Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99851 * 2 1 4 4 H 1.48498 * 109.47496 * 270.28262 * 3 2 1 5 5 H 1.48503 * 109.47094 * 30.28318 * 3 2 1 6 6 H 1.48499 * 109.47058 * 150.27668 * 3 2 1 7 7 C 1.38806 * 119.99721 * 180.28392 * 2 1 3 8 8 H 1.08009 * 119.99591 * 179.72150 * 7 2 1 9 9 N 1.36935 * 120.00653 * 359.71751 * 7 2 1 10 10 C 1.47430 * 125.64518 * 13.92606 * 9 7 2 11 11 C 1.54909 * 104.82970 * 155.83252 * 10 9 7 12 12 C 1.55160 * 101.58158 * 37.01363 * 11 10 9 13 13 C 1.47023 * 125.65282 * 193.61902 * 9 7 2 14 14 H 1.08999 * 109.87813 * 300.51206 * 13 9 7 15 15 C 1.53003 * 109.87810 * 61.67679 * 13 9 7 16 16 C 1.53006 * 109.46683 * 185.36058 * 15 13 9 17 17 H 1.09002 * 109.47065 * 303.86760 * 16 15 13 18 18 O 1.42896 * 109.46880 * 63.86560 * 16 15 13 19 19 C 1.50693 * 109.47005 * 183.86763 * 16 15 13 20 20 C 1.38244 * 119.97244 * 279.73032 * 19 16 15 21 21 C 1.38201 * 120.02579 * 179.72690 * 20 19 16 22 22 C 1.38459 * 119.97279 * 0.56664 * 21 20 19 23 23 F 1.35107 * 120.02764 * 179.68437 * 22 21 20 24 24 C 1.38466 * 119.94937 * 359.70188 * 22 21 20 25 25 C 1.38197 * 119.96936 * 0.02562 * 24 22 21 26 26 H 0.96997 * 119.99750 * 359.71441 * 1 2 3 27 27 H 1.08993 * 110.36899 * 274.67313 * 10 9 7 28 28 H 1.09008 * 110.36257 * 36.89060 * 10 9 7 29 29 H 1.09003 * 111.00208 * 155.08532 * 11 10 9 30 30 H 1.08993 * 111.00733 * 278.93336 * 11 10 9 31 31 H 1.08999 * 110.71950 * 82.85599 * 12 11 10 32 32 H 1.09003 * 110.71708 * 205.95558 * 12 11 10 33 33 H 1.08996 * 109.47594 * 305.36165 * 15 13 9 34 34 H 1.08999 * 109.46968 * 65.36543 * 15 13 9 35 35 H 0.96708 * 113.99901 * 60.00165 * 18 16 15 36 36 H 1.08000 * 119.99253 * 359.97296 * 20 19 16 37 37 H 1.08003 * 120.01590 * 180.28930 * 21 20 19 38 38 H 1.07993 * 120.01279 * 180.02562 * 24 22 21 39 39 H 1.08008 * 119.98468 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0500 -1.4000 5 1 1.4506 2.6509 0.7060 6 1 3.5507 1.4385 0.6942 7 6 2.0103 -1.2021 -0.0060 8 1 3.0903 -1.2021 -0.0105 9 7 1.3257 -2.3881 -0.0060 10 6 -0.1122 -2.5501 -0.2886 11 6 -0.2586 -4.0143 -0.7726 12 6 0.7671 -4.7458 0.1331 13 6 1.9040 -3.7114 0.2696 14 1 2.6933 -3.9281 -0.4503 15 6 2.4682 -3.7468 1.6913 16 6 3.1848 -5.0788 1.9225 17 1 2.4968 -5.9006 1.7243 18 8 4.3072 -5.1747 1.0434 19 6 3.6579 -5.1532 3.3513 20 6 4.8207 -4.5074 3.7283 21 6 5.2527 -4.5702 5.0396 22 6 4.5266 -5.2900 5.9733 23 9 4.9513 -5.3574 7.2541 24 6 3.3651 -5.9410 5.5934 25 6 2.9322 -5.8720 4.2828 26 1 -0.4849 0.8400 0.0042 27 1 -0.6972 -2.3896 0.6169 28 1 -0.4256 -1.8574 -1.0698 29 1 -1.2687 -4.3846 -0.5971 30 1 0.0126 -4.1072 -1.8242 31 1 0.3296 -4.9739 1.1051 32 1 1.1278 -5.6546 -0.3487 33 1 3.1742 -2.9268 1.8226 34 1 1.6537 -3.6432 2.4081 35 1 4.9623 -4.4735 1.1639 36 1 5.3897 -3.9503 2.9987 37 1 6.1586 -4.0618 5.3349 38 1 2.7977 -6.5023 6.3209 39 1 2.0259 -6.3794 3.9862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134814026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = -56.029889 kcal Electronic energy + Delta-G solvation = -21743.198843 eV Core-core repulsion = 18372.379080 eV Total energy + Delta-G solvation = -3370.819764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.97476 -39.68988 -37.80511 -36.31810 -32.62970 -31.76758 -31.17521 -30.01729 -29.13800 -26.00420 -24.54561 -23.31708 -22.91109 -21.14509 -20.11874 -19.27151 -17.94086 -16.99450 -16.55256 -16.46332 -15.67920 -15.47326 -14.86484 -14.69055 -14.32548 -13.97912 -13.80762 -13.63904 -13.18496 -12.91113 -12.68691 -12.34680 -11.97465 -11.91476 -11.49615 -11.31693 -11.08501 -10.94313 -10.85999 -10.67306 -10.18054 -10.05853 -9.96839 -9.73604 -9.62783 -9.58046 -9.21118 -8.61569 -8.54337 -6.75237 -5.73275 -3.07952 1.03544 1.12919 3.38360 3.43504 3.45404 3.46949 4.15597 4.47790 4.57964 4.63774 4.64958 4.77179 5.13802 5.17134 5.36020 5.43379 5.49622 5.65823 5.69324 5.77682 5.80483 5.86881 5.97641 6.00428 6.11545 6.21896 6.31338 6.36373 6.47235 6.59262 6.63342 6.73835 6.77564 6.90840 7.20016 7.57036 7.63934 7.76384 7.82072 8.31192 9.21769 9.83662 10.53232 11.38840 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.004792 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.510815 B = 5842.125761 C = 6749.010104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.073 0.927 9 N -0.597 5.597 10 C 0.172 3.828 11 C -0.150 4.150 12 C -0.127 4.127 13 C 0.165 3.835 14 H 0.042 0.958 15 C -0.150 4.150 16 C 0.146 3.854 17 H 0.106 0.894 18 O -0.554 6.554 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.150 4.150 22 C 0.088 3.912 23 F -0.144 7.144 24 C -0.152 4.152 25 C -0.084 4.084 26 H 0.252 0.748 27 H 0.022 0.978 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.372 0.628 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -12.091 7.496 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.091 0.909 9 N -0.321 5.321 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.165 4.165 13 C 0.058 3.942 14 H 0.059 0.941 15 C -0.190 4.190 16 C 0.087 3.913 17 H 0.123 0.877 18 O -0.359 6.359 19 C -0.114 4.114 20 C -0.101 4.101 21 C -0.168 4.168 22 C 0.068 3.932 23 F -0.123 7.123 24 C -0.170 4.170 25 C -0.102 4.102 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.219 0.781 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.799 -12.361 7.320 15.493 hybrid contribution 0.757 1.494 0.735 1.829 sum 6.556 -10.867 8.056 15.033 Atomic orbital electron populations 1.69942 1.04962 1.25047 1.56553 1.24876 0.95643 0.97690 1.02003 0.86189 0.78661 0.83748 0.77590 1.21592 1.21708 1.20720 1.18949 0.90290 0.82402 1.43757 0.90887 1.44550 1.05572 1.01086 1.80845 1.21425 0.85085 0.90205 0.98599 1.23008 0.97382 0.99695 0.98742 1.22606 0.97114 0.97403 0.99346 1.20879 0.93981 0.86725 0.92612 0.94078 1.22823 1.00600 0.94739 1.00812 1.20998 0.87443 0.99818 0.83060 0.87666 1.86585 1.34014 1.54479 1.60850 1.20875 0.95405 0.97100 0.97990 1.20778 0.96015 0.98081 0.95252 1.21098 1.01284 1.01168 0.93292 1.17718 0.95625 1.00858 0.78952 1.91484 1.89774 1.95018 1.35995 1.21113 0.96302 1.01994 0.97629 1.20880 0.99534 0.97921 0.91850 0.93755 0.95987 0.91106 0.92572 0.92429 0.92245 0.92385 0.91395 0.91486 0.78064 0.85076 0.84810 0.84830 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.54 55.49 0.58 -26.14 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 3 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.10 9.71 -15.06 -0.15 -6.25 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.60 -14.79 3.13 -162.57 -0.51 -15.30 16 10 C 0.17 4.14 5.43 -2.53 -0.01 4.13 16 11 C -0.15 -2.82 7.08 -24.58 -0.17 -3.00 16 12 C -0.13 -2.18 5.55 -24.90 -0.14 -2.31 16 13 C 0.17 3.28 3.11 -66.96 -0.21 3.07 16 14 H 0.04 0.86 7.65 -51.93 -0.40 0.46 16 15 C -0.15 -2.58 4.38 -26.73 -0.12 -2.70 16 16 C 0.15 2.01 3.12 -27.88 -0.09 1.92 16 17 H 0.11 1.38 7.24 -51.93 -0.38 1.00 16 18 O -0.55 -7.71 12.59 -35.23 -0.44 -8.16 16 19 C -0.11 -1.43 4.97 -104.62 -0.52 -1.95 16 20 C -0.08 -0.98 9.32 -39.59 -0.37 -1.35 16 21 C -0.15 -1.73 10.03 -39.51 -0.40 -2.12 16 22 C 0.09 1.07 7.30 -39.42 -0.29 0.78 16 23 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 24 C -0.15 -1.71 10.03 -39.51 -0.40 -2.10 16 25 C -0.08 -0.96 9.67 -39.60 -0.38 -1.35 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.02 0.57 8.08 -51.93 -0.42 0.16 16 28 H 0.07 1.91 6.86 -51.92 -0.36 1.55 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.95 7.77 -51.93 -0.40 0.55 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.27 7.84 -51.93 -0.41 0.86 16 34 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 35 H 0.37 4.18 7.49 45.56 0.34 4.53 16 36 H 0.13 1.32 6.77 -52.49 -0.36 0.96 16 37 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.27 8.04 -52.48 -0.42 0.85 16 LS Contribution 322.01 15.07 4.85 4.85 Total: -1.00 -30.56 322.01 -8.70 -39.27 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.87 Total: 3.91 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.33 Total: -13.48 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.08 Total: -41.43 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.44 Total: -8.16 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.56 -8.70 -39.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134814026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.762 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds