Wall clock time and date at job start Wed Apr 15 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99871 * 2 1 4 4 H 1.48497 * 109.46947 * 239.99908 * 3 2 1 5 5 H 1.48495 * 109.47267 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46771 * 120.00210 * 3 2 1 7 7 C 1.38811 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99711 * 155.50362 * 7 2 1 9 9 N 1.36935 * 119.99983 * 335.22610 * 7 2 1 10 10 C 1.47231 * 121.33675 * 163.16211 * 9 7 2 11 11 C 1.52790 * 107.90233 * 115.76511 * 10 9 7 12 12 C 1.50596 * 110.86006 * 47.49225 * 11 10 9 13 13 C 1.38972 * 117.62865 * 159.93780 * 12 11 10 14 14 C 1.37903 * 120.58541 * 179.54096 * 13 12 11 15 15 C 1.38272 * 119.82882 * 359.92540 * 14 13 12 16 16 C 1.37958 * 119.71140 * 0.22984 * 15 14 13 17 17 C 1.37673 * 122.85476 * 339.83039 * 12 11 10 18 18 C 1.46685 * 121.33500 * 342.87657 * 9 7 2 19 19 H 1.08995 * 109.44012 * 344.45657 * 18 9 7 20 20 C 1.50701 * 109.43553 * 104.33391 * 18 9 7 21 21 C 1.38234 * 119.99372 * 242.61897 * 20 18 9 22 22 C 1.38242 * 119.99507 * 179.78479 * 21 20 18 23 23 C 1.38236 * 120.00052 * 0.46956 * 22 21 20 24 24 C 1.38237 * 120.00018 * 359.75996 * 23 22 21 25 25 C 1.38232 * 120.00069 * 62.89334 * 20 18 9 26 26 H 0.96998 * 120.00487 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.77425 * 235.36530 * 10 9 7 28 28 H 1.08996 * 109.77199 * 356.16223 * 10 9 7 29 29 H 1.09001 * 109.19647 * 167.84684 * 11 10 9 30 30 H 1.08998 * 109.20209 * 287.13487 * 11 10 9 31 31 H 1.08001 * 119.70703 * 359.51732 * 13 12 11 32 32 H 1.08000 * 120.09222 * 179.90455 * 14 13 12 33 33 H 1.08000 * 120.14360 * 180.21265 * 15 14 13 34 34 H 1.07998 * 119.74547 * 180.02562 * 16 15 14 35 35 H 1.07991 * 120.00838 * 359.97438 * 21 20 18 36 36 H 1.07999 * 120.00249 * 180.24763 * 22 21 20 37 37 H 1.07996 * 120.00156 * 179.78640 * 23 22 21 38 38 H 1.07994 * 120.00064 * 180.02562 * 24 23 22 39 39 H 1.07994 * 120.00064 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0173 -1.2440 -0.3884 9 7 1.4200 -2.3337 0.4959 10 6 1.9522 -3.6720 0.1902 11 6 2.4321 -4.2968 1.4993 12 6 1.3943 -4.1422 2.5795 13 6 1.4702 -4.9961 3.6733 14 6 0.5568 -4.9016 4.7021 15 6 -0.4437 -3.9487 4.6482 16 6 -0.5235 -3.1017 3.5621 17 6 0.3922 -3.1997 2.5231 18 6 0.2359 -2.2607 1.3586 19 1 0.1186 -1.2421 1.7282 20 6 -0.9859 -2.6500 0.5670 21 6 -2.0018 -1.7337 0.3689 22 6 -3.1207 -2.0893 -0.3610 23 6 -3.2279 -3.3642 -0.8845 24 6 -2.2141 -4.2820 -0.6824 25 6 -1.0933 -3.9250 0.0438 26 1 -0.4851 0.8400 0.0004 27 1 1.1679 -4.2896 -0.2474 28 1 2.7869 -3.5868 -0.5055 29 1 2.6282 -5.3571 1.3397 30 1 3.3531 -3.8063 1.8143 31 1 2.2514 -5.7406 3.7178 32 1 0.6223 -5.5704 5.5476 33 1 -1.1597 -3.8679 5.4527 34 1 -1.3044 -2.3569 3.5196 35 1 -1.9202 -0.7392 0.7817 36 1 -3.9127 -1.3723 -0.5192 37 1 -4.1036 -3.6431 -1.4518 38 1 -2.2977 -5.2778 -1.0918 39 1 -0.3014 -4.6420 0.2020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339606849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:05 Heat of formation + Delta-G solvation = 72.506450 kcal Electronic energy + Delta-G solvation = -22040.095122 eV Core-core repulsion = 19105.618337 eV Total energy + Delta-G solvation = -2934.476785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.15979 -39.34831 -37.41973 -34.57171 -33.59713 -31.88910 -31.36958 -30.96590 -29.61739 -27.01040 -24.98765 -23.75044 -23.35540 -22.83942 -21.91753 -20.34468 -18.71433 -17.53470 -17.28655 -16.56753 -16.21958 -15.93709 -15.71175 -15.67965 -15.17780 -14.83481 -14.39796 -14.11222 -13.97409 -13.86241 -13.35785 -13.21613 -13.08727 -12.95590 -12.69165 -12.62393 -12.31309 -12.23198 -11.95449 -11.76608 -11.52283 -11.45234 -11.21884 -10.51956 -9.57727 -9.46560 -9.32416 -9.18013 -8.77451 -7.79139 -5.15803 0.59923 0.61907 0.80703 0.90526 1.45609 1.49514 1.54588 2.51926 2.99167 3.20603 3.27088 3.72598 4.01972 4.07458 4.20500 4.25267 4.32349 4.34663 4.48419 4.50627 4.54387 4.71195 4.73589 4.82755 4.92200 4.95438 5.07383 5.10951 5.17911 5.27728 5.29383 5.44803 5.49441 5.55447 5.66954 5.71155 5.75718 5.85682 5.92385 5.98558 6.27499 6.31155 6.34460 6.50651 7.15470 7.85213 8.37569 9.20259 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.009143 C = 0.006708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.002982 B = 3061.772263 C = 4173.260067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.041 4.041 3 Si 0.952 3.048 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.265 4.265 8 H 0.070 0.930 9 N -0.596 5.596 10 C 0.126 3.874 11 C -0.090 4.090 12 C -0.084 4.084 13 C -0.127 4.127 14 C -0.128 4.128 15 C -0.127 4.127 16 C -0.134 4.134 17 C -0.093 4.093 18 C 0.265 3.735 19 H 0.069 0.931 20 C -0.054 4.054 21 C -0.075 4.075 22 C -0.150 4.150 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.137 4.137 26 H 0.248 0.752 27 H 0.040 0.960 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.564 -10.348 5.699 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.238 4.238 3 Si 0.782 3.218 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.394 4.394 8 H 0.087 0.913 9 N -0.316 5.316 10 C 0.001 3.999 11 C -0.128 4.128 12 C -0.084 4.084 13 C -0.145 4.145 14 C -0.146 4.146 15 C -0.145 4.145 16 C -0.153 4.153 17 C -0.095 4.095 18 C 0.159 3.841 19 H 0.087 0.913 20 C -0.056 4.056 21 C -0.094 4.094 22 C -0.168 4.168 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.155 4.155 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.604 -10.181 5.655 11.934 hybrid contribution 0.455 1.575 -0.382 1.683 sum -2.149 -8.606 5.273 10.319 Atomic orbital electron populations 1.70348 1.05423 1.25045 1.54067 1.25399 0.96081 1.00247 1.02027 0.85576 0.77888 0.80683 0.77688 1.20806 1.22089 1.21508 1.19372 0.96301 0.87097 1.36668 0.91259 1.44304 1.30669 1.01531 1.55115 1.21299 0.97152 0.86382 0.95105 1.20878 0.96403 1.01341 0.94195 1.19748 0.96148 0.95472 0.97064 1.21439 1.00136 0.99439 0.93513 1.21322 0.94993 0.98973 0.99264 1.21273 0.99570 0.95826 0.97849 1.21162 0.98916 1.00428 0.94765 1.20354 0.95557 0.97077 0.96467 1.17938 0.84173 0.95707 0.86323 0.91342 1.20348 0.94721 0.92814 0.97718 1.21177 0.92475 0.98182 0.97612 1.21331 0.98373 0.97226 0.99862 1.21221 0.99649 0.93599 1.01142 1.21234 0.94337 1.00243 1.00263 1.21266 0.98098 0.96397 0.99761 0.94263 0.94252 0.92253 0.88747 0.91589 0.84045 0.83222 0.84042 0.87528 0.87167 0.85714 0.84343 0.84748 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.09 7.78 21.65 0.17 -49.92 16 2 C -0.04 -2.25 4.83 84.86 0.41 -1.84 16 3 Si 0.95 44.83 29.62 68.60 2.03 46.86 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.27 -14.43 9.70 84.03 0.82 -13.61 16 8 H 0.07 3.71 7.93 -2.91 -0.02 3.69 16 9 N -0.60 -29.47 2.62 -685.03 -1.80 -31.27 16 10 C 0.13 5.14 6.11 86.17 0.53 5.66 16 11 C -0.09 -3.05 5.87 29.75 0.17 -2.88 16 12 C -0.08 -3.02 5.76 -19.85 -0.11 -3.14 16 13 C -0.13 -3.66 9.59 22.37 0.21 -3.44 16 14 C -0.13 -3.33 10.04 22.20 0.22 -3.11 16 15 C -0.13 -3.70 10.05 22.21 0.22 -3.48 16 16 C -0.13 -4.92 9.40 22.35 0.21 -4.71 16 17 C -0.09 -3.82 4.67 -19.95 -0.09 -3.91 16 18 C 0.27 12.64 1.83 43.37 0.08 12.72 16 19 H 0.07 3.77 5.83 -2.39 -0.01 3.76 16 20 C -0.05 -2.45 4.46 -19.87 -0.09 -2.53 16 21 C -0.08 -3.40 8.16 22.27 0.18 -3.22 16 22 C -0.15 -5.74 10.05 22.27 0.22 -5.52 16 23 C -0.14 -4.72 10.05 22.27 0.22 -4.50 16 24 C -0.14 -5.07 10.05 22.27 0.22 -4.84 16 25 C -0.14 -5.62 8.28 22.27 0.18 -5.43 16 26 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 27 H 0.04 1.60 4.84 -2.39 -0.01 1.59 16 28 H 0.06 2.36 7.96 -2.39 -0.02 2.34 16 29 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.14 3.16 8.05 -2.91 -0.02 3.14 16 32 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.11 3.95 8.05 -2.91 -0.02 3.93 16 35 H 0.11 5.33 6.51 -2.92 -0.02 5.31 16 36 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 37 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.11 4.51 5.49 -2.91 -0.02 4.50 16 Total: -1.00 -62.20 309.73 5.06 -57.13 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 1.05 Total: 24.97 kcal Atomic # 6 Polarization: -51.38 SS G_CDS: 3.62 Total: -47.76 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -1.63 Total: -81.20 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.20 5.06 -57.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339606849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.641 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds