Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48505 * 109.46990 * 239.99735 * 3 2 1 5 5 H 1.48501 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47327 * 119.99746 * 3 2 1 7 7 C 1.38814 * 119.99356 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99236 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64923 * 14.46006 * 9 7 2 11 11 C 1.54902 * 104.83799 * 155.83007 * 10 9 7 12 12 C 1.55404 * 101.66368 * 36.92156 * 11 10 9 13 13 C 1.47025 * 125.64944 * 194.40770 * 9 7 2 14 14 H 1.08993 * 109.88302 * 300.67028 * 13 9 7 15 15 C 1.53002 * 109.87695 * 61.68567 * 13 9 7 16 16 C 1.53008 * 109.46572 * 186.09594 * 15 13 9 17 17 H 1.08998 * 109.46897 * 54.18734 * 16 15 13 18 18 O 1.42894 * 109.47224 * 294.18859 * 16 15 13 19 19 C 1.50700 * 109.46901 * 174.18776 * 16 15 13 20 20 C 1.38241 * 119.97428 * 265.00191 * 19 16 15 21 21 C 1.38200 * 120.02464 * 179.97438 * 20 19 16 22 22 C 1.38459 * 119.97414 * 359.97438 * 21 20 19 23 23 F 1.35096 * 120.02523 * 179.97438 * 22 21 20 24 24 C 1.38459 * 119.95087 * 0.02562 * 22 21 20 25 25 C 1.38203 * 119.97294 * 0.02562 * 24 22 21 26 26 H 0.97004 * 119.99337 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.36357 * 274.67250 * 10 9 7 28 28 H 1.09004 * 110.36953 * 36.87966 * 10 9 7 29 29 H 1.09000 * 111.01100 * 155.08031 * 11 10 9 30 30 H 1.08998 * 111.00530 * 278.89929 * 11 10 9 31 31 H 1.09003 * 110.85240 * 206.29812 * 12 11 10 32 32 H 1.09003 * 110.69118 * 82.95379 * 12 11 10 33 33 H 1.09002 * 109.47316 * 66.10005 * 15 13 9 34 34 H 1.09000 * 109.46993 * 306.09559 * 15 13 9 35 35 H 0.96707 * 114.00425 * 300.00493 * 18 16 15 36 36 H 1.07997 * 119.98933 * 359.70477 * 20 19 16 37 37 H 1.08003 * 120.01305 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.01203 * 180.02562 * 24 22 21 39 39 H 1.07996 * 119.98600 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1087 -2.5522 -0.2991 11 6 -0.2493 -4.0198 -0.7742 12 6 0.7675 -4.7475 0.1486 13 6 1.8989 -3.7087 0.2983 14 1 2.7018 -3.9312 -0.4044 15 6 2.4393 -3.7304 1.7296 16 6 3.1676 -5.0526 1.9796 17 1 3.9289 -5.1986 1.2133 18 8 2.2298 -6.1297 1.9306 19 6 3.8214 -5.0171 3.3369 20 6 5.1474 -4.6446 3.4553 21 6 5.7478 -4.6111 4.6996 22 6 5.0207 -4.9504 5.8279 23 9 5.6067 -4.9186 7.0447 24 6 3.6926 -5.3234 5.7082 25 6 3.0946 -5.3571 4.4627 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7051 -2.3849 0.5977 28 1 -0.4122 -1.8652 -1.0892 29 1 -1.2615 -4.3889 -0.6088 30 1 0.0347 -4.1203 -1.8217 31 1 1.1389 -5.6568 -0.3241 32 1 0.3182 -4.9706 1.1164 33 1 1.6115 -3.6332 2.4320 34 1 3.1332 -2.9014 1.8686 35 1 1.5221 -6.0653 2.5865 36 1 5.7155 -4.3838 2.5746 37 1 6.7839 -4.3204 4.7918 38 1 3.1244 -5.5879 6.5876 39 1 2.0589 -5.6484 4.3690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134814049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = -54.392811 kcal Electronic energy + Delta-G solvation = -21787.056970 eV Core-core repulsion = 18416.308195 eV Total energy + Delta-G solvation = -3370.748774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.96918 -39.70610 -37.83122 -36.23984 -32.52847 -31.87412 -31.15072 -29.99725 -29.06763 -26.11984 -24.45727 -23.22740 -22.90470 -21.05119 -20.12981 -19.38031 -17.94635 -16.97314 -16.65518 -16.39624 -15.67008 -15.40943 -14.84665 -14.60119 -14.35226 -14.05069 -13.73288 -13.62664 -13.18465 -12.83839 -12.74368 -12.21517 -11.99306 -11.80716 -11.45234 -11.40398 -11.14845 -10.94702 -10.84071 -10.66424 -10.18876 -9.98473 -9.91894 -9.68459 -9.65595 -9.48513 -9.20371 -8.59875 -8.53727 -6.75163 -5.73377 -3.08163 1.04590 1.13726 3.39099 3.43931 3.44747 3.47851 4.16413 4.48376 4.57864 4.61862 4.64649 4.77662 5.14350 5.19719 5.38323 5.43377 5.50629 5.66065 5.75364 5.83019 5.85260 5.91973 5.99283 6.01139 6.12630 6.22298 6.37210 6.42115 6.51728 6.60456 6.70025 6.78679 6.82984 6.89789 7.19586 7.57629 7.65276 7.74339 7.82589 8.31619 9.22048 9.83841 10.53770 11.38751 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.004969 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.807967 B = 5633.093724 C = 6858.039791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.228 4.228 8 H 0.073 0.927 9 N -0.596 5.596 10 C 0.173 3.827 11 C -0.154 4.154 12 C -0.110 4.110 13 C 0.166 3.834 14 H 0.030 0.970 15 C -0.150 4.150 16 C 0.147 3.853 17 H 0.106 0.894 18 O -0.551 6.551 19 C -0.112 4.112 20 C -0.083 4.083 21 C -0.151 4.151 22 C 0.087 3.913 23 F -0.144 7.144 24 C -0.150 4.150 25 C -0.085 4.085 26 H 0.253 0.747 27 H 0.022 0.978 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.369 0.631 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -12.044 7.631 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.090 0.910 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.193 4.193 12 C -0.148 4.148 13 C 0.058 3.942 14 H 0.048 0.952 15 C -0.190 4.190 16 C 0.088 3.912 17 H 0.123 0.877 18 O -0.357 6.357 19 C -0.113 4.113 20 C -0.101 4.101 21 C -0.169 4.169 22 C 0.068 3.932 23 F -0.123 7.123 24 C -0.169 4.169 25 C -0.103 4.103 26 H 0.063 0.937 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.217 0.783 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.369 -11.976 7.168 15.341 hybrid contribution 0.289 1.292 0.931 1.619 sum 6.659 -10.683 8.099 14.969 Atomic orbital electron populations 1.69936 1.04971 1.25184 1.56320 1.24884 0.95633 0.97695 1.01897 0.86276 0.78598 0.83426 0.77929 1.21130 1.21602 1.21162 1.18910 0.90256 0.82437 1.44054 0.90954 1.44562 1.06154 1.01286 1.79976 1.21396 0.85079 0.90227 0.98501 1.23105 0.97700 0.99704 0.98794 1.22551 0.96278 0.96945 0.98997 1.20877 0.94361 0.87015 0.91945 0.95213 1.22827 1.00242 0.95177 1.00720 1.20967 0.90718 0.87927 0.91622 0.87654 1.86627 1.40952 1.47431 1.60673 1.20866 0.94539 0.98674 0.97176 1.20887 0.94279 0.97863 0.97083 1.21124 1.00892 1.03167 0.91761 1.17712 0.92119 1.03161 0.80218 1.91480 1.84364 1.94351 1.42094 1.21082 0.93546 1.03208 0.99072 1.20738 0.99945 0.98521 0.91077 0.93698 0.96008 0.91342 0.92677 0.92641 0.91996 0.92368 0.92025 0.90824 0.78319 0.84770 0.84823 0.84868 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 10.57 55.49 0.59 -26.15 16 2 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.20 9.69 -15.06 -0.15 -6.35 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.60 -14.80 3.13 -162.58 -0.51 -15.31 16 10 C 0.17 4.17 5.42 -2.53 -0.01 4.16 16 11 C -0.15 -2.94 7.09 -24.45 -0.17 -3.11 16 12 C -0.11 -1.90 4.88 -24.76 -0.12 -2.02 16 13 C 0.17 3.28 3.15 -66.95 -0.21 3.07 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.15 -2.57 4.52 -26.73 -0.12 -2.69 16 16 C 0.15 1.98 3.20 -27.88 -0.09 1.89 16 17 H 0.11 1.40 8.05 -51.93 -0.42 0.98 16 18 O -0.55 -7.07 10.76 -35.23 -0.38 -7.45 16 19 C -0.11 -1.40 5.00 -104.62 -0.52 -1.93 16 20 C -0.08 -0.98 9.68 -39.59 -0.38 -1.37 16 21 C -0.15 -1.74 10.03 -39.51 -0.40 -2.14 16 22 C 0.09 1.07 7.30 -39.42 -0.29 0.78 16 23 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 24 C -0.15 -1.71 10.03 -39.51 -0.40 -2.10 16 25 C -0.08 -0.97 9.33 -39.59 -0.37 -1.34 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.57 8.06 -51.93 -0.42 0.15 16 28 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 32 H 0.06 0.93 6.82 -51.93 -0.35 0.58 16 33 H 0.06 1.10 8.00 -51.93 -0.42 0.69 16 34 H 0.07 1.41 7.82 -51.93 -0.41 1.00 16 35 H 0.37 3.75 6.99 45.56 0.32 4.07 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 1.21 6.61 -52.49 -0.35 0.86 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -30.42 319.34 -8.70 -39.11 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.90 Total: 3.23 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -3.33 Total: -13.35 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.08 Total: -41.46 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.38 Total: -7.45 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.42 -8.70 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134814049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.280 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds