Wall clock time and date at job start Wed Apr 15 2020 11:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99871 * 2 1 4 4 H 1.48497 * 109.46947 * 239.99908 * 3 2 1 5 5 H 1.48495 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46771 * 120.00210 * 3 2 1 7 7 C 1.38811 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99711 * 155.50362 * 7 2 1 9 9 N 1.36935 * 119.99983 * 335.22610 * 7 2 1 10 10 C 1.47231 * 121.33675 * 163.16211 * 9 7 2 11 11 C 1.52790 * 107.90233 * 115.76511 * 10 9 7 12 12 C 1.50596 * 110.86006 * 47.49225 * 11 10 9 13 13 C 1.38972 * 117.62865 * 159.93780 * 12 11 10 14 14 C 1.37903 * 120.58541 * 179.54096 * 13 12 11 15 15 C 1.38272 * 119.82882 * 359.92540 * 14 13 12 16 16 C 1.37958 * 119.71140 * 0.22984 * 15 14 13 17 17 C 1.37673 * 122.85476 * 339.83039 * 12 11 10 18 18 C 1.46685 * 121.33500 * 342.87657 * 9 7 2 19 19 H 1.08995 * 109.44012 * 344.45657 * 18 9 7 20 20 C 1.50701 * 109.43553 * 104.33391 * 18 9 7 21 21 C 1.38234 * 119.99372 * 242.61897 * 20 18 9 22 22 C 1.38242 * 119.99507 * 179.78479 * 21 20 18 23 23 C 1.38236 * 120.00052 * 0.46956 * 22 21 20 24 24 C 1.38237 * 120.00018 * 359.75996 * 23 22 21 25 25 C 1.38232 * 120.00069 * 62.89334 * 20 18 9 26 26 H 0.96998 * 120.00487 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.77425 * 235.36530 * 10 9 7 28 28 H 1.08996 * 109.77199 * 356.16223 * 10 9 7 29 29 H 1.09001 * 109.19647 * 167.84684 * 11 10 9 30 30 H 1.08998 * 109.20209 * 287.13487 * 11 10 9 31 31 H 1.08001 * 119.70703 * 359.51732 * 13 12 11 32 32 H 1.08000 * 120.09222 * 179.90455 * 14 13 12 33 33 H 1.08000 * 120.14360 * 180.21265 * 15 14 13 34 34 H 1.07998 * 119.74547 * 180.02562 * 16 15 14 35 35 H 1.07991 * 120.00838 * 359.97438 * 21 20 18 36 36 H 1.07999 * 120.00249 * 180.24763 * 22 21 20 37 37 H 1.07996 * 120.00156 * 179.78640 * 23 22 21 38 38 H 1.07994 * 120.00064 * 180.02562 * 24 23 22 39 39 H 1.07994 * 120.00064 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0173 -1.2440 -0.3884 9 7 1.4200 -2.3337 0.4959 10 6 1.9522 -3.6720 0.1902 11 6 2.4321 -4.2968 1.4993 12 6 1.3943 -4.1422 2.5795 13 6 1.4702 -4.9961 3.6733 14 6 0.5568 -4.9016 4.7021 15 6 -0.4437 -3.9487 4.6482 16 6 -0.5235 -3.1017 3.5621 17 6 0.3922 -3.1997 2.5231 18 6 0.2359 -2.2607 1.3586 19 1 0.1186 -1.2421 1.7282 20 6 -0.9859 -2.6500 0.5670 21 6 -2.0018 -1.7337 0.3689 22 6 -3.1207 -2.0893 -0.3610 23 6 -3.2279 -3.3642 -0.8845 24 6 -2.2141 -4.2820 -0.6824 25 6 -1.0933 -3.9250 0.0438 26 1 -0.4851 0.8400 0.0004 27 1 1.1679 -4.2896 -0.2474 28 1 2.7869 -3.5868 -0.5055 29 1 2.6282 -5.3571 1.3397 30 1 3.3531 -3.8063 1.8143 31 1 2.2514 -5.7406 3.7178 32 1 0.6223 -5.5704 5.5476 33 1 -1.1597 -3.8679 5.4527 34 1 -1.3044 -2.3569 3.5196 35 1 -1.9202 -0.7392 0.7817 36 1 -3.9127 -1.3723 -0.5192 37 1 -4.1036 -3.6431 -1.4518 38 1 -2.2977 -5.2778 -1.0918 39 1 -0.3014 -4.6420 0.2020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339606849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:06 Heat of formation + Delta-G solvation = 83.816458 kcal Electronic energy + Delta-G solvation = -22039.604684 eV Core-core repulsion = 19105.618337 eV Total energy + Delta-G solvation = -2933.986346 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.69999 -37.90109 -35.83889 -32.95745 -31.97155 -30.30755 -29.79451 -29.56169 -28.10458 -25.27500 -23.40909 -22.14964 -21.94899 -21.37560 -20.43508 -18.78233 -16.93480 -16.11026 -15.78846 -14.93390 -14.67596 -14.33019 -14.23233 -14.17249 -13.58620 -13.34021 -12.84908 -12.60571 -12.47658 -12.44668 -11.83772 -11.70768 -11.56538 -11.29010 -11.09812 -10.90348 -10.73919 -10.44168 -10.39851 -10.21631 -9.94390 -9.76291 -9.67298 -8.63993 -8.21144 -7.96107 -7.88161 -7.66750 -6.92901 -5.83672 -3.18333 1.89969 1.94202 2.34948 2.44119 3.36410 3.43113 3.45641 4.30374 4.43094 4.79258 5.21931 5.32832 5.35369 5.42818 5.49502 5.59993 5.71311 5.77791 5.85764 5.93956 5.96815 6.12156 6.15771 6.18914 6.31451 6.47593 6.55440 6.57524 6.63300 6.69086 6.87061 6.90207 6.97336 7.00970 7.07995 7.16678 7.38429 7.39262 7.49437 7.59804 7.71420 7.90949 8.04938 8.24776 9.09109 9.73177 10.27243 11.19996 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.009143 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.002982 B = 3061.772263 C = 4173.260067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.002 3.998 3 Si 0.898 3.102 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.579 5.579 10 C 0.130 3.870 11 C -0.099 4.099 12 C -0.064 4.064 13 C -0.130 4.130 14 C -0.136 4.136 15 C -0.131 4.131 16 C -0.115 4.115 17 C -0.066 4.066 18 C 0.259 3.741 19 H 0.113 0.887 20 C -0.038 4.038 21 C -0.050 4.050 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.123 4.123 26 H 0.254 0.746 27 H 0.039 0.961 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 -7.848 4.885 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.298 5.298 10 C 0.004 3.996 11 C -0.138 4.138 12 C -0.064 4.064 13 C -0.148 4.148 14 C -0.154 4.154 15 C -0.149 4.149 16 C -0.134 4.134 17 C -0.068 4.068 18 C 0.151 3.849 19 H 0.130 0.870 20 C -0.040 4.040 21 C -0.069 4.069 22 C -0.163 4.163 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.142 4.142 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.340 -7.660 4.836 9.356 hybrid contribution 0.411 0.851 -0.166 0.959 sum -1.929 -6.810 4.670 8.479 Atomic orbital electron populations 1.70178 1.04821 1.25264 1.53592 1.24801 0.95293 0.98091 1.01385 0.86420 0.79147 0.83578 0.78051 1.21085 1.21673 1.21224 1.19161 0.96279 0.85643 1.36688 0.90755 1.44149 1.30007 1.00895 1.54774 1.21164 0.97366 0.87739 0.93378 1.20982 0.97031 0.99737 0.96022 1.19564 0.96315 0.94909 0.95638 1.21115 0.99377 0.99851 0.94497 1.20857 0.96423 0.99425 0.98698 1.20929 0.98899 0.96761 0.98340 1.21099 0.98963 0.99448 0.93851 1.20496 0.93542 0.96137 0.96610 1.18209 0.84090 0.97128 0.85442 0.86974 1.20326 0.94710 0.91904 0.97103 1.21221 0.90932 0.98812 0.95932 1.21054 0.98743 0.95908 1.00636 1.20825 0.98672 0.94541 1.01862 1.20842 0.95237 0.98681 1.01418 1.21170 0.97015 0.96952 0.99035 0.93573 0.94313 0.92091 0.92119 0.91066 0.87099 0.87107 0.86924 0.86544 0.84998 0.87733 0.87989 0.87924 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.52 7.78 55.49 0.43 -23.09 16 2 C 0.00 0.05 4.83 -17.43 -0.08 -0.03 16 3 Si 0.90 20.99 29.62 -169.99 -5.03 15.96 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.52 9.70 -15.06 -0.15 -6.67 16 8 H 0.07 1.92 7.93 -52.49 -0.42 1.50 16 9 N -0.58 -13.80 2.62 -167.87 -0.44 -14.24 16 10 C 0.13 2.62 6.11 -3.75 -0.02 2.60 16 11 C -0.10 -1.74 5.87 -28.04 -0.16 -1.90 16 12 C -0.06 -1.19 5.76 -104.61 -0.60 -1.79 16 13 C -0.13 -2.08 9.59 -39.43 -0.38 -2.46 16 14 C -0.14 -2.04 10.04 -39.69 -0.40 -2.44 16 15 C -0.13 -2.05 10.05 -39.67 -0.40 -2.45 16 16 C -0.12 -2.09 9.40 -39.46 -0.37 -2.46 16 17 C -0.07 -1.33 4.67 -104.75 -0.49 -1.82 16 18 C 0.26 5.86 1.83 -70.27 -0.13 5.73 16 19 H 0.11 2.85 5.83 -51.93 -0.30 2.55 16 20 C -0.04 -0.84 4.46 -104.63 -0.47 -1.30 16 21 C -0.05 -1.08 8.16 -39.58 -0.32 -1.40 16 22 C -0.15 -2.80 10.05 -39.58 -0.40 -3.20 16 23 C -0.14 -2.56 10.05 -39.58 -0.40 -2.95 16 24 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 25 C -0.12 -2.53 8.28 -39.58 -0.33 -2.86 16 26 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 27 H 0.04 0.79 4.84 -51.93 -0.25 0.53 16 28 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 29 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.11 1.50 8.05 -52.49 -0.42 1.08 16 32 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 2.03 8.05 -52.49 -0.42 1.60 16 35 H 0.13 2.95 6.51 -52.49 -0.34 2.61 16 36 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.11 2.23 5.49 -52.49 -0.29 1.95 16 LS Contribution 309.73 15.07 4.67 4.67 Total: -1.00 -27.63 309.73 -10.82 -38.45 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.95 Total: 6.73 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -5.49 Total: -28.48 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.01 Total: -37.33 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.63 -10.82 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339606849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.268 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds