Wall clock time and date at job start Wed Apr 15 2020 11:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00096 * 2 1 4 4 H 1.48497 * 109.47556 * 270.00216 * 3 2 1 5 5 H 1.48495 * 109.47339 * 149.99413 * 3 2 1 6 6 H 1.48508 * 109.47003 * 30.00080 * 3 2 1 7 7 C 1.38656 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00264 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99924 * 174.92396 * 9 7 2 11 11 C 1.38879 * 120.07195 * 185.38677 * 10 9 7 12 12 C 1.38098 * 119.92858 * 179.72219 * 11 10 9 13 13 C 1.38297 * 120.06933 * 0.55923 * 12 11 10 14 14 C 1.50707 * 119.93024 * 179.74171 * 13 12 11 15 15 N 1.46903 * 109.47098 * 269.98015 * 14 13 12 16 16 C 1.47836 * 110.99623 * 295.31163 * 15 14 13 17 17 C 1.54914 * 104.79741 * 213.63612 * 16 15 14 18 18 C 1.55145 * 101.64893 * 37.07164 * 17 16 15 19 19 C 1.47443 * 110.99871 * 174.47117 * 15 14 13 20 20 H 1.09002 * 109.88214 * 242.66193 * 19 15 14 21 21 C 1.53001 * 109.88883 * 3.68478 * 19 15 14 22 22 F 1.39903 * 109.46778 * 178.12525 * 21 19 15 23 23 C 1.38301 * 120.13992 * 359.72105 * 13 12 11 24 24 C 1.38094 * 120.06806 * 359.97438 * 23 13 12 25 25 H 0.97005 * 120.00093 * 179.97438 * 1 2 3 26 26 H 1.07994 * 120.02857 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.95881 * 180.25558 * 12 11 10 28 28 H 1.09006 * 109.46604 * 29.97786 * 14 13 12 29 29 H 1.08996 * 109.47340 * 149.97569 * 14 13 12 30 30 H 1.08992 * 110.37901 * 332.46630 * 16 15 14 31 31 H 1.09004 * 110.37860 * 94.81093 * 16 15 14 32 32 H 1.09001 * 110.98846 * 278.98073 * 17 16 15 33 33 H 1.08994 * 111.02214 * 155.17774 * 17 16 15 34 34 H 1.09001 * 110.70392 * 205.96572 * 18 17 16 35 35 H 1.09000 * 110.70534 * 82.72995 * 18 17 16 36 36 H 1.08998 * 109.47552 * 298.12328 * 21 19 15 37 37 H 1.09007 * 109.46988 * 58.12928 * 21 19 15 38 38 H 1.08004 * 119.95891 * 180.02562 * 23 13 12 39 39 H 1.07999 * 120.03486 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 3.5470 1.4402 0.7001 6 1 1.4470 2.6527 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 -0.1059 11 6 1.4366 -4.7348 -0.2251 12 6 2.1875 -5.8882 -0.3390 13 6 3.5687 -5.8202 -0.3229 14 6 4.3851 -7.0815 -0.4416 15 7 4.6413 -7.6268 0.8982 16 6 5.4798 -6.7051 1.6938 17 6 6.3486 -7.6289 2.5836 18 6 6.6359 -8.8112 1.6210 19 6 5.3247 -8.9307 0.8161 20 1 4.6939 -9.7077 1.2480 21 6 5.6350 -9.2647 -0.6444 22 9 6.3208 -10.4824 -0.7087 23 6 4.2024 -4.5973 -0.1985 24 6 3.4572 -3.4397 -0.0905 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3580 -4.7889 -0.2328 27 1 1.6955 -6.8447 -0.4359 28 1 3.8370 -7.8146 -1.0336 29 1 5.3332 -6.8560 -0.9296 30 1 6.1118 -6.1057 1.0386 31 1 4.8545 -6.0613 2.3123 32 1 5.7919 -7.9643 3.4587 33 1 7.2727 -7.1318 2.8782 34 1 6.8290 -9.7261 2.1812 35 1 7.4724 -8.5775 0.9624 36 1 4.7036 -9.3422 -1.2053 37 1 6.2533 -8.4764 -1.0739 38 1 5.2812 -4.5475 -0.1867 39 1 3.9526 -2.4849 0.0061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293130040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:45:57 Heat of formation + Delta-G solvation = -52.934602 kcal Electronic energy + Delta-G solvation = -21405.074167 eV Core-core repulsion = 18034.388626 eV Total energy + Delta-G solvation = -3370.685542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.83707 -39.81610 -38.83664 -36.64065 -32.93614 -32.10786 -30.95181 -30.21188 -28.90201 -25.47679 -25.32541 -24.50312 -22.09142 -21.33751 -20.87538 -19.67912 -18.39429 -17.09833 -16.80517 -16.32372 -16.06729 -15.26927 -15.13992 -14.55613 -14.41752 -14.01457 -13.91779 -13.68859 -13.55137 -13.16524 -13.02074 -12.74657 -12.42700 -12.36519 -11.55815 -11.49224 -11.25240 -11.20678 -11.04191 -10.85870 -10.83699 -10.73356 -10.54890 -10.33716 -10.28669 -9.43075 -8.79560 -8.37668 -8.25836 -7.27850 -6.79627 -4.08908 2.13174 2.18273 3.21765 3.27359 3.41293 3.82033 4.09242 4.17805 4.32085 4.50087 4.62094 4.69685 4.83233 4.96405 5.05173 5.08704 5.17176 5.19828 5.28764 5.32857 5.44190 5.58228 5.62401 5.66117 5.73294 5.77913 5.85930 6.03471 6.06628 6.12196 6.32687 6.59666 6.79124 6.83391 6.95389 7.07751 7.22091 7.29889 7.53891 7.70000 8.37622 8.89409 9.58386 10.64476 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033634 B = 0.003431 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.298955 B = 8160.087246 C = 8538.640692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.010 3.990 3 Si 1.099 2.901 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.472 4.472 8 H 0.084 0.916 9 O -0.202 6.202 10 C 0.159 3.841 11 C -0.197 4.197 12 C -0.052 4.052 13 C -0.179 4.179 14 C 0.097 3.903 15 N -0.512 5.512 16 C 0.045 3.955 17 C -0.130 4.130 18 C -0.135 4.135 19 C 0.041 3.959 20 H 0.095 0.905 21 C 0.042 3.958 22 F -0.217 7.217 23 C -0.064 4.064 24 C -0.230 4.230 25 H 0.283 0.717 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.250 -15.044 1.015 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.196 4.196 3 Si 0.923 3.077 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.101 0.899 9 O -0.107 6.107 10 C 0.106 3.894 11 C -0.216 4.216 12 C -0.071 4.071 13 C -0.181 4.181 14 C -0.029 4.029 15 N -0.236 5.236 16 C -0.082 4.082 17 C -0.169 4.169 18 C -0.174 4.174 19 C -0.068 4.068 20 H 0.113 0.887 21 C -0.013 4.013 22 F -0.198 7.198 23 C -0.082 4.082 24 C -0.249 4.249 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.302 -13.390 1.272 17.568 hybrid contribution 1.113 -1.608 -0.436 2.004 sum 12.415 -14.998 0.836 19.488 Atomic orbital electron populations 1.70542 1.06574 1.31702 1.42476 1.26540 0.96844 1.01141 0.95027 0.83053 0.74174 0.73094 0.77400 1.20701 1.20829 1.20019 1.22238 0.93090 0.82201 1.57302 0.89864 1.83668 1.35588 1.12273 1.79121 1.19253 0.90284 0.87411 0.92481 1.20198 0.99465 0.90415 1.11523 1.20437 0.92792 0.96551 0.97294 1.19028 0.93579 0.93002 1.12443 1.21124 0.97634 0.94890 0.89289 1.63895 1.43540 1.01477 1.14721 1.23083 0.94380 0.94963 0.95777 1.22730 0.99842 0.95951 0.98327 1.22817 0.96717 0.99546 0.98306 1.23086 0.95330 0.94380 0.93988 0.88715 1.22788 0.97092 0.82665 0.98795 1.92755 1.82086 1.47462 1.97541 1.20597 0.97990 0.91901 0.97756 1.21125 0.93745 0.98877 1.11194 0.90739 0.86706 0.86988 0.90355 0.94479 0.93394 0.89629 0.90564 0.90777 0.90530 0.91354 0.89878 0.90645 0.87921 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.26 13.70 55.48 0.76 -25.50 16 2 C 0.01 0.28 5.49 -17.52 -0.10 0.18 16 3 Si 1.10 23.60 29.92 -169.99 -5.09 18.51 16 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.47 -13.24 9.49 30.89 0.29 -12.95 16 8 H 0.08 2.19 5.20 -52.49 -0.27 1.92 16 9 O -0.20 -5.69 9.16 0.03 0.00 -5.69 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.20 -4.09 9.99 -39.40 -0.39 -4.48 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.18 -2.93 5.01 -104.57 -0.52 -3.45 16 14 C 0.10 1.23 3.84 -4.97 -0.02 1.21 16 15 N -0.51 -6.28 5.19 -224.78 -1.17 -7.44 16 16 C 0.05 0.54 5.49 -2.30 -0.01 0.53 16 17 C -0.13 -1.24 7.08 -24.59 -0.17 -1.42 16 18 C -0.14 -1.24 6.25 -24.91 -0.16 -1.39 16 19 C 0.04 0.42 3.80 -66.72 -0.25 0.16 16 20 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 21 C 0.04 0.40 5.60 37.16 0.21 0.61 16 22 F -0.22 -2.41 17.11 2.25 0.04 -2.37 16 23 C -0.06 -1.13 8.75 -39.61 -0.35 -1.47 16 24 C -0.23 -4.95 9.17 -39.40 -0.36 -5.32 16 25 H 0.28 8.61 7.97 -40.82 -0.33 8.29 16 26 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 27 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.08 0.89 6.33 -51.93 -0.33 0.56 16 29 H 0.04 0.44 6.59 -51.93 -0.34 0.09 16 30 H 0.05 0.57 6.70 -51.93 -0.35 0.22 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 36 H 0.08 0.72 6.55 -51.93 -0.34 0.38 16 37 H 0.08 0.68 6.76 -51.93 -0.35 0.33 16 38 H 0.10 1.56 7.27 -52.48 -0.38 1.18 16 39 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -30.19 316.38 -8.31 -38.51 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.15 Total: 4.74 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -2.48 Total: -25.54 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: -0.41 Total: -32.94 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: 0.00 Total: -5.69 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.09 Total: 18.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.19 -8.31 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293130040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.427 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds