Wall clock time and date at job start Wed Apr 15 2020 11:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48506 * 109.46969 * 275.39836 * 3 2 1 5 5 H 1.48503 * 109.47172 * 35.39392 * 3 2 1 6 6 H 1.48497 * 109.47403 * 155.39732 * 3 2 1 7 7 C 1.40049 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99471 * 341.61519 * 7 2 1 9 9 C 1.41520 * 120.00095 * 161.61900 * 7 2 1 10 10 C 1.41139 * 120.99042 * 330.84335 * 9 7 2 11 11 C 1.37743 * 119.07424 * 180.02562 * 10 9 7 12 12 N 1.31920 * 121.15582 * 359.74367 * 11 10 9 13 13 C 1.32791 * 122.20510 * 0.53005 * 12 11 10 14 14 C 1.48366 * 119.61037 * 179.74842 * 13 12 11 15 15 C 1.39346 * 120.12324 * 359.72690 * 14 13 12 16 16 C 1.38019 * 119.87791 * 179.97438 * 15 14 13 17 17 C 1.38317 * 120.12167 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.87843 * 179.74179 * 17 16 15 19 19 C 1.53776 * 113.61992 * 217.49611 * 18 17 16 20 20 C 1.53778 * 87.08459 * 220.02200 * 19 18 17 21 21 C 1.53782 * 87.08268 * 25.43008 * 20 19 18 22 22 C 1.38328 * 120.24891 * 0.02562 * 17 16 15 23 23 C 1.38014 * 120.12026 * 0.02562 * 22 17 16 24 24 C 1.38896 * 120.77929 * 359.47306 * 13 12 11 25 25 H 0.96997 * 120.00445 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.46160 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.42038 * 179.97438 * 11 10 9 28 28 H 1.08007 * 120.06257 * 0.02562 * 15 14 13 29 29 H 1.08000 * 119.93906 * 179.97438 * 16 15 14 30 30 H 1.09000 * 112.84682 * 348.80677 * 18 17 16 31 31 H 1.08998 * 113.61499 * 334.57200 * 19 18 17 32 32 H 1.09003 * 113.61355 * 105.47094 * 19 18 17 33 33 H 1.09007 * 113.60947 * 270.88471 * 20 19 18 34 34 H 1.08994 * 113.61789 * 139.98399 * 20 19 18 35 35 H 1.08991 * 113.61706 * 220.02290 * 21 20 19 36 36 H 1.09003 * 113.68833 * 89.12731 * 21 20 19 37 37 H 1.07995 * 119.94159 * 180.02562 * 22 17 16 38 38 H 1.07995 * 120.06370 * 180.02562 * 23 22 17 39 39 H 1.07994 * 120.62308 * 180.23331 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3747 2.1123 -1.3939 5 1 1.5003 2.6171 0.8109 6 1 3.5912 1.4101 0.5829 7 6 2.0077 -1.2128 -0.0005 8 1 1.5090 -2.1244 0.2941 9 6 3.3687 -1.2438 -0.3870 10 6 3.8833 -0.3092 -1.3111 11 6 5.2141 -0.3758 -1.6598 12 7 6.0103 -1.2914 -1.1421 13 6 5.5765 -2.1970 -0.2731 14 6 6.5212 -3.2044 0.2690 15 6 7.8543 -3.2025 -0.1368 16 6 8.7289 -4.1416 0.3711 17 6 8.2845 -5.0832 1.2817 18 6 9.2428 -6.1098 1.8283 19 6 8.6127 -7.4989 2.0228 20 6 9.4115 -7.5911 3.3336 21 6 9.3997 -6.0535 3.3571 22 6 6.9623 -5.0898 1.6880 23 6 6.0787 -4.1560 1.1858 24 6 4.2500 -2.2087 0.1386 25 1 -0.4851 0.8400 0.0004 26 1 3.2422 0.4472 -1.7394 27 1 5.6136 0.3363 -2.3667 28 1 8.2027 -2.4669 -0.8468 29 1 9.7623 -4.1413 0.0570 30 1 10.1918 -6.1304 1.2925 31 1 7.5331 -7.4719 2.1704 32 1 8.9201 -8.2269 1.2720 33 1 10.4066 -8.0183 3.2093 34 1 8.8545 -8.0446 4.1534 35 1 10.3425 -5.6146 3.6834 36 1 8.5358 -5.6299 3.8694 37 1 6.6207 -5.8270 2.3995 38 1 5.0467 -4.1618 1.5039 39 1 3.9008 -2.9440 0.8483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244943073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:09 Heat of formation + Delta-G solvation = 56.886284 kcal Electronic energy + Delta-G solvation = -20072.003397 eV Core-core repulsion = 17136.849271 eV Total energy + Delta-G solvation = -2935.154126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -39.94031 -38.76103 -37.31517 -34.11992 -32.08807 -31.47508 -30.50635 -28.90521 -26.04332 -25.71459 -25.31966 -22.81279 -22.39276 -20.95806 -20.51312 -19.10067 -17.80254 -16.62726 -15.83450 -15.58002 -15.30184 -14.89149 -14.41386 -13.99919 -13.86149 -13.43440 -13.28570 -13.08275 -12.89791 -12.72511 -12.55300 -12.48519 -11.81741 -11.59019 -11.50175 -11.03397 -10.91213 -10.80353 -10.70683 -10.50552 -10.46897 -10.17549 -9.87600 -9.45416 -8.81241 -8.58421 -8.32477 -8.18404 -7.34329 -7.11941 -4.76803 1.30342 1.77703 2.49864 2.67866 3.02914 3.12805 3.23232 3.85927 4.05123 4.51591 4.55138 4.58473 4.62964 4.92584 5.03966 5.11567 5.23127 5.36198 5.37785 5.51406 5.55998 5.65273 5.74072 5.76339 5.82478 5.84929 5.91756 6.08996 6.23243 6.30155 6.32880 6.40900 6.51049 6.54482 6.65965 6.89222 6.93470 6.97232 7.05945 7.25974 7.34295 7.59077 7.87050 8.15644 8.38590 8.59708 9.27779 9.89221 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032190 B = 0.003582 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.625800 B = 7814.802334 C = 8325.150692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.439 4.439 8 H 0.095 0.905 9 C 0.109 3.891 10 C -0.287 4.287 11 C 0.120 3.880 12 N -0.565 5.565 13 C 0.160 3.840 14 C -0.022 4.022 15 C -0.088 4.088 16 C -0.125 4.125 17 C -0.082 4.082 18 C -0.070 4.070 19 C -0.135 4.135 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.106 4.106 24 C -0.237 4.237 25 H 0.289 0.711 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.583 -8.740 4.303 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.169 1.169 7 C -0.469 4.469 8 H 0.113 0.887 9 C 0.101 3.899 10 C -0.310 4.310 11 C -0.035 4.035 12 N -0.280 5.280 13 C 0.029 3.971 14 C -0.023 4.023 15 C -0.106 4.106 16 C -0.143 4.143 17 C -0.082 4.082 18 C -0.088 4.088 19 C -0.173 4.173 20 C -0.182 4.182 21 C -0.169 4.169 22 C -0.139 4.139 23 C -0.124 4.124 24 C -0.260 4.260 25 H 0.099 0.901 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.188 -8.668 4.068 17.117 hybrid contribution -0.882 0.902 0.137 1.269 sum 13.306 -7.766 4.205 15.970 Atomic orbital electron populations 1.69641 1.08194 1.30696 1.33444 1.26192 0.94735 1.01943 0.90543 0.86266 0.81231 0.79459 0.79088 1.19279 1.21510 1.16890 1.19513 0.92792 0.96353 1.38254 0.88746 1.17864 0.93082 0.90158 0.88795 1.21959 0.97185 1.06141 1.05668 1.21895 0.90373 0.94795 0.96403 1.67338 1.38517 1.07132 1.15020 1.19244 0.90855 0.93016 0.93998 1.18785 0.93086 0.94409 0.96045 1.21305 0.92530 0.97882 0.98904 1.20940 0.99290 0.95932 0.98180 1.19663 0.94151 0.96738 0.97684 1.21481 0.97750 0.93625 0.95976 1.23047 1.00320 0.96412 0.97482 1.22840 1.00494 0.96662 0.98164 1.22990 1.02320 0.96111 0.95499 1.20788 0.92934 0.99290 1.00919 1.21295 0.99997 0.94494 0.96659 1.21916 0.93086 1.05126 1.05837 0.90077 0.87398 0.85467 0.85049 0.86615 0.88899 0.89580 0.91541 0.90369 0.91514 0.91580 0.89786 0.86376 0.85504 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.49 13.92 55.55 0.77 -19.72 16 2 C 0.09 2.22 5.42 -17.34 -0.09 2.12 16 3 Si 0.91 20.28 24.54 -169.99 -4.17 16.11 16 4 H -0.27 -5.70 6.70 56.52 0.38 -5.32 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.25 -5.70 6.85 56.52 0.39 -5.31 16 7 C -0.44 -11.58 9.63 -37.65 -0.36 -11.95 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.11 2.75 5.13 -106.56 -0.55 2.20 16 10 C -0.29 -6.87 7.29 -38.66 -0.28 -7.15 16 11 C 0.12 2.68 11.15 -17.69 -0.20 2.48 16 12 N -0.57 -12.91 9.40 -9.94 -0.09 -13.00 16 13 C 0.16 3.59 6.73 -83.04 -0.56 3.03 16 14 C -0.02 -0.43 5.88 -104.90 -0.62 -1.05 16 15 C -0.09 -1.51 9.57 -39.25 -0.38 -1.88 16 16 C -0.13 -1.80 9.69 -39.63 -0.38 -2.18 16 17 C -0.08 -1.10 5.29 -104.56 -0.55 -1.65 16 18 C -0.07 -0.73 3.98 -90.96 -0.36 -1.09 16 19 C -0.14 -1.25 7.45 -25.92 -0.19 -1.44 16 20 C -0.14 -1.16 8.08 -25.92 -0.21 -1.37 16 21 C -0.13 -1.23 7.55 -25.92 -0.20 -1.43 16 22 C -0.12 -1.71 8.60 -39.63 -0.34 -2.05 16 23 C -0.11 -1.77 9.41 -39.25 -0.37 -2.14 16 24 C -0.24 -5.56 9.25 -38.35 -0.35 -5.92 16 25 H 0.29 6.68 8.29 -40.82 -0.34 6.34 16 26 H 0.11 2.52 4.76 -52.48 -0.25 2.27 16 27 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 28 H 0.13 2.29 7.53 -52.48 -0.40 1.90 16 29 H 0.12 1.37 8.05 -52.49 -0.42 0.95 16 30 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 31 H 0.09 0.82 6.29 -51.93 -0.33 0.50 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.84 7.73 -51.93 -0.40 0.43 16 37 H 0.12 1.39 6.64 -52.49 -0.35 1.04 16 38 H 0.13 2.06 6.18 -52.49 -0.32 1.73 16 39 H 0.11 2.42 6.18 -52.49 -0.32 2.09 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -27.64 317.04 -9.63 -37.27 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.92 Total: 6.03 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -6.00 Total: -31.46 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.68 Total: -32.72 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.17 Total: 16.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.64 -9.63 -37.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244943073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.152 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds