302 * 120.55571 * 23.69322 * 9 7 2 11 11 C 1.36606 * 118.41844 * 180.23823 * 10 9 7 12 12 C 1.39894 * 119.46210 * 359.52424 * 11 10 9 13 13 C 1.47966 * 119.44928 * 180.23890 * 12 11 10 14 14 C 1.39610 * 120.14719 * 359.97171 * 13 12 11 15 15 C 1.37930 * 119.85460 * 179.72293 * 14 13 12 16 16 C 1.38391 * 120.14504 * 0.53428 * 15 14 13 17 17 C 1.50700 * 119.85220 * 179.74235 * 16 15 14 18 18 C 1.53776 * 113.61661 * 37.52123 * 17 16 15 19 19 C 1.53785 * 87.08024 * 220.01732 * 18 17 16 20 20 C 1.53777 * 87.08147 * 25.43106 * 19 18 17 21 21 C 1.38389 * 120.29442 * 359.76334 * 16 15 14 22 22 C 1.37942 * 120.14267 * 359.95542 * 21 16 15 23 23 N 1.33016 * 121.10311 * 0.48454 * 12 11 10 24 24 C 1.31269 * 121.72570 * 359.75367 * 23 12 11 25 25 H 0.97002 * 120.00211 * 0.02562 * 1 2 3 26 26 H 1.08008 * 120.79289 * 359.95387 * 10 9 7 27 27 H 1.07994 * 120.27035 * 179.73379 * 11 10 9 28 28 H 1.08002 * 120.07086 * 359.97223 * 14 13 12 29 29 H 1.07996 * 119.92978 * 180.29435 * 15 14 13 30 30 H 1.09003 * 112.84944 * 168.82402 * 17 16 15 31 31 H 1.08998 * 113.61229 * 334.56199 * 18 17 16 32 32 H 1.08996 * 113.61957 * 105.46561 * 18 17 16 33 33 H 1.08994 * 113.61461 * 270.88061 * 19 18 17 34 34 H 1.08996 * 113.61348 * 139.98018 * 19 18 17 35 35 H 1.09001 * 113.61411 * 220.02259 * 20 19 18 36 36 H 1.08999 * 113.69380 * 89.12867 * 20 19 18 37 37 H 1.07995 * 119.93145 * 179.97438 * 21 16 15 38 38 H 1.08002 * 120.06985 * 179.97438 * 22 21 16 39 39 H 1.07994 * 119.80070 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7019 1.3465 -0.0006 5 1 1.8831 2.3965 -1.2126 6 1 1.8831 2.3965 1.2125 7 6 2.0080 -1.2126 0.0005 8 1 3.0500 -1.2345 0.2839 9 6 1.3526 -2.4056 -0.3692 10 6 0.2048 -2.3692 -1.1925 11 6 -0.3983 -3.5504 -1.5197 12 6 0.1376 -4.7517 -1.0435 13 6 -0.5128 -6.0313 -1.4024 14 6 -1.6522 -6.0367 -2.2092 15 6 -2.2503 -7.2334 -2.5448 16 6 -1.7300 -8.4264 -2.0745 17 6 -2.3922 -9.7297 -2.4404 18 6 -2.9313 -9.7638 -3.8802 19 6 -4.1546 -10.5092 -3.3208 20 6 -3.8542 -9.8301 -1.9742 21 6 -0.6044 -8.4278 -1.2692 22 6 0.0068 -7.2384 -0.9310 23 7 1.2194 -4.7625 -0.2695 24 6 1.8318 -3.6541 0.0763 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1890 -1.4295 -1.5509 27 1 -1.2798 -3.5571 -2.1436 28 1 -2.0620 -5.1060 -2.5731 29 1 -3.1290 -7.2392 -3.1727 30 1 -1.7895 -10.5991 -2.1778 31 1 -3.1666 -8.7782 -4.2817 32 1 -2.3264 -10.3650 -4.5589 33 1 -4.0341 -11.5922 -3.3001 34 1 -5.0984 -10.1958 -3.7669 35 1 -3.9942 -10.4849 -1.1141 36 1 -4.3413 -8.8625 -1.8533 37 1 -0.2036 -9.3622 -0.9052 38 1 0.8848 -7.2408 -0.3022 39 1 2.7076 -3.6990 0.7065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244942741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:02 Heat of formation + Delta-G solvation = 53.674326 kcal Electronic energy + Delta-G solvation = -19908.229121 eV Core-core repulsion = 16972.935714 eV Total energy + Delta-G solvation = -2935.293407 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -39.74952 -38.54771 -37.12609 -34.30405 -31.71284 -30.98155 -30.14832 -29.27033 -26.26177 -25.62920 -24.43279 -22.79680 -21.98246 -21.05152 -20.29943 -18.98029 -17.53674 -16.77811 -15.75992 -15.58319 -15.18438 -14.73870 -14.35114 -13.71156 -13.57391 -13.33365 -13.09712 -12.86305 -12.56719 -12.51990 -12.42784 -11.96675 -11.73650 -11.60084 -11.39748 -11.29661 -11.00144 -10.76277 -10.69359 -10.43449 -10.32359 -10.07022 -9.89338 -9.55297 -8.54641 -8.41028 -8.35836 -8.10603 -7.27495 -7.00350 -4.58303 1.56368 1.97567 2.63746 2.90905 2.93711 2.98255 3.13343 3.71195 4.17729 4.58979 4.61744 4.69491 4.71721 5.05615 5.26634 5.35665 5.39364 5.57822 5.61913 5.64288 5.64767 5.74410 5.81866 5.91031 5.95425 6.04223 6.10123 6.21603 6.39071 6.49454 6.52705 6.62777 6.71185 6.78843 6.86263 6.99709 7.10400 7.14904 7.32870 7.50201 7.69379 7.75893 7.86004 8.28715 8.48005 8.58333 9.53330 9.84393 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.047885 B = 0.003060 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.596025 B = 9149.509838 C = 9537.564334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.433 4.433 8 H 0.088 0.912 9 C 0.068 3.932 10 C -0.146 4.146 11 C -0.121 4.121 12 C -0.009 4.009 13 C 0.018 3.982 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.106 4.106 17 C -0.065 4.065 18 C -0.136 4.136 19 C -0.145 4.145 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.112 4.112 23 N -0.448 5.448 24 C -0.018 4.018 25 H 0.287 0.713 26 H 0.127 0.873 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.127 0.873 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -10.616 -4.849 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.170 4.170 11 C -0.141 4.141 12 C -0.143 4.143 13 C 0.018 3.982 14 C -0.152 4.152 15 C -0.130 4.130 16 C -0.106 4.106 17 C -0.084 4.084 18 C -0.173 4.173 19 C -0.182 4.182 20 C -0.170 4.170 21 C -0.133 4.133 22 C -0.131 4.131 23 N -0.155 5.155 24 C -0.183 4.183 25 H 0.098 0.902 26 H 0.145 0.855 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.145 0.855 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.487 -11.243 -4.549 13.312 hybrid contribution -0.038 1.744 -0.200 1.756 sum -5.525 -9.499 -4.750 11.971 Atomic orbital electron populations 1.69789 1.07916 1.30045 1.32096 1.26103 0.94848 1.02024 0.91949 0.86130 0.81057 0.80046 0.78885 1.17992 1.19392 1.19620 1.19718 0.98350 0.90938 1.37140 0.89430 1.18625 0.92029 0.93702 0.89285 1.21335 0.98721 0.97037 0.99955 1.21312 0.99210 0.93414 1.00193 1.18810 0.97791 0.90779 1.06908 1.18699 0.93050 0.92219 0.94271 1.21156 0.96475 0.97660 0.99933 1.20693 0.99821 0.91889 1.00621 1.19526 0.96897 0.93922 1.00284 1.21404 0.95164 0.95488 0.96319 1.23045 0.97109 1.00980 0.96156 1.22840 0.98412 0.99581 0.97361 1.22994 0.95946 1.01075 0.96965 1.20878 0.95941 0.97617 0.98899 1.21244 1.00377 0.91226 1.00235 1.66913 1.06750 1.32176 1.09669 1.22454 1.02707 0.87809 1.05334 0.90220 0.85546 0.88085 0.86322 0.86932 0.89147 0.89702 0.91688 0.90449 0.91659 0.91708 0.89885 0.87061 0.85516 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.68 10.92 55.55 0.61 -18.08 16 2 C 0.07 1.67 5.17 -17.33 -0.09 1.58 16 3 Si 0.92 17.22 29.59 -169.99 -5.03 12.18 16 4 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.43 -10.71 9.06 -37.85 -0.34 -11.05 16 8 H 0.09 2.04 7.91 -52.48 -0.41 1.63 16 9 C 0.07 1.76 5.59 -106.64 -0.60 1.16 16 10 C -0.15 -3.67 8.74 -39.01 -0.34 -4.01 16 11 C -0.12 -2.84 9.38 -39.55 -0.37 -3.21 16 12 C -0.01 -0.22 6.74 -82.75 -0.56 -0.77 16 13 C 0.02 0.38 5.88 -104.89 -0.62 -0.24 16 14 C -0.13 -2.39 9.42 -39.18 -0.37 -2.76 16 15 C -0.11 -1.72 8.58 -39.64 -0.34 -2.06 16 16 C -0.11 -1.56 5.30 -104.51 -0.55 -2.12 16 17 C -0.07 -0.76 3.98 -90.96 -0.36 -1.12 16 18 C -0.14 -1.38 7.45 -25.92 -0.19 -1.58 16 19 C -0.14 -1.29 8.08 -25.92 -0.21 -1.50 16 20 C -0.13 -1.37 7.55 -25.92 -0.20 -1.57 16 21 C -0.12 -1.84 9.69 -39.63 -0.38 -2.23 16 22 C -0.11 -2.13 9.57 -39.18 -0.38 -2.50 16 23 N -0.45 -11.07 9.39 -9.10 -0.09 -11.15 16 24 C -0.02 -0.44 10.97 -16.76 -0.18 -0.62 16 25 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 26 H 0.13 3.20 6.19 -52.48 -0.32 2.88 16 27 H 0.10 2.09 6.15 -52.49 -0.32 1.77 16 28 H 0.12 2.01 6.15 -52.49 -0.32 1.69 16 29 H 0.11 1.46 6.64 -52.49 -0.35 1.11 16 30 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 31 H 0.08 0.89 6.30 -51.93 -0.33 0.56 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.91 7.72 -51.93 -0.40 0.51 16 37 H 0.11 1.51 8.05 -52.49 -0.42 1.08 16 38 H 0.13 2.46 7.52 -52.49 -0.39 2.07 16 39 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -26.79 322.02 -10.69 -37.47 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.95 Total: 9.31 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: -6.08 Total: -34.59 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: 0.52 Total: -29.23 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.79 -10.69 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244942741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.149 kcal (2) G-P(sol) polarization free energy of solvation -26.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds