Wall clock time and date at job start Wed Apr 15 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48505 * 109.46990 * 239.99735 * 3 2 1 5 5 H 1.48501 * 109.47272 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47327 * 119.99746 * 3 2 1 7 7 C 1.38814 * 119.99356 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99236 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64923 * 14.46006 * 9 7 2 11 11 C 1.54902 * 104.83799 * 155.83007 * 10 9 7 12 12 C 1.55404 * 101.66368 * 36.92156 * 11 10 9 13 13 C 1.47025 * 125.64944 * 194.40770 * 9 7 2 14 14 H 1.08993 * 109.88302 * 300.67028 * 13 9 7 15 15 C 1.53002 * 109.87695 * 61.68567 * 13 9 7 16 16 C 1.53008 * 109.46572 * 186.09594 * 15 13 9 17 17 H 1.08998 * 109.46897 * 54.18734 * 16 15 13 18 18 O 1.42894 * 109.47224 * 294.18859 * 16 15 13 19 19 C 1.50700 * 109.46901 * 174.18776 * 16 15 13 20 20 C 1.38241 * 119.97428 * 265.00191 * 19 16 15 21 21 C 1.38200 * 120.02464 * 179.97438 * 20 19 16 22 22 C 1.38459 * 119.97414 * 359.97438 * 21 20 19 23 23 F 1.35096 * 120.02523 * 179.97438 * 22 21 20 24 24 C 1.38459 * 119.95087 * 0.02562 * 22 21 20 25 25 C 1.38203 * 119.97294 * 0.02562 * 24 22 21 26 26 H 0.97004 * 119.99337 * 0.02562 * 1 2 3 27 27 H 1.08997 * 110.36357 * 274.67250 * 10 9 7 28 28 H 1.09004 * 110.36953 * 36.87966 * 10 9 7 29 29 H 1.09000 * 111.01100 * 155.08031 * 11 10 9 30 30 H 1.08998 * 111.00530 * 278.89929 * 11 10 9 31 31 H 1.09003 * 110.85240 * 206.29812 * 12 11 10 32 32 H 1.09003 * 110.69118 * 82.95379 * 12 11 10 33 33 H 1.09002 * 109.47316 * 66.10005 * 15 13 9 34 34 H 1.09000 * 109.46993 * 306.09559 * 15 13 9 35 35 H 0.96707 * 114.00425 * 300.00493 * 18 16 15 36 36 H 1.07997 * 119.98933 * 359.70477 * 20 19 16 37 37 H 1.08003 * 120.01305 * 179.97438 * 21 20 19 38 38 H 1.07996 * 120.01203 * 180.02562 * 24 22 21 39 39 H 1.07996 * 119.98600 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1087 -2.5522 -0.2991 11 6 -0.2493 -4.0198 -0.7742 12 6 0.7675 -4.7475 0.1486 13 6 1.8989 -3.7087 0.2983 14 1 2.7018 -3.9312 -0.4044 15 6 2.4393 -3.7304 1.7296 16 6 3.1676 -5.0526 1.9796 17 1 3.9289 -5.1986 1.2133 18 8 2.2298 -6.1297 1.9306 19 6 3.8214 -5.0171 3.3369 20 6 5.1474 -4.6446 3.4553 21 6 5.7478 -4.6111 4.6996 22 6 5.0207 -4.9504 5.8279 23 9 5.6067 -4.9186 7.0447 24 6 3.6926 -5.3234 5.7082 25 6 3.0946 -5.3571 4.4627 26 1 -0.4849 0.8401 -0.0004 27 1 -0.7051 -2.3849 0.5977 28 1 -0.4122 -1.8652 -1.0892 29 1 -1.2615 -4.3889 -0.6088 30 1 0.0347 -4.1203 -1.8217 31 1 1.1389 -5.6568 -0.3241 32 1 0.3182 -4.9706 1.1164 33 1 1.6115 -3.6332 2.4320 34 1 3.1332 -2.9014 1.8686 35 1 1.5221 -6.0653 2.5865 36 1 5.7155 -4.3838 2.5746 37 1 6.7839 -4.3204 4.7918 38 1 3.1244 -5.5879 6.5876 39 1 2.0589 -5.6484 4.3690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134814049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:50 Heat of formation + Delta-G solvation = -72.118583 kcal Electronic energy + Delta-G solvation = -21787.825617 eV Core-core repulsion = 18416.308195 eV Total energy + Delta-G solvation = -3371.517422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.91329 -40.72705 -39.26776 -37.46286 -34.47451 -33.02801 -32.04400 -31.36762 -30.83960 -27.50334 -26.36697 -24.33758 -23.95101 -22.07945 -21.85441 -21.00396 -18.93273 -18.65504 -17.75047 -17.48311 -17.02374 -16.60963 -16.25852 -15.83799 -15.80566 -15.51319 -15.08098 -14.47156 -14.40267 -14.02662 -13.80580 -13.75784 -13.63910 -13.19624 -13.11383 -12.87187 -12.73292 -12.62010 -12.08628 -12.05182 -11.84492 -11.77458 -11.53207 -11.31980 -11.23449 -10.80846 -10.62990 -10.07245 -9.55208 -8.74931 -7.83855 -5.19425 0.11565 0.26959 1.45158 1.47295 1.53471 2.50158 2.57210 3.26800 3.33989 3.57068 3.61152 3.76026 3.81585 3.96359 4.09107 4.18678 4.30063 4.32499 4.42184 4.48069 4.52874 4.76779 4.79262 4.92576 4.97482 5.01430 5.11283 5.14029 5.20699 5.26783 5.35249 5.39234 5.51818 5.56974 5.70234 5.70923 5.81922 5.90614 6.28989 6.84822 7.14211 7.84032 8.51902 9.27455 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.004969 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.807967 B = 5633.093724 C = 6858.039791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.063 4.063 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.076 0.924 9 N -0.617 5.617 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.095 4.095 13 C 0.155 3.845 14 H 0.027 0.973 15 C -0.135 4.135 16 C 0.166 3.834 17 H 0.109 0.891 18 O -0.553 6.553 19 C -0.126 4.126 20 C -0.091 4.091 21 C -0.155 4.155 22 C 0.072 3.928 23 F -0.149 7.149 24 C -0.154 4.154 25 C -0.088 4.088 26 H 0.245 0.755 27 H -0.006 1.006 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.382 0.618 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 -13.735 8.184 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.798 3.202 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.342 5.342 10 C 0.051 3.949 11 C -0.181 4.181 12 C -0.133 4.133 13 C 0.049 3.951 14 H 0.045 0.955 15 C -0.175 4.175 16 C 0.106 3.894 17 H 0.127 0.873 18 O -0.360 6.360 19 C -0.126 4.126 20 C -0.109 4.109 21 C -0.174 4.174 22 C 0.053 3.947 23 F -0.128 7.128 24 C -0.172 4.172 25 C -0.105 4.105 26 H 0.055 0.945 27 H 0.012 0.988 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.232 0.768 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.187 -13.708 7.733 17.302 hybrid contribution 0.064 1.767 0.769 1.928 sum 7.251 -11.941 8.502 16.353 Atomic orbital electron populations 1.70148 1.06311 1.25186 1.58105 1.25640 0.96434 1.00834 1.02692 0.85293 0.77306 0.79433 0.78191 1.20348 1.22209 1.20443 1.19258 0.90692 0.83728 1.42546 0.90632 1.44847 1.06463 1.02443 1.80411 1.21186 0.84705 0.92927 0.96068 1.22989 0.99884 0.96007 0.99193 1.22520 0.94565 0.96569 0.99630 1.21130 0.95229 0.85390 0.93305 0.95472 1.22581 0.99629 0.96776 0.98522 1.20628 0.90424 0.85841 0.92475 0.87307 1.86605 1.41371 1.46645 1.61408 1.20850 0.95030 0.99829 0.96913 1.21108 0.94392 0.97616 0.97751 1.21337 1.01778 1.02829 0.91466 1.17985 0.92769 1.03691 0.80252 1.91466 1.84503 1.94444 1.42392 1.21338 0.93390 1.02651 0.99853 1.21017 1.00940 0.97889 0.90702 0.94530 0.98844 0.95315 0.90145 0.92361 0.89619 0.90686 0.92886 0.93289 0.76781 0.83541 0.83213 0.82991 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.23 10.57 21.65 0.23 -57.00 16 2 C -0.06 -3.56 5.47 84.86 0.46 -3.10 16 3 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.23 -12.86 9.69 84.04 0.81 -12.04 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -30.97 3.13 -668.27 -2.09 -33.05 16 10 C 0.18 8.69 5.42 86.85 0.47 9.16 16 11 C -0.14 -5.18 7.09 32.07 0.23 -4.95 16 12 C -0.10 -3.02 4.88 31.87 0.16 -2.86 16 13 C 0.16 5.98 3.15 45.34 0.14 6.12 16 14 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 15 C -0.14 -4.49 4.52 30.60 0.14 -4.35 16 16 C 0.17 4.09 3.20 29.85 0.10 4.19 16 17 H 0.11 2.63 8.05 -2.39 -0.02 2.61 16 18 O -0.55 -12.27 10.76 -148.98 -1.60 -13.88 16 19 C -0.13 -2.88 5.00 -19.86 -0.10 -2.98 16 20 C -0.09 -1.99 9.68 22.26 0.22 -1.78 16 21 C -0.16 -3.33 10.03 22.31 0.22 -3.11 16 22 C 0.07 1.65 7.30 22.38 0.16 1.81 16 23 F -0.15 -3.58 17.27 44.97 0.78 -2.80 16 24 C -0.15 -3.16 10.03 22.31 0.22 -2.94 16 25 C -0.09 -1.79 9.33 22.26 0.21 -1.58 16 26 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 27 H -0.01 -0.35 8.06 -2.39 -0.02 -0.37 16 28 H 0.03 1.61 6.91 -2.38 -0.02 1.59 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 2.38 7.98 -2.39 -0.02 2.37 16 32 H 0.07 2.14 6.82 -2.39 -0.02 2.13 16 33 H 0.05 1.83 8.00 -2.39 -0.02 1.81 16 34 H 0.05 1.86 7.82 -2.39 -0.02 1.84 16 35 H 0.38 6.32 6.99 -74.05 -0.52 5.80 16 36 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 2.33 6.61 -2.91 -0.02 2.31 16 Total: -1.00 -66.85 319.34 3.32 -63.53 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.53 Total: 13.81 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 3.44 Total: -18.42 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -1.86 Total: -90.05 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.60 Total: -13.88 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -66.85 3.32 -63.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134814049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.588 kcal (2) G-P(sol) polarization free energy of solvation -66.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds