Wall clock time and date at job start Wed Apr 15 2020 11:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99851 * 2 1 4 4 H 1.48498 * 109.47496 * 270.28262 * 3 2 1 5 5 H 1.48503 * 109.47094 * 30.28318 * 3 2 1 6 6 H 1.48499 * 109.47058 * 150.27668 * 3 2 1 7 7 C 1.38806 * 119.99721 * 180.28392 * 2 1 3 8 8 H 1.08009 * 119.99591 * 179.72150 * 7 2 1 9 9 N 1.36935 * 120.00653 * 359.71751 * 7 2 1 10 10 C 1.47430 * 125.64518 * 13.92606 * 9 7 2 11 11 C 1.54909 * 104.82970 * 155.83252 * 10 9 7 12 12 C 1.55160 * 101.58158 * 37.01363 * 11 10 9 13 13 C 1.47023 * 125.65282 * 193.61902 * 9 7 2 14 14 H 1.08999 * 109.87813 * 300.51206 * 13 9 7 15 15 C 1.53003 * 109.87810 * 61.67679 * 13 9 7 16 16 C 1.53006 * 109.46683 * 185.36058 * 15 13 9 17 17 H 1.09002 * 109.47065 * 303.86760 * 16 15 13 18 18 O 1.42896 * 109.46880 * 63.86560 * 16 15 13 19 19 C 1.50693 * 109.47005 * 183.86763 * 16 15 13 20 20 C 1.38244 * 119.97244 * 279.73032 * 19 16 15 21 21 C 1.38201 * 120.02579 * 179.72690 * 20 19 16 22 22 C 1.38459 * 119.97279 * 0.56664 * 21 20 19 23 23 F 1.35107 * 120.02764 * 179.68437 * 22 21 20 24 24 C 1.38466 * 119.94937 * 359.70188 * 22 21 20 25 25 C 1.38197 * 119.96936 * 0.02562 * 24 22 21 26 26 H 0.96997 * 119.99750 * 359.71441 * 1 2 3 27 27 H 1.08993 * 110.36899 * 274.67313 * 10 9 7 28 28 H 1.09008 * 110.36257 * 36.89060 * 10 9 7 29 29 H 1.09003 * 111.00208 * 155.08532 * 11 10 9 30 30 H 1.08993 * 111.00733 * 278.93336 * 11 10 9 31 31 H 1.08999 * 110.71950 * 82.85599 * 12 11 10 32 32 H 1.09003 * 110.71708 * 205.95558 * 12 11 10 33 33 H 1.08996 * 109.47594 * 305.36165 * 15 13 9 34 34 H 1.08999 * 109.46968 * 65.36543 * 15 13 9 35 35 H 0.96708 * 113.99901 * 60.00165 * 18 16 15 36 36 H 1.08000 * 119.99253 * 359.97296 * 20 19 16 37 37 H 1.08003 * 120.01590 * 180.28930 * 21 20 19 38 38 H 1.07993 * 120.01279 * 180.02562 * 24 22 21 39 39 H 1.08008 * 119.98468 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0500 -1.4000 5 1 1.4506 2.6509 0.7060 6 1 3.5507 1.4385 0.6942 7 6 2.0103 -1.2021 -0.0060 8 1 3.0903 -1.2021 -0.0105 9 7 1.3257 -2.3881 -0.0060 10 6 -0.1122 -2.5501 -0.2886 11 6 -0.2586 -4.0143 -0.7726 12 6 0.7671 -4.7458 0.1331 13 6 1.9040 -3.7114 0.2696 14 1 2.6933 -3.9281 -0.4503 15 6 2.4682 -3.7468 1.6913 16 6 3.1848 -5.0788 1.9225 17 1 2.4968 -5.9006 1.7243 18 8 4.3072 -5.1747 1.0434 19 6 3.6579 -5.1532 3.3513 20 6 4.8207 -4.5074 3.7283 21 6 5.2527 -4.5702 5.0396 22 6 4.5266 -5.2900 5.9733 23 9 4.9513 -5.3574 7.2541 24 6 3.3651 -5.9410 5.5934 25 6 2.9322 -5.8720 4.2828 26 1 -0.4849 0.8400 0.0042 27 1 -0.6972 -2.3896 0.6169 28 1 -0.4256 -1.8574 -1.0698 29 1 -1.2687 -4.3846 -0.5971 30 1 0.0126 -4.1072 -1.8242 31 1 0.3296 -4.9739 1.1051 32 1 1.1278 -5.6546 -0.3487 33 1 3.1742 -2.9268 1.8226 34 1 1.6537 -3.6432 2.4081 35 1 4.9623 -4.4735 1.1639 36 1 5.3897 -3.9503 2.9987 37 1 6.1586 -4.0618 5.3349 38 1 2.7977 -6.5023 6.3209 39 1 2.0259 -6.3794 3.9862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134814026.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:45 Heat of formation + Delta-G solvation = -74.215285 kcal Electronic energy + Delta-G solvation = -21743.987421 eV Core-core repulsion = 18372.379080 eV Total energy + Delta-G solvation = -3371.608341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.91223 -40.71040 -39.26879 -37.52852 -34.54891 -32.96526 -32.06566 -31.42788 -30.85882 -27.39422 -26.42852 -24.47808 -23.92881 -22.22408 -21.81667 -20.85622 -18.93589 -18.63249 -17.75811 -17.49963 -17.09327 -16.60948 -16.28353 -15.90449 -15.66595 -15.64656 -15.09075 -14.48925 -14.35801 -14.02283 -13.92053 -13.75896 -13.66217 -13.27522 -13.13006 -12.87760 -12.73193 -12.55343 -12.05361 -12.00944 -11.88847 -11.81275 -11.56779 -11.33879 -11.24536 -10.95044 -10.62651 -10.07521 -9.56531 -8.74536 -7.83171 -5.18639 0.10868 0.26661 1.45624 1.46613 1.54880 2.50289 2.56761 3.26428 3.34669 3.56377 3.60418 3.75186 3.80531 3.95723 4.05322 4.20461 4.27106 4.30743 4.35760 4.47428 4.53050 4.70241 4.83110 4.89228 4.95713 5.01250 5.07804 5.13266 5.15758 5.24170 5.26012 5.38405 5.52032 5.58988 5.68679 5.70398 5.81200 5.90270 6.29068 6.78577 7.14461 7.84333 8.51980 9.28262 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017012 B = 0.004792 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.510815 B = 5842.125761 C = 6749.010104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.618 5.618 10 C 0.174 3.826 11 C -0.137 4.137 12 C -0.116 4.116 13 C 0.157 3.843 14 H 0.035 0.965 15 C -0.135 4.135 16 C 0.163 3.837 17 H 0.119 0.881 18 O -0.562 6.562 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.156 4.156 22 C 0.073 3.927 23 F -0.149 7.149 24 C -0.153 4.153 25 C -0.086 4.086 26 H 0.245 0.755 27 H -0.007 1.007 28 H 0.031 0.969 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.382 0.618 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.071 -13.883 7.981 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.798 3.202 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.342 5.342 10 C 0.049 3.951 11 C -0.176 4.176 12 C -0.154 4.154 13 C 0.051 3.949 14 H 0.053 0.947 15 C -0.175 4.175 16 C 0.103 3.897 17 H 0.137 0.863 18 O -0.369 6.369 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.174 4.174 22 C 0.054 3.946 23 F -0.128 7.128 24 C -0.172 4.172 25 C -0.104 4.104 26 H 0.054 0.946 27 H 0.011 0.989 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.231 0.769 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.734 -14.188 7.812 17.541 hybrid contribution 0.521 2.016 0.585 2.163 sum 7.254 -12.172 8.397 16.471 Atomic orbital electron populations 1.70157 1.06341 1.25066 1.58374 1.25639 0.96439 1.00854 1.02837 0.85207 0.77842 0.79721 0.77399 1.21465 1.22414 1.19260 1.19304 0.90752 0.83656 1.42147 0.90471 1.44845 1.05905 1.02284 1.81180 1.21221 0.84718 0.93016 0.96159 1.22882 0.99626 0.95911 0.99136 1.22609 0.95305 0.97344 1.00105 1.21088 0.94839 0.85161 0.93798 0.94697 1.22582 0.99895 0.96510 0.98545 1.20773 0.87331 0.97718 0.83861 0.86335 1.86559 1.34240 1.55054 1.61091 1.20851 0.96166 0.98279 0.97507 1.20998 0.96113 0.98062 0.95734 1.21308 1.01865 1.01116 0.93139 1.17989 0.96278 1.01413 0.78911 1.91471 1.89888 1.95096 1.36319 1.21371 0.96052 1.01716 0.98064 1.21152 1.00013 0.97549 0.91656 0.94585 0.98922 0.95066 0.89976 0.92089 0.90640 0.89250 0.93419 0.92776 0.76866 0.83825 0.83311 0.82808 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.35 10.54 21.65 0.23 -57.12 16 2 C -0.06 -3.67 5.47 84.86 0.46 -3.20 16 3 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.23 -12.59 9.71 84.03 0.82 -11.77 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.62 -30.93 3.13 -668.26 -2.09 -33.02 16 10 C 0.17 8.57 5.43 86.85 0.47 9.05 16 11 C -0.14 -4.94 7.08 31.99 0.23 -4.72 16 12 C -0.12 -3.64 5.55 31.78 0.18 -3.46 16 13 C 0.16 6.04 3.11 45.34 0.14 6.18 16 14 H 0.04 1.40 7.65 -2.39 -0.02 1.38 16 15 C -0.14 -4.52 4.38 30.60 0.13 -4.38 16 16 C 0.16 4.07 3.12 29.85 0.09 4.16 16 17 H 0.12 2.67 7.24 -2.39 -0.02 2.65 16 18 O -0.56 -14.36 12.59 -148.98 -1.88 -16.23 16 19 C -0.13 -2.94 4.97 -19.86 -0.10 -3.03 16 20 C -0.09 -2.00 9.32 22.26 0.21 -1.79 16 21 C -0.16 -3.34 10.03 22.31 0.22 -3.12 16 22 C 0.07 1.66 7.30 22.38 0.16 1.82 16 23 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 24 C -0.15 -3.10 10.03 22.31 0.22 -2.87 16 25 C -0.09 -1.75 9.67 22.26 0.22 -1.53 16 26 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 27 H -0.01 -0.39 8.08 -2.39 -0.02 -0.41 16 28 H 0.03 1.75 6.86 -2.38 -0.02 1.73 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.07 2.15 7.77 -2.39 -0.02 2.13 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 1.76 7.84 -2.39 -0.02 1.74 16 34 H 0.05 1.94 8.01 -2.39 -0.02 1.92 16 35 H 0.38 7.90 7.49 -74.05 -0.55 7.34 16 36 H 0.14 2.65 6.77 -2.91 -0.02 2.63 16 37 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 39 H 0.16 2.41 8.04 -2.91 -0.02 2.39 16 Total: -1.00 -67.34 322.01 3.02 -64.32 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.50 Total: 15.82 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 3.46 Total: -18.68 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -1.86 Total: -90.14 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.88 Total: -16.23 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -67.34 3.02 -64.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134814026.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.899 kcal (2) G-P(sol) polarization free energy of solvation -67.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds