Wall clock time and date at job start Wed Apr 15 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48506 * 109.46969 * 275.39836 * 3 2 1 5 5 H 1.48503 * 109.47172 * 35.39392 * 3 2 1 6 6 H 1.48497 * 109.47403 * 155.39732 * 3 2 1 7 7 C 1.40049 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99471 * 341.61519 * 7 2 1 9 9 C 1.41520 * 120.00095 * 161.61900 * 7 2 1 10 10 C 1.41139 * 120.99042 * 330.84335 * 9 7 2 11 11 C 1.37743 * 119.07424 * 180.02562 * 10 9 7 12 12 N 1.31920 * 121.15582 * 359.74367 * 11 10 9 13 13 C 1.32791 * 122.20510 * 0.53005 * 12 11 10 14 14 C 1.48366 * 119.61037 * 179.74842 * 13 12 11 15 15 C 1.39346 * 120.12324 * 359.72690 * 14 13 12 16 16 C 1.38019 * 119.87791 * 179.97438 * 15 14 13 17 17 C 1.38317 * 120.12167 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.87843 * 179.74179 * 17 16 15 19 19 C 1.53776 * 113.61992 * 217.49611 * 18 17 16 20 20 C 1.53778 * 87.08459 * 220.02200 * 19 18 17 21 21 C 1.53782 * 87.08268 * 25.43008 * 20 19 18 22 22 C 1.38328 * 120.24891 * 0.02562 * 17 16 15 23 23 C 1.38014 * 120.12026 * 0.02562 * 22 17 16 24 24 C 1.38896 * 120.77929 * 359.47306 * 13 12 11 25 25 H 0.96997 * 120.00445 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.46160 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.42038 * 179.97438 * 11 10 9 28 28 H 1.08007 * 120.06257 * 0.02562 * 15 14 13 29 29 H 1.08000 * 119.93906 * 179.97438 * 16 15 14 30 30 H 1.09000 * 112.84682 * 348.80677 * 18 17 16 31 31 H 1.08998 * 113.61499 * 334.57200 * 19 18 17 32 32 H 1.09003 * 113.61355 * 105.47094 * 19 18 17 33 33 H 1.09007 * 113.60947 * 270.88471 * 20 19 18 34 34 H 1.08994 * 113.61789 * 139.98399 * 20 19 18 35 35 H 1.08991 * 113.61706 * 220.02290 * 21 20 19 36 36 H 1.09003 * 113.68833 * 89.12731 * 21 20 19 37 37 H 1.07995 * 119.94159 * 180.02562 * 22 17 16 38 38 H 1.07995 * 120.06370 * 180.02562 * 23 22 17 39 39 H 1.07994 * 120.62308 * 180.23331 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3747 2.1123 -1.3939 5 1 1.5003 2.6171 0.8109 6 1 3.5912 1.4101 0.5829 7 6 2.0077 -1.2128 -0.0005 8 1 1.5090 -2.1244 0.2941 9 6 3.3687 -1.2438 -0.3870 10 6 3.8833 -0.3092 -1.3111 11 6 5.2141 -0.3758 -1.6598 12 7 6.0103 -1.2914 -1.1421 13 6 5.5765 -2.1970 -0.2731 14 6 6.5212 -3.2044 0.2690 15 6 7.8543 -3.2025 -0.1368 16 6 8.7289 -4.1416 0.3711 17 6 8.2845 -5.0832 1.2817 18 6 9.2428 -6.1098 1.8283 19 6 8.6127 -7.4989 2.0228 20 6 9.4115 -7.5911 3.3336 21 6 9.3997 -6.0535 3.3571 22 6 6.9623 -5.0898 1.6880 23 6 6.0787 -4.1560 1.1858 24 6 4.2500 -2.2087 0.1386 25 1 -0.4851 0.8400 0.0004 26 1 3.2422 0.4472 -1.7394 27 1 5.6136 0.3363 -2.3667 28 1 8.2027 -2.4669 -0.8468 29 1 9.7623 -4.1413 0.0570 30 1 10.1918 -6.1304 1.2925 31 1 7.5331 -7.4719 2.1704 32 1 8.9201 -8.2269 1.2720 33 1 10.4066 -8.0183 3.2093 34 1 8.8545 -8.0446 4.1534 35 1 10.3425 -5.6146 3.6834 36 1 8.5358 -5.6299 3.8694 37 1 6.6207 -5.8270 2.3995 38 1 5.0467 -4.1618 1.5039 39 1 3.9008 -2.9440 0.8483 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244943073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:06 Heat of formation + Delta-G solvation = 44.130072 kcal Electronic energy + Delta-G solvation = -20072.556548 eV Core-core repulsion = 17136.849271 eV Total energy + Delta-G solvation = -2935.707277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 4.40 seconds Orbital eigenvalues (eV) -41.10223 -40.26705 -38.46678 -36.00135 -33.60145 -33.23726 -31.78708 -30.36551 -27.92588 -26.45165 -26.40221 -24.29077 -23.71943 -22.54201 -21.92819 -19.95458 -19.56871 -18.05908 -17.32361 -16.85793 -16.79165 -16.17450 -16.00847 -15.34963 -15.21598 -14.87881 -14.80245 -14.72023 -14.21017 -14.00151 -13.63904 -13.43593 -13.27330 -12.86400 -12.85296 -12.78349 -12.50346 -12.34762 -11.98095 -11.73543 -11.37597 -11.31217 -11.25222 -11.01335 -10.29166 -10.19956 -10.00738 -9.81115 -9.03770 -8.87869 -6.76281 -0.14148 0.54689 0.67521 1.03908 1.23260 1.36709 1.44608 2.05500 2.52171 2.90984 3.47740 3.53610 3.75882 3.79636 3.92321 3.97422 4.15094 4.16350 4.21751 4.31436 4.46485 4.51676 4.58027 4.69498 4.77164 4.86626 4.90906 4.93146 4.97240 5.09122 5.14549 5.15449 5.17851 5.26041 5.30606 5.34238 5.49459 5.58946 5.65682 5.78459 5.81953 6.00719 6.12468 6.20451 6.47657 6.63072 7.46854 8.03512 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.032190 B = 0.003582 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.625800 B = 7814.802334 C = 8325.150692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.056 3.944 3 Si 0.966 3.034 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.474 4.474 8 H 0.065 0.935 9 C 0.096 3.904 10 C -0.302 4.302 11 C 0.120 3.880 12 N -0.568 5.568 13 C 0.163 3.837 14 C -0.062 4.062 15 C -0.093 4.093 16 C -0.124 4.124 17 C -0.067 4.067 18 C -0.075 4.075 19 C -0.137 4.137 20 C -0.134 4.134 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.260 4.260 25 H 0.300 0.700 26 H 0.114 0.886 27 H 0.166 0.834 28 H 0.125 0.875 29 H 0.146 0.854 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.143 0.857 38 H 0.122 0.878 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.619 -9.377 4.623 19.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.162 4.162 3 Si 0.789 3.211 4 H -0.173 1.173 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.505 4.505 8 H 0.083 0.917 9 C 0.088 3.912 10 C -0.324 4.324 11 C -0.035 4.035 12 N -0.282 5.282 13 C 0.032 3.968 14 C -0.063 4.063 15 C -0.112 4.112 16 C -0.141 4.141 17 C -0.067 4.067 18 C -0.093 4.093 19 C -0.175 4.175 20 C -0.172 4.172 21 C -0.170 4.170 22 C -0.137 4.137 23 C -0.132 4.132 24 C -0.282 4.282 25 H 0.111 0.889 26 H 0.132 0.868 27 H 0.183 0.817 28 H 0.143 0.857 29 H 0.164 0.836 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.206 -9.312 4.384 20.050 hybrid contribution -1.633 0.902 0.073 1.866 sum 15.574 -8.411 4.457 18.252 Atomic orbital electron populations 1.69647 1.09140 1.32116 1.34574 1.26821 0.95338 1.04191 0.89887 0.85480 0.79158 0.76409 0.80083 1.17341 1.19704 1.18734 1.19496 0.93853 0.96145 1.40960 0.91727 1.18057 0.92851 0.91144 0.89122 1.22104 0.98171 1.06283 1.05855 1.22489 0.89787 0.94940 0.96289 1.67488 1.38580 1.07215 1.14961 1.19757 0.91091 0.93064 0.92918 1.18792 0.93635 0.95360 0.98540 1.21335 0.92126 0.98653 0.99086 1.21254 1.00244 0.94950 0.97700 1.20097 0.94304 0.96377 0.95968 1.21657 0.97706 0.93167 0.96743 1.23069 1.00191 0.95713 0.98502 1.22818 1.01112 0.95641 0.97591 1.22994 1.02464 0.97292 0.94296 1.21053 0.93014 0.98800 1.00802 1.21372 1.00420 0.94827 0.96544 1.22085 0.93786 1.05535 1.06778 0.88933 0.86826 0.81691 0.85713 0.83614 0.87305 0.90098 0.90767 0.88979 0.90881 0.90717 0.90617 0.83972 0.86040 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.92 13.92 21.84 0.30 -43.62 16 2 C 0.06 2.91 5.42 85.30 0.46 3.38 16 3 Si 0.97 41.86 24.54 68.60 1.68 43.54 16 4 H -0.25 -9.97 6.70 99.48 0.67 -9.30 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.26 -12.06 6.85 99.48 0.68 -11.38 16 7 C -0.47 -26.37 9.63 23.52 0.23 -26.15 16 8 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 9 C 0.10 5.02 5.13 -21.12 -0.11 4.91 16 10 C -0.30 -14.49 7.29 22.86 0.17 -14.33 16 11 C 0.12 5.23 11.15 84.56 0.94 6.17 16 12 N -0.57 -25.71 9.40 -185.37 -1.74 -27.45 16 13 C 0.16 7.43 6.73 41.86 0.28 7.71 16 14 C -0.06 -2.39 5.88 -20.04 -0.12 -2.51 16 15 C -0.09 -3.11 9.57 22.48 0.22 -2.89 16 16 C -0.12 -3.22 9.69 22.24 0.22 -3.01 16 17 C -0.07 -1.60 5.29 -19.82 -0.10 -1.71 16 18 C -0.07 -1.27 3.98 -11.01 -0.04 -1.31 16 19 C -0.14 -2.07 7.45 31.12 0.23 -1.83 16 20 C -0.13 -1.66 8.08 31.12 0.25 -1.41 16 21 C -0.13 -2.02 7.55 31.12 0.23 -1.79 16 22 C -0.12 -3.14 8.60 22.24 0.19 -2.95 16 23 C -0.11 -3.77 9.41 22.49 0.21 -3.56 16 24 C -0.26 -12.67 9.25 23.07 0.21 -12.46 16 25 H 0.30 14.08 8.29 -92.71 -0.77 13.31 16 26 H 0.11 5.24 4.76 -2.91 -0.01 5.22 16 27 H 0.17 5.82 8.06 -2.91 -0.02 5.80 16 28 H 0.12 4.25 7.53 -2.91 -0.02 4.22 16 29 H 0.15 2.89 8.05 -2.91 -0.02 2.87 16 30 H 0.11 1.57 8.09 -2.39 -0.02 1.55 16 31 H 0.08 1.30 6.29 -2.39 -0.02 1.29 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.29 7.73 -2.39 -0.02 1.27 16 37 H 0.14 3.03 6.64 -2.91 -0.02 3.01 16 38 H 0.12 4.08 6.18 -2.91 -0.02 4.06 16 39 H 0.12 5.39 6.18 -2.91 -0.02 5.37 16 Total: -1.00 -61.32 317.04 4.71 -56.61 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.99 Total: 24.66 kcal Atomic # 6 Polarization: -57.21 SS G_CDS: 3.47 Total: -53.74 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.44 Total: -71.07 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.68 Total: 43.54 kcal Total: -61.32 4.71 -56.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244943073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.742 kcal (2) G-P(sol) polarization free energy of solvation -61.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.40 seconds